Query= MSMg01no547_a23.b1 MSMg01no547_a23.b1 CHROMAT_FILE:
MSMg01no547_a23.b1 PHD_FILE: MSMg01no547_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:34 2005
(626 letters)
>mm_chr7_75970245_75971270
Length = 1026
Score = 1094 bits (566), Expect = 0.0
Identities = 607/622 (97%), Gaps = 3/622 (0%)
Strand = Plus / Plus
Query: 5 gaattctcacggtcaacccccaaaatgtcagtatctgcctccttagctacagctcagtga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacggtcaacccccaaaatgtcagtatctgcctccttagctacagctcagtga 264
Query: 65 tggggagatgcccagctacaacctacgctgagaaataagtttacctagctgcaatacctc 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggggagatgctcagctacaacctacgctgagaaataagtttacctagctgcaatacctc 324
Query: 125 ctcagcttaaacagtcctgctggggttgtagctcagttgctaagagtgctagccttgcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagcttaaacagtcctgctggggttgtagctcagttgctaagagtgctagccttgcat 384
Query: 185 gct---agtcagtccaggcattggagcccaggattgagcaaacaagctgtggttatgcgt 241
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaggaagtcagtccaggcattggagcccaggattgagcaaacaagctgtggttatgcgt 444
Query: 242 gcccattatcccagtacttaggcagaggatccgaagcctaagtaatcttcagccacatgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcccattatcccagtacttaggcagaggatccgaagcctaagtaatcttcagccacatgg 504
Query: 302 tgagctcagcaccagcctggtgtacacgtgaccctgtctcagaaccaaacacaacattta 361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagctcagcaccagtctggtgtacacgtgaccctgtctcagaaccaaacacaacattta 564
Query: 362 catgcttactgtcatctattatgttttaatgtcttcaagagtgacgcacataggggctgg 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 catgcttactgtcatctattatgttttaatgtcgtcaagagtgacgcacataggggctgg 624
Query: 422 agagctggctcagtggctaagagcgctgactgctcttccaaaggtcccgagttcaaatcc 481
|||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 625 agagctggctcagtggttaagagcgccgactgctcttccataggtcccgagttcaaatcc 684
Query: 482 cagcaaccgcatggtggctcacaaccatctgtaatgaaatctgatgccctcttctggagt 541
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 cagcaaccgcatggtggctcacaatcatctgtaatgaaatctgatgccctcttctggagt 744
Query: 542 gtctgaagacagttacagtgtacttacatataataaataaatacatctttataaaaaaag 601
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 745 gtctgaagacagctacagtgtacttacatataataaataaatacatcttaaaaaaaaaaa 804
Query: 602 agtgacggacgtaaacgttttg 623
||||||||||||||||||||||
Sbjct: 805 agtgacggacgtaaacgttttg 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_a23.g1 MSMg01no547_a23.g1 CHROMAT_FILE:
MSMg01no547_a23.g1 PHD_FILE: MSMg01no547_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:35 2005
(624 letters)
>mm_chr7_76133248_76134271
Length = 1024
Score = 1118 bits (578), Expect = 0.0
Identities = 611/624 (97%), Gaps = 4/624 (0%)
Strand = Plus / Minus
Query: 1 caaattactgggtattcaacaacttgaatatgaaagctatttctgaaagaaagagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 caaattactgggtattcaacaacttgaatatgaaagctatttctgaaagaaagagagaaa 962
Query: 61 tggagtgagacagacagtacataaaactatctttcaattatttttcaaagaagaaaaata 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 961 tggagtgagacagacagtacataaaaatatctttcaattatttttcaaagaagaaaaata 902
Query: 121 tgaaatattatttgttattgttttctaaataatttccccgaaattttaacttttgatttt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 901 tgaaatattatttgttattgttttctgaataatttccccgaaattttaacttttgatttt 842
Query: 181 gaaattaatttcaaaaatttttaaactttattttaaaattatgcaaatttaaaaaaaaaa 240
|||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 841 gaaattcatttcaaaaatttttaaactttattaaaaaattatgcaaatt----aaaaaaa 786
Query: 241 aacacacacacacaccaaaattaaccagactcaaagactgtatagctcaatgaactgcta 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 accacacacacacaccaaaattaaccagactcaaagactgtatagctcaatgaactgcta 726
Query: 301 tagagttatattagccattcaagagagtgagctgtggcatttaccttgaatttgacacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tagagttatattagccattcaagagagtgagctgtggcatttaccttgaatttgacacat 666
Query: 361 tcactatcaaatgtatttttcatatactttcttaccaccaaaagtgaaaactccaggtca 420
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 665 tcactatcaaatgtatttttcatatactttcctaccaccaaaagtgaaaaccccaggtca 606
Query: 421 attagaattagaaaaacaactagatttatttcttctgtgcccagtgtctatcacctgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 attagaattagaaaaacaactagatttatttcttctgtgcccagtgtctatcacctgcat 546
Query: 481 cgtttcattgctggtacactcctgataacatctgagacatgttaatatttgacttgttcc 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtttcattgctggcacactcctgataacatctgagacatgttaatatttgacttgttcc 486
Query: 541 tggcatgagactatggatgtgttgaggatagcatgtgcagattagccacttaagatgcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggcatgagactatggatgtgttgaggatagcatgtgcagattagccacttaagatgcat 426
Query: 601 attcactgataagtgaatattagc 624
||||||||||||||||||||||||
Sbjct: 425 attcactgataagtgaatattagc 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
