BAC Information

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BAC

Clone NameMSMg01-543F12
Chromosome7 (Build37)
Map Location 17,543,903 - 17,544,390
singlet/doubletsinglet
Overlap genenone
Upstream geneEhd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128
Downstream gene0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543F12.T7 (MSMg01no543_f12.b1)MSMg01-543F12.TJ (MSMg01no543_f12.g1)
ACCAG608901AG608902
length770759
length of high quality
(start - end)
542 (69 - 610)485 (95 - 579)
definitionCHROMAT_FILE: MSMg01no543_f12.b1 PHD_FILE: MSMg01no543_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:41 2005CHROMAT_FILE: MSMg01no543_f12.g1 PHD_FILE: MSMg01no543_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCTTTTTTTTGCGGCCGCTATTAGACTCACTTTTTCGGAGAGATCCGCG
GAATTCACTGGCTTTCTAATTGCTAATTCCTAGAAGCAGAGAGAGACCCT
GTGGTGGTTTGAATGTGCTTGAAGCTATTAGGAGGTTGGCCTTGTTGGAG
TAGGTGTGGCTTTGGGGGAGGAAGAGTGTCCTGTGGGGATGAGCAATGAG
ACCTTCCTCTGAACCACTTAGGAGCCAGTCTTCTCCTGTTTGCCTTTGGA
GCTCCTCCAGCACCTTGCCTTTGACCAGAAGCACTGTGAGAAGGAAGGAT
TTATTTTTATAGCTTACAATCCACCATCAAGGGAGGGCAAGGCAGGAGCC
CTGTTGCAAACAGAGACTGTGGAGGAGTATAGCTTACTGGGGTGTTCCTC
ACTACTTTCTCTTGCTGCTTGCTTGCTTTCTTTTGGTTTTCCAAGACAGA
GTTTCTTTGTGTAGCCCTGACCATCCTAGAACTCACTCTGTAGACCAGAA
AGGTCTTAAACTCAGAGATCTGCCTGCCTCTGTCTCCTGAGTGGTGGGAC
TAAAGGCATGTGCGACCTCTGTCTGGCTTTAGCTTACTTTTTTTCCTTTT
TTTTTTTTCTTCTTTCTGGGTTTTTTCCGAGAACGGGGTTTCTCTGGTAA
TTTCCTGGGTGGTCCCGGGACTTTACTGTTTTATTTTTCCGGGCTTCTAC
CTCCCTATTTTTTGTCTGCCCCTTTGTTTCTCTGATGGGGTGGTGATTTT
ATTCCTATTTTTCCCACTGN
NCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATACAAAGCANATGTGTAT
CGTCTGTACAGCTAGAGTTCCATGGTCCTCACATCCCTTTGTCTGTATTC
TCTAACATGGAAAAGGTGGATTGGGAGTGATGGGGAGGAGAGATGCCTCA
CAGGGACCCCGTGGCTTGGAGGATGTATCTATGGGCAAGGTCAAGTGCAG
CCAGGAGGAAGGGCAGTGCAGGGAGTCATCTCCCTAGATAAGTGGGATCT
TGCAGTTCTGTGTGCTCTTCAAGGCCATCTGCTGCAGGATGGATGTGGCT
AAACCATGGGGACCTCTGGGAGCCCTGAACCTCCTTCTTGACTTCACAAC
TCCTGGGAGGGTGTGTGGTCACTCCATGGTATGTGAGGTAGTAGCAGGGT
GGCATTATTCAAATCATCTTTCACCTTCAGATTCATTCTCCTATCAACAA
CAATCTCAAAAAAAAAAAAAAAAGATGGAAACAAATCCTTAGGGGTTTGT
TTGTTTGTTTTAATGAATGGCAGCTCTTTTCCTGCGTGACTTATTAAAAT
AGATGACCCTTTCTATAATAACAAAGCCACTAGCCTTGGGAGAAGAGTAA
GTTGGGTCATGTTGCCTGGGTGACTTGCCCCGGATACAGGTCTCGTGAAC
ACAGCTCTTGTGAATAAAGGAAGCTTTGCCAGGGGACTTTTTGTGGTGTG
GAATAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_f12.g1 MSMg01no543_f12.g1 CHROMAT_FILE:
MSMg01no543_f12.g1 PHD_FILE: MSMg01no543_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:41 2005
         (485 letters)



>mm_chr7_17543703_17544590
          Length = 888

 Score =  888 bits (459), Expect = 0.0
 Identities = 480/489 (98%), Gaps = 5/489 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtatcgtctgtacagctagagttccatggtcctcacatccctttgtctgtattctcta 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 688 gtgtatcgtctgtacagctagagttccatggtcctcacgtccctttgtctgtattctcta 629

                                                                       
Query: 61  acatggaaaaggtggattgggagtgatggggaggagagatgcctcacagggaccccgtgg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 628 acatggaaaaggtggattgggagcgatggggaggagagatgcctcacagggaccccgtgg 569

                                                                       
Query: 121 cttggaggatgtatctatgggcaaggtcaagtgcagccaggaggaagggcagtgcaggga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 568 cttggaggatgtatctatgggcaaggtcaagtgcagccaggaggaagggcagtgcaggaa 509

                                                                       
Query: 181 gtcatctccctagataagtgggatcttgcagttctgtgtgctcttcaaggccatctgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtcatctccctagataagtgggatcttgcagttctgtgtgctcttcaaggccatctgctg 449

                                                                       
Query: 241 caggatggatgtggctaaaccatggggacctctgggagccctgaacctccttcttgactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 caggatggatgtggctaaaccatggggacctctgggagccctgaacctccttcttgactt 389

                                                                       
Query: 301 cacaactcctgggagggtgtgtggtcactccatggtatgtgaggtagtagcagggtggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cacaactcctgggagggtgtgtggtcactccatggtatgtgaggtagtagcagggtggca 329

                                                                       
Query: 361 ttattcaaatcatctttcaccttcagattcattctcctatcaacaacaatctcaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 ttattcaaatcatctttcaccttcagattcattctcctatcaacaacaatctc-aaaaaa 270

                                                                       
Query: 421 aaaaaaaaagatggaaacaaatccttaggg----gtttgtttgtttgttttaatgaatgg 476
           ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 269 aaaaaaaaagatggaaacaaatccttaggggtttgtttgtttgtttgttttaatgaatgg 210

                    
Query: 477 cagctcttt 485
           | |||||||
Sbjct: 209 cggctcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 888
Length adjustment: 10
Effective length of query: 475
Effective length of database: 878
Effective search space:   417050
Effective search space used:   417050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)