BAC Information

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BAC

Clone NameMSMg01-545I19
Chromosome7 (Build37)
Map Location 64,962,798 - 64,963,429
singlet/doubletsinglet
Overlap geneGabrb3
Upstream geneLOC100040839, Gabrg3, Gabra5
Downstream geneEG668807, LOC434189, Atp10a
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545I19.T7 (MSMg01no545_i19.b1)MSMg01-545I19.TJ (MSMg01no545_i19.g1)
ACCAG610585AG610586
length707710
length of high quality
(start - end)
639 (40 - 678)559 (69 - 627)
definitionCHROMAT_FILE: MSMg01no545_i19.b1 PHD_FILE: MSMg01no545_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:33 2005CHROMAT_FILE: MSMg01no545_i19.g1 PHD_FILE: MSMg01no545_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGATCCGCGGAAT
TCCATGTTGAAATTTATGTAGACTTTGCCATATCCCCATATAGACCCTGT
GCCTCTATTTTCATGAGAGCCACAGGCACAGGGTCACACACAACAGACAC
ACAGAAACGCCTAAGTGGACAGACAGATAGACAGACTCGAGTGCGGCCAG
AAAAAGTGAGGAGCACACAATATAGACTTCACGTTGTCCATTGTTCTCCA
TTTTGTGACTCACTTTGGGATGGAAAACAAAGATAATACCTGGTTTTAAA
ACAAGGGAAGCAAGATAACAGCAAAGTAAAAAAGCAGTTACACAGTGTTT
TCAGCAAAGAGGATTCAAGAATCACATCTTCAAACCATCAGTCTTTAGTT
TAAATATAGAACATGGAAAGAGTGGAAAAATGAAGCATTAAGTTGGTTAA
GAAGAGCCCATCGCTGTAACCAAATGCTTCCCAAAGGAAGGCAGCATCTA
CAGTGGGTACCAGCTTACACTGAAGCAGTCCAGAAGTCTGAAGCACGCAG
CAATCCCTGAAAGCACACTGTAATTTATGTCCCTTGCTACCCTCTGTGAC
AGAAAAGGTGGAAGAGCCTTTTTAAAAGTGCACTCCAGGGTGCTTGGGCC
TCTGAGGGGAAAGTGTGCATTGAATAAGCAAGTGGCATTAAGACCCTCCA
AATATGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGTTGAAATGGTCTACTATACATGCTGACAG
GTCGACTGCTATTGCCAGTATGAGTGTCTTGTTTAGGTAGCCATATTGTT
GAGTGTCATGGGTGTAGCATACTTGTTTTGCAGCAGGAACCGTGGACCTT
TGGCTCTTCAATCTTTCTATCTGCTGTGGTATGAATAGGTATATACCCTA
TAGACTCATGTGTTTGAATTCTTGGCCCACAGAGAATAGCCCATAGGGAG
GTAGAGCCTTGGAGTTGGTGTGGTCTTGTTGAAGGAGATGTGTCACTGTA
TGGAGTGACCTTTGAAGTCTTCTGTGCTCAAGTTATGCAGAGTGTGAAAC
ACGATCCCTTTTTGCTTCCTGTGGATCAAGATGTAGAACATTCAGTTCCT
CCAGTACTATGTCTGCTTGCGTGCTTCTTGTGGTGATAATAATGAACTAA
GCCTCTGAAACTATAAACAAAATCCCATTAAATGGTTTTTAAGTAAGAAT
TGCTGTGATCATGGAGTCTCTTCACAGCAATAGAAATCCTAACACTTCAC
CTGATCTTCTGCCATTTTCCCTTATCCTTAAATAAAGAAGTTGTAATGGT
AAATGTACTAGTTTATGCTGAGCATCCCACAGTCACTTATTTTCTGCATT
TTGGCTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_i19.b1 MSMg01no545_i19.b1 CHROMAT_FILE:
MSMg01no545_i19.b1 PHD_FILE: MSMg01no545_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:33 2005
         (639 letters)



>mm_chr7_64962591_64963629
          Length = 1039

 Score = 1116 bits (577), Expect = 0.0
 Identities = 619/633 (97%), Gaps = 2/633 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattc-catgttgaaatttatgtagactttgccatatccccatatagaccctgtgcctc 66
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 839 gaattcacatgttgaaatttatgtagactttgccatatgcccatatagaccctgttcctc 780

                                                                       
Query: 67  tattttcatgagagccacaggcacagggtcacacacaacagacacacagaaacgcctaag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tattttcatgagagccacaggcacagggtcacacacaacagacacacagaaacgcctaag 720

                                                                       
Query: 127 tggacagacagatagacagactcgagtgcggccagaaaaagtgaggagcacacaatatag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tggacagacagatagacagactcgagtgcggccagaaaaagtgaggagcacacaatatag 660

                                                                       
Query: 187 acttcacgttgtccattgttctccattttgtgactcactttgggatggaaaacaaagata 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 acttcacgttgtccattgttctccattttgtgactcactttgggatggaaaacaaagata 600

                                                                       
Query: 247 atacctggttttaaaacaagggaagcaagataacagcaaagtaaaaaagcagttacacag 306
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 599 atacctggttttaaaacaagggaagcaagataacagcaaagtaaaaaagcagttacacgg 540

                                                                       
Query: 307 tgttttcagcaaagaggattcaagaatcacatcttcaaaccatcagtctttagtttaaat 366
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgttttcagcaaagagaattcaagaatcacatcttcaaaccatcagtctttagtttaaat 480

                                                                       
Query: 367 atagaacatggaaagagtggaaaaatgaagcattaagttggttaagaagagcccatcgct 426
           |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| |
Sbjct: 479 atagaacatggaaagagtgg-aaaatgaagcattacgttgattaagaagagcccatcgat 421

                                                                       
Query: 427 gtaaccaaatgcttcccaaaggaaggcagcatctacagtgggtaccagcttacactgaag 486
           |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtaaccaactgtttcccgaaggaaggcagcatctacagtgggtaccagcttacactgaag 361

                                                                       
Query: 487 cagtccagaagtctgaagcacgcagcaatccctgaaagcacactgtaatttatgtccctt 546
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 360 cagtccagaagtctgaagcacacagcagtccctgaaagcacactgtaatttatgtccctt 301

                                                                       
Query: 547 gctaccctctgtgacagaaaaggtggaagagcctttttaaaagtgcactccagggtgctt 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gctaccctctgtgacagaaaaggtggaagagcctttttaaaagtgcactccagggtgctt 241

                                            
Query: 607 gggcctctgaggggaaagtgtgcattgaataag 639
           |||||||||||||||||||||||||||||||||
Sbjct: 240 gggcctctgaggggaaagtgtgcattgaataag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)