BAC Information

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BAC

Clone NameMSMg01-545O19
Chromosome7 (Build37)
Map Location 51,655,769 - 51,656,402
singlet/doubletsinglet
Overlap genenone
Upstream geneSiglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3
Downstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545O19.T7 (MSMg01no545_o19.b1)MSMg01-545O19.TJ (MSMg01no545_o19.g1)
ACCAG610870AG610871
length749750
length of high quality
(start - end)		634 (58 - 691)599 (63 - 661)
definitionCHROMAT_FILE: MSMg01no545_o19.b1 PHD_FILE: MSMg01no545_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:02 2005CHROMAT_FILE: MSMg01no545_o19.g1 PHD_FILE: MSMg01no545_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAAC
TTCTCCAACTGCCCAAACCTAGCTGAACTTAACCCCGGGTTGCAAAGCAT
TCTGGGAAAGTGACCTCTTGTAATTTGGGTTCTCCTCCATGAGGGGTTTT
TCAGCAGCAAGGAGGCATAAGAAGGGGGAAGAATGAGGAGAAGGGAGCAT
GGGAGAGGACGTTAGCAGAAGTCACCCAGGACCTGCTAAAACTGACCTGA
GAGAAGACAGTTTCTGAGAGAATGAAGTGAGCCCATGCCTCCTCAGGTTC
CCTCCTACTTCATGGATTCTGCTTCAGCATTGGATGGCCACCTTGTCAAT
CACTTGACGAGTCTGATAAGCGTGCTATAGGACCCTCCTCATCTCCCCTC
ACCATTGGTTCAGACACTCTGGGGGACCTCCATCTCCCTTTTCTCCCTAT
GGCAAATGCATCTCAAATTTATAATGCTTTAGTCAGGAACACAGGGGCCT
TCGATGGATGGTCCTTTGAGAAGTGCACAGCAGAGGTGAGGGGTGGGCCT
CCAGATGTCTGACACATTTCACCACTACTGGCTCCTCAGAACACATTCAC
AGCTCCTCATAGATAGCATTTCCCCAAAGTCTTCTACTGTGCAAAATAGA
AACCCACAAAGCTGCTACTCTTTTGGTTTGATGGATAGGACTGAGCACAC
AGGCAATTGTCTTTCAGGATCTGAAGTCAGAAGTCAAGATGTATTCGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGAGAGTACCAGTGAGTA
CAGCTTTACGAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAATTCAAGAC
AGTCTATCAGAAGTAAAGTGGAATATGTTTGGCCTTGAATTTTTTCTGGT
GTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGATTAAGATAG
GGCTGAAAATTCTAGAGGAAATTCAGGACAAGCTATCAGAAGTAAAGTGG
GGAGAGAGAGTAGGAACAAAGAGGAAATATGGTACACAAAATAAGTATAC
AGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGA
ATACCTGGAGAGAGATTAGAAGAAAAAGAGGAAAAAGGGAAAAGAAGAAA
GATCAATTAGCGGAGGTCTCTAGGAAAAGGAGCCTGTGCTCATCGCTGGA
TGGGCTCGGGGAGCCAGCTCTTGGTAGCTCTGAATCAGATGATGAATTCT
CCTCTGAAGAAACAGACTGGGAGGAAGAAGCAGCTCATTATGAGAAAAAA
GGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAAAGC
GGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTCAAG
GTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_o19.b1 MSMg01no545_o19.b1 CHROMAT_FILE:
MSMg01no545_o19.b1 PHD_FILE: MSMg01no545_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:02 2005
         (634 letters)



>mm_chr7_51655569_51656602
          Length = 1034

 Score = 1172 bits (606), Expect = 0.0
 Identities = 627/634 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcccaaacctagctgaacttaaccccgggttgcaaagcattctgggaaagtgacctc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 actgcccaaacctagctgaacttaactccgggttgcaaagcattctgggaaagtgacctc 260

                                                                       
Query: 61  ttgtaatttgggttctcctccatgaggggtttttcagcagcaaggaggcataagaagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaatttgggttctcctccatgaggggtttttcagcagcaaggaggcataagaagggg 320

                                                                       
Query: 121 gaagaatgaggagaagggagcatgggagaggacgttagcagaagtcacccaggacctgct 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gaagaatgaggagaagggagcatgggagaggacgttagcggaagtcacccaggacctgct 380

                                                                       
Query: 181 aaaactgacctgagagaagacagtttctgagagaatgaagtgagcccatgcctcctcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaactgacctgagagaagacagtttctgagagaatgaagtgagcccatgcctcctcagg 440

                                                                       
Query: 241 ttccctcctacttcatggattctgcttcagcattggatggccaccttgtcaatcacttga 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccctcctacttgatggattctgcttcagcattggatggccaccttgtcaatcacttga 500

                                                                       
Query: 301 cgagtctgataagcgtgctataggaccctcctcatctcccctcaccattggttcagacac 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtctgataagcgtgctataggaccctcctcatctcccctcaccattggttcagacac 560

                                                                       
Query: 361 tctgggggacctccatctcccttttctccctatggcaaatgcatctcaaatttataatgc 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgggggacctcgatctcccttttctccctatggcaaatgcatctcaaatttataatgc 620

                                                                       
Query: 421 tttagtcaggaacacaggggccttcgatggatggtcctttgagaagtgcacagcagaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 tttagtcaggaacacaggggccttcgatggatggtcctttgagaagtgcacagcagaggg 680

                                                                       
Query: 481 gaggggtgggcctccagatgtctgacacatttcaccactactggctcctcagaacacatt 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 gaggggtgggcctccagatgtctgacacatctcaccactactggctcctcagaacacatt 740

                                                                       
Query: 541 cacagctcctcatagatagcatttccccaaagtcttctactgtgcaaaatagaaacccac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacagctcctcatagatagcatttccccaaagtcttctactgtgcaaaatagaaacccac 800

                                             
Query: 601 aaagctgctactcttttggtttgatggataggac 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagctgctactcttttggtttgatggataggac 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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