BAC Information

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BAC

Clone NameMSMg01-546D09
Chromosome7 (Build37)
Map Location 82,418,264 - 82,572,649
singlet/doubletdoublet
Overlap gene1500012K07Rik, LOC100042171
Upstream geneSlco3a1, EG665308, EG665641, 0610006L08Rik, Sv2b
Downstream geneAkap13, Klhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546D09.T7 (MSMg01no546_d09.b1)MSMg01-546D09.TJ (MSMg01no546_d09.g1)
ACCAG611089AG611090
length727730
length of high quality
(start - end)
334 (83 - 416)456 (70 - 525)
definitionCHROMAT_FILE: MSMg01no546_d09.b1 PHD_FILE: MSMg01no546_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:26 2005CHROMAT_FILE: MSMg01no546_d09.g1 PHD_FILE: MSMg01no546_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,418,264 - 82,418,597)(82,572,194 - 82,572,649)
sequence
TTTTGTTGCTGCAATACGACTCACTTTTTTCGAGGATCCGTGTTATTCCT
AACTCTTTATTGCTCATGAGGCACACTTCCAGAGCCACTGACACAGATCA
TTGAGACCAACCTGCAGGTGAAAGCCAGTTCTTTCATGCCCATCAAATTT
CAGAAACAGGAGGAGGAGACAGAATCTTGAAGCCAGATATGCCAAGATCC
CCATTGTCAGAGATCCCATGGGATCTAATTCCCCAAGGCAGTCTTGGTTG
GTGACTGCTGCTGTCCGTTTTCACCTGTGAATTACTTAGCATCTCCCTTC
ATCCTGAAAGTGGCTTTGTTTTCATGCCTCTCTAAACATCCTAATACTCT
CAAATATCTGCTTCATTCTGGCCTGTATGAATCCCTCATCTGTAATGGAA
AGTGATTTCCTTCAGGTTAAAGCCTGCTTTTGTTTTCCTGGGGATCACGG
AGACATGGGGACTCTGCAGGTCACTTCAGCTGGCACAGAATGATGAATCC
CTGCTTCTTGGTCCCCATCTGACCACAGTTTTGCATCCTTGCCACAGTGT
TGAAAGCTGTGTTTGCCCTTTGGAGGCTGCTACATCCACTCCAGTAGTGA
CTCGCATTACAAGTTTGTAAACCCTGGAACAGTCCTGTATCATAGTTTTT
GGGATACTCATCCTCCTGGAACCTTTGTATTTCCCATAGCTAGAATGCCC
CATATTTGTCTCTTGCATATTGTATAG
ACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGGTAAAGGGTGGGGTTGCATCAGGCAGG
TGCTTTCAGTCTCTGGCTTGAGGAGTGTCCGTGCTGGCGTGCTTTGGAGC
AATGGCTATAATTCTAATGACTAGCCCAGTCTGTCTCCCTTCAATTCATT
ACACTGCCCTTTCTCCCCAGGACTCCAGTCCAGTCAGTCAGAGTTTGTGC
AACCAGCTGTACCTCAGCAAGTGCTGGCCTGGAATTAACTTGGCAGGGAG
CGTGTTCTGAGACTTCCATGACTCATGACTTTGGGGCTAACTCAGAGCAC
TGAGCTCCGGCCCTGCCCTCTTTGGCTTTTTCTCGGAGCTGATTCACACT
GGGTTGGGATTTTATTGTCAGCAGTCATAATTGTTTATGTGAGGAACTCG
GATTTTTAAAATGACAGAAGGCCAAGCCTAGTGCTTCTGCTAGATTTGTT
ATTTCATTGTGTGATCTCTCTTGGCTGAATAGAAGGAAGGAAGAGAGAAA
ATAACGAACGAAGGGTATCAAGGAAGTTAGAGAGGACAAAAGATCAACAG
ATATACTTCATTGGCCCAAGTTGAGGCTTATTCTCTTCCACTCTCTTACA
GGTGTTTTAAGTCATGGAAAGGACTGTCTTATATCAAATATAAGTAACAT
GAAGATGCATGAGAAAGAGTGTGGACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_d09.b1 MSMg01no546_d09.b1 CHROMAT_FILE:
MSMg01no546_d09.b1 PHD_FILE: MSMg01no546_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:26 2005
         (334 letters)



>mm_chr7_82418064_82418797
          Length = 734

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccactgacacagatcattgagaccaacctgcaggtgaaagccagttctttcatgccca 60
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agccactgacacagatcattaagaccaacctccaggtgaaagccagttctttcatgccca 260

                                                                       
Query: 61  tcaaatttcagaaacaggaggaggagacagaatcttgaagccagatatgccaagatcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaatttcagaaacaggaggaggagacagaatcttgaagccagatatgccaagatcccc 320

                                                                       
Query: 121 attgtcagagatcccatgggatctaattccccaaggcagtcttggttggtgactgctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtcagagatcccatgggatctaattccccaaggcagtcttggttggtgactgctgct 380

                                                                       
Query: 181 gtccgttttcacctgtgaattacttagcatctcccttcatcctgaaagtggctttgtttt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccgttttcacctgtgaattatttagcatctcccttcatcctgaaagtggctttgtttt 440

                                                                       
Query: 241 catgcctctctaaacatcctaatactctcaaatatctgcttcattctggcctgtatgaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 catgcctctctaaacatcctaatactctcaaatatctgcttcattctggcctgtaggaat 500

                                             
Query: 301 ccctcatctgtaatggaaagtgatttccttcagg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctcatctgtaatggaaagtgatttccttcagg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no546_d09.g1 MSMg01no546_d09.g1 CHROMAT_FILE:
MSMg01no546_d09.g1 PHD_FILE: MSMg01no546_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:26 2005
         (456 letters)



>mm_chr7_82571994_82572849
          Length = 856

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggtaaagggtggggttgcatcaggcaggtgctttcagtctctggcttgaggagtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctaggtaaagggtggggttgcatcaggcaggtgctttcagtctctggcttgaggagtgtc 597

                                                                       
Query: 61  cgtgctggcgtgctttggagcaatggctataattctaatgactagcccagtctgtctccc 120
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgtgctggcatgctttggagcaatggctataattctaatgactagcccagtctgtctccc 537

                                                                       
Query: 121 ttcaattcattacactgccctttctccccaggactccagtccagtcagtcagagtttgtg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 536 ttcaattccttacactgccctttctccccaggactccagtccagtcagtcagagtttgta 477

                                                                       
Query: 181 caaccagctgtacctcagcaagtgctggcctggaattaacttggcagggagcgtgttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caaccagctgtacctcagcaagtgctggcctggaattaacttggcagggagcgtgttctg 417

                                                                       
Query: 241 agacttccatgactcatgactttggggctaactcagagcactgagctccggccctgccct 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 416 agacttccatgactcatgactttggggctaactcagagcactgagccccggccctgccct 357

                                                                       
Query: 301 ctttggctttttctcggagctgattcacactgggttgggattttattgtcagcagtcata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctttggctttttctcggagctgattcacactgggttgggattttattgtcagcagtcata 297

                                                                       
Query: 361 attgtttatgtgaggaactcggatttttaaaatgacagaaggccaagcctagtgcttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attgtttatgtgaggaactcggatttttaaaatgacagaaggccaagcctagtgcttctg 237

                                               
Query: 421 ctagatttgttatttcattgtgtgatctctcttggc 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctagatttgttatttcattgtgtgatctctcttggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)