BAC Information

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BAC

Clone NameMSMg01-547A13
Chromosome7 (Build37)
Map Location 111,797,436 - 111,798,060
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658
Downstream geneLOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547A13.T7 (MSMg01no547_a13.b1)MSMg01-547A13.TJ (MSMg01no547_a13.g1)
ACCAG611717AG611718
length752754
length of high quality
(start - end)		601 (60 - 660)633 (63 - 695)
definitionCHROMAT_FILE: MSMg01no547_a13.b1 PHD_FILE: MSMg01no547_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:32 2005CHROMAT_FILE: MSMg01no547_a13.g1 PHD_FILE: MSMg01no547_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
CCATTCCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT
CAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTA
TTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGG
AAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATA
TAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGC
TTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTT
TCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACAC
CCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACT
AAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGA
AATTAAGGACGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG
GCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGA
TTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGA
AGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAA
AA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTAAGAGCTATGAGTTGGTTCTACAGTCCTTGGGCAACC
TACCAGGAAGTGCTTCCCTTTCTCAAAAAAAAAAAAAAAAAAAAAAAANA
AACCCTTCTCCCTGCAGTCAAAGCTGGGGCTCTGGGCTGGAGTTGTGTGG
GGAGGGACAGAGGGAGGCTTTTAGCTATTGTATAGTCTTTGCCCAACAGG
CACTCAAACCCTCAATCCATAGGGCCCAAAGTTGAGGCTGCTTGCAGTTG
GATAGTGTCCTTTACTGCGCAGACTCCAAAGCAAAGAAGGAAATCTACCT
GGCCTTGTGACAGAAACTCTGACCAGGTATCCAGAGCAGCCCAGCTAGCT
CCCATTTCCCTCACTCCCCAACAGCATAATAATTACTTCAAAGACAAATG
ATTTCCCGTAGAACTATTGTCAACCAAGTTCATGTAAATTCCATTAATTT
ATTAGAAATTTTGTCAACTCCCATTGGTCTTTGTCACTTGTCATTGCCAA
GGATGGGGAATCAGACGTGCCATGCACTTCTGACAGGAGCTTAGACATAA
ACAGCTCTTTCTGTGTATCTTGTATATAATTTGAGGGGCAGTTTTAATCC
CTTAATTCCTGTGAGATTACATCATTACACCCATAGCACTGTCACAGTGG
TTTGTAGATTGTGATCAAACCTTCCAATTCCAAAGACATGTATGTGATCA
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_a13.g1 MSMg01no547_a13.g1 CHROMAT_FILE:
MSMg01no547_a13.g1 PHD_FILE: MSMg01no547_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:32 2005
         (633 letters)



>mm_chr7_111797228_111798260
          Length = 1033

 Score = 1181 bits (611), Expect = 0.0
 Identities = 624/633 (98%), Gaps = 8/633 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagagctatgagttggttctacagtccttgggcaacctaccaggaagtgcttccctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 taagagctatgagttggttctacagtccttgggcaacctaccaggaagtgcttccctttc 268

                                                                       
Query: 61  tcaaaaaaaaaaaaaaaaaaaaaaaanaaacccttctccctgcagtcaaagctggggctc 120
           |||||||||||||||||||        |||||||||||||||||||||||||||||||||
Sbjct: 269 tcaaaaaaaaaaaaaaaaa--------aaacccttctccctgcagtcaaagctggggctc 320

                                                                       
Query: 121 tgggctggagttgtgtggggagggacagagggaggcttttagctattgtatagtctttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctggagttgtgtggggagggacagagggaggcttttagctattgtatagtctttgc 380

                                                                       
Query: 181 ccaacaggcactcaaaccctcaatccatagggcccaaagttgaggctgcttgcagttgga 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ccaacaggcactcaaaccctcaatccatagggcccagagttgaggctgcttgcagttgga 440

                                                                       
Query: 241 tagtgtcctttactgcgcagactccaaagcaaagaaggaaatctacctggccttgtgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgtcctttactgcgcagactccaaagcaaagaaggaaatctacctggccttgtgaca 500

                                                                       
Query: 301 gaaactctgaccaggtatccagagcagcccagctagctcccatttccctcactccccaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaactctgaccaggtatccagagcagcccagctagctcccatttccctcactccccaac 560

                                                                       
Query: 361 agcataataattacttcaaagacaaatgatttcccgtagaactattgtcaaccaagttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcataataattacttcaaagacaaatgatttcccgtagaactattgtcaaccaagttca 620

                                                                       
Query: 421 tgtaaattccattaatttattagaaattttgtcaactcccattggtctttgtcacttgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtaaattccattaatttattagaaattttgtcaactcccattggtctttgtcacttgtc 680

                                                                       
Query: 481 attgccaaggatggggaatcagacgtgccatgcacttctgacaggagcttagacataaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgccaaggatggggaatcagacgtgccatgcacttctgacaggagcttagacataaac 740

                                                                       
Query: 541 agctctttctgtgtatcttgtatataatttgaggggcagttttaatcccttaattcctgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctctttctgtgtatcttgtatataatttgaggggcagttttaatcccttaattcctgt 800

                                            
Query: 601 gagattacatcattacacccatagcactgtcac 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 gagattacatcattacacccatagcactgtcac 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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