BAC Information

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BAC

Clone NameMSMg01-546P16
Chromosome7 (Build37)
Map Location 105,723,585 - 105,875,665
singlet/doubletdoublet
Overlap gene2210018M11Rik, LOC100040769, Prkrir
Upstream gene1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik
Downstream geneWnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546P16.T7 (MSMg01no546_p16.b1)MSMg01-546P16.TJ (MSMg01no546_p16.g1)
ACCAG611675AG611676
length746748
length of high quality
(start - end)		605 (35 - 639)609 (64 - 672)
definitionCHROMAT_FILE: MSMg01no546_p16.b1 PHD_FILE: MSMg01no546_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:28 2005CHROMAT_FILE: MSMg01no546_p16.g1 PHD_FILE: MSMg01no546_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,875,062 - 105,875,665)(105,723,585 - 105,724,193)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATATT
TCTGACTCTAAAGCGGCAGATCATTATTCTCTCTAGCCTAAGATACACAT
TCCCCTTTCTTTGATTTAATGTCTTGGACTCGAGCTGCAACTTAAAACCA
GTGCACGTGTGGTAGAAATGCTTTTTAGTTCCCTTGAACACTATTATTCA
ATCAAACATACGTCTCATCGGTTTCTTGGAATCCAGGGTCGGGCCATGAG
CCATGAGGACTGAAGGCACGAATGGAGGGAGATCCAGAGGAAGAACCCAG
TGATCGCTTCCCCTGCTCTAAGCTCTGTTGCTCCTCCATCTTGCTAACGC
TTCTTCCGGCATCCTGACCTGCTTCTGACATCCAAGACTTCCAGGTAATG
TGAACCTCTCACCCTTTCTAATTCCTTCTAGAAGTTTCTGTCAGTGTTTC
AAGTAAGAACTAGTGTGTTATGAGGGCTTGGGCATTTTCTTCATCATAGG
TGAGATGCACACTCCTGCTTTACAGGTAACGTCCAGAGAGGGGCTAAGCA
GTCAGGTTAGCTGCATGCCAAGATGATTCACCCAAGGTTCCAGTTTCTGT
TTTGGCTGAACTCTACATGCTCAACAAAAGCTCATGCATTAAAGGCTTTG
ACTCCAGTAAAATAATACAAAAACTTGACTCCTAGTGGATCAATTCATGA
CTAGATCATAGTTTACCAGGCTACTGGGGATTTGGCAAAAAGTTAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGAGCTAAAGTCAGACTTGGCTGGGGCTTTAATACA
AGCTTTGTCATGAACTAGCTATGTGCTATGGGGACAAGTCACTGCCCTGT
CTGGCCTCAGTACTCCATAGGAAACTAGTGGTGTAACCCTCCTGAGACCA
TGATGACACGCATAGACCTCATAATGGCAATGAACTTAGTACTCCCAAAT
GAAGCCATTAAAACAGTCCATTTAAGCACACGGCCCATGCAACACTCCAA
GAACCCACTCCTCCCACCCACTTCTGCTCTTTGCTTGGTTTGGTTTCTTT
CTCAACCCCCTGGAAAATTCCATCCCCACACTATCCAACCCCCTGTCATT
CTCGCTCCCAGTTGCTCTCTCCCACAGTACTTTATGCTGTGGACAGACTG
CCTTTCCTCTAGCAACAAGGAGAGTGGAGAGAAAGTCGCAGGACAGGGGC
AGACAGCCCTGCATTAACAGTCATGTCTTATCCCAGTTGCCTCTGTTATT
TAAGATTTTAGGTGAACGTGTGCACATGATGCCCAAGGAGGCCAAAAGAG
GCTGTTGAAGAAGTCGGTGGTTGTGAGATGTCCAATGTGGTGCTGGGAGC
TGAACCTGGGCTCTCTGCAAGAGCAGCAAGTGCTCTTAACCACTGAGCCA
TCCCTCCATCCTCCTAAGGGACAGAATTTGACCCAACAAGATTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_p16.b1 MSMg01no546_p16.b1 CHROMAT_FILE:
MSMg01no546_p16.b1 PHD_FILE: MSMg01no546_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:28 2005
         (605 letters)



>mm_chr7_105874858_105875865
          Length = 1008

 Score = 1122 bits (580), Expect = 0.0
 Identities = 597/604 (98%), Gaps = 3/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatatttctgactctaaagcggcagatcattattctctctagcctaagatacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaattccatatttctgactctaaagcggcagatcattattctctctagcctaagatacac 749

                                                                       
Query: 65  attcccctttctttgatttaatgtcttggactcgagctgcaacttaaaaccagtgcacgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 attcccctttctttgatttaatgtcttggactcgagctgcaacttaaaaccagtgcacgt 689

                                                                       
Query: 125 gtggtagaaatgctttttagttcccttgaacactattattcaatcaaacatacgtctcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gtggtagaaatgctttttagttcccttgaacactattattcaatcaaacatacgtctcat 629

                                                                       
Query: 185 cggtttcttggaatccagggtcgggccatgagccatgaggactgaaggcacgaatggagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cggtttcttggaatccagggtcgggccatgagccatgaggactgaaggcacgaatggagg 569

                                                                       
Query: 245 gagatccagaggaagaacccagtgatcgcttcccctgctctaagctctgttgctcctcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gagatccagaggaagaacccagtgatcgcttcccctgctctaagctctgttgctcctcca 509

                                                                       
Query: 305 tcttgctaacgcttcttccggcatcctgacctgcttctgacatccaagacttccaggtaa 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcttgctaacgcttcatccggcatcctgacctgcttctgacatccaagacttccaggtaa 449

                                                                       
Query: 365 tgtgaacctctcaccctttctaattccttctagaagtttctgtcagtgtttcaagtaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgtgaacctctcaccctttctaattccttctagaagtttctgtcagtgtttcaagtaaga 389

                                                                       
Query: 425 actagtgtgttatgagggcttgggcattttct---tcatcataggtgagatgcacactcc 481
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 388 actagtgtgttatgagggcttgggcattttctccttcatcataggtgagatgcacactcc 329

                                                                       
Query: 482 tgctttacaggtaacgtccagagaggggctaagcagtcaggttagctgcatgccaagatg 541
           ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 328 tgctttacaggtaatatccagagaggggctaagcagtcaggttagccgcatgccaagatg 269

                                                                       
Query: 542 attcacccaaggttccagtttctgttttggctgaactctacatgctcaacaaaagctcat 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attcacccaaggttccagtttctgttttggctgaactctacatgctcaacaaaagctcat 209

               
Query: 602 gcat 605
           ||||
Sbjct: 208 gcat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1008
Length adjustment: 10
Effective length of query: 595
Effective length of database: 998
Effective search space:   593810
Effective search space used:   593810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no546_p16.g1 MSMg01no546_p16.g1 CHROMAT_FILE:
MSMg01no546_p16.g1 PHD_FILE: MSMg01no546_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:28 2005
         (609 letters)



>mm_chr7_105723385_105724393
          Length = 1009

 Score = 1162 bits (601), Expect = 0.0
 Identities = 607/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagctaaagtcagacttggctggggctttaatacaagctttgtcatgaactagctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagctaaagtcagacttggctggggctttaatacaagctttgtcatgaactagctatg 260

                                                                       
Query: 61  tgctatggggacaagtcactgccctgtctggcctcagtactccataggaaactagtggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctatggggacaagtcactgccctgtctggcctcagtactccataggaaactagtggtg 320

                                                                       
Query: 121 taaccctcctgagaccatgatgacacgcatagacctcataatggcaatgaacttagtact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaccctcctgagaccatgatgacacgcatagacctcataatggcaatgaacttagtact 380

                                                                       
Query: 181 cccaaatgaagccattaaaacagtccatttaagcacacggcccatgcaacactccaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaaatgaagccattaaaacagtccatttaagcacacggcccatgcaacactccaagaa 440

                                                                       
Query: 241 cccactcctcccacccacttctgctctttgcttggtttggtttctttctcaaccccctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccactcctcccacccacttctgctctttgcttggtttggtttctttctcaaccccctgg 500

                                                                       
Query: 301 aaaattccatccccacactatccaaccccctgtcattctcgctcccagttgctctctccc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aaaattccatccccacactatccaaccccctgtcattctctctcccagttgctctctccc 560

                                                                       
Query: 361 acagtactttatgctgtggacagactgcctttcctctagcaacaaggagagtggagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagtactttatgctgtggacagactgcctttcctctagcaacaaggagagtggagagaa 620

                                                                       
Query: 421 agtcgcaggacaggggcagacagccctgcattaacagtcatgtcttatcccagttgcctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtcgcaggacaggggcagacagccctgcattaacagtcatgtcttatcccagttgcctc 680

                                                                       
Query: 481 tgttatttaagattttaggtgaacgtgtgcacatgatgcccaaggaggccaaaagaggct 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 tgttatttaagattttaggtgaacgtgtgcacatgatgcccaaggaggtcaaaagaggct 740

                                                                       
Query: 541 gttgaagaagtcggtggttgtgagatgtccaatgtggtgctgggagctgaacctgggctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttgaagaagtcggtggttgtgagatgtccaatgtggtgctgggagctgaacctgggctc 800

                    
Query: 601 tctgcaaga 609
           |||||||||
Sbjct: 801 tctgcaaga 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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