Query= MSMg01no544_d12.b1 MSMg01no544_d12.b1 CHROMAT_FILE:
MSMg01no544_d12.b1 PHD_FILE: MSMg01no544_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:48 2005
(436 letters)
>mm_chr7_148935487_148936324
Length = 838
Score = 739 bits (382), Expect = 0.0
Identities = 415/426 (97%), Gaps = 2/426 (0%)
Strand = Plus / Plus
Query: 6 gaattctccctaat-tcctgagctttggggaatgagtggggcagagtga-tatgacagcc 63
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 206 gaattctccctaaaatcctgagctttggggaatgagtggggcagagtgaatatgacagcc 265
Query: 64 tgggaggctcaaggactgagtcatgagccatgtaagtcctagtaggtgagattcctccac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgggaggctcaaggactgagtcatgagccatgtaagtcctagtaggtgagattcctccac 325
Query: 124 tcatcctcctgctcattggtgcatctctccatcaattcattgtccagtcatctatcaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcatcctcctgctcattggtgcatctctccatcaattcattgtccagtcatctatcaata 385
Query: 184 caattaacaatgtattatcatctatttatccatccacccatccatccacttgcctatcca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caattaacaatgtattatcatctatttatccatccacccatccatccacttgcctatcca 445
Query: 244 ttttcaatctgaccacccatcaatctacccaatactcatccatccacccatccatccatc 303
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct: 446 ttttcaatctgaccacccatcaatctacccaatacccatccatccatccatccatccacc 505
Query: 304 catccatccatccatccatccatccatccatccatccatccacccacccatccatccacc 363
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 506 cacccatccatccatccatccatccatccatccatccatccacccacccatccatccatc 565
Query: 364 catccacccacccatccatccatccatccatccatccatccatccatccatccatccatc 423
|||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 566 catccatccatccatccatccatccatccatccacccatccatccatccatccatccatc 625
Query: 424 catcca 429
||||||
Sbjct: 626 catcca 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 275
Number of extensions: 76
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 838
Length adjustment: 9
Effective length of query: 427
Effective length of database: 829
Effective search space: 353983
Effective search space used: 353983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_d12.g1 MSMg01no544_d12.g1 CHROMAT_FILE:
MSMg01no544_d12.g1 PHD_FILE: MSMg01no544_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:48 2005
(611 letters)
>mm_chr7_149095832_149096843
Length = 1012
Score = 1116 bits (577), Expect = 0.0
Identities = 602/611 (98%), Gaps = 3/611 (0%)
Strand = Plus / Minus
Query: 1 tagtagttattggaccaaccgtattaggaattgctgatctgttttttaattaaaacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tagtagttattggaccaaccgtattaggaattgctgatctgttttttaattaaaacattt 916
Query: 61 cttgtatctatatatacaagttatatataaccctttgttatataaaatataaccttttaa 120
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 915 cttgtatctatatgtacaagttatatataaccctttgttatatacaatataaccttttaa 856
Query: 121 ggtgttatatacatacacatacacacacacaaatacatacatatatgctctatttccaat 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ggtgttatatacatacac--acacacacacaaatacatacatatatgctctatttccaat 798
Query: 181 aaatataagctatttgagaaattgaattttagagagcagtttgtggagaattgttcaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaatataagctatttgagaaattgaattttagagagcagtttgtggagaattgttcaatt 738
Query: 241 tcaaatactagccttccacaatgccttcctcaacttaaactttaacccaaaagtttcttt 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcaaatacgagccttccacaatgccttcctcaacttaaactttaacccaaaagtttcttt 678
Query: 301 tttccactaaattgtttttgttatgtatttgtcacaacgatgagaaaaaataaaatgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 677 tttccactaaattgtttttgttatgtatttgtcacaacgatgagaaaaaataaaatgcat 618
Query: 361 attaactattctttaaaaacctcttagtggttggcctgtttgatgttagataaatgtttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attaactattctttaaaaacctcttagtggttggcctgtttgatgttagataaatgtttc 558
Query: 421 catctaacagaacacagctccacaggtggtatgaacgcagtaagagaaataactctaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catctaacagaacacagctccacaggtggtatgaacgcagtaagagaaataactctaatg 498
Query: 481 ctt-cccctgaccctgtacagattcatcctgcacattctgccatttaccaaaagcacaaa 539
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 497 cttccccctgaccctgtacagattcattctgcacattctgccatttaccaaaagcacaaa 438
Query: 540 tgggctgaaatcctcaaagatgtcgtcatgagtgtatttgaataagcttacctgtcatgc 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taggctgaaatcctcaaagatgtcgtcatgagtgtatttgaataagcttacctgtcatgc 378
Query: 600 tttggctttgt 610
|||||||||||
Sbjct: 377 tttggctttgt 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
