BAC Information

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BAC

Clone NameMSMg01-547F02
Chromosome7 (Build37)
Map Location 51,678,307 - 51,678,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3
Downstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547F02.T7 (MSMg01no547_f02.b1)MSMg01-547F02.TJ (MSMg01no547_f02.g1)
ACCAG611935AG611936
length743750
length of high quality
(start - end)		677 (26 - 702)670 (64 - 733)
definitionCHROMAT_FILE: MSMg01no547_f02.b1 PHD_FILE: MSMg01no547_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:55 2005CHROMAT_FILE: MSMg01no547_f02.g1 PHD_FILE: MSMg01no547_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTCCT
CTGAATAAACAGACTGGGAGGAAGAAGCAGCTCATTATGAGAAAAAAGGG
TACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAAAGCGGC
TGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTCAAGGTC
CGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAG
AGACAATGCGCAGAGAGGCAATGCGCAGACTCATTCATTCCCAGAGAGGA
ACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAGCCGAGGGTG
GGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGAACTTGCCGAG
TCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGA
CAGGCTCGCCGGCATGGCACTAACTCCTGCCGACTGGCAAACGGTTGTAA
AAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCTCTTTGG
CATGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTGCTTTGACTCC
AGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGTCAGGGAGCTTATT
CTGCTGATCAGACAAACTACCATTGGGGAGCTTATGCCCAGATTTCTTCC
ACGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCCAGACCTCTTTTTACTTATTTTGAGGTAGGGTCTT
CCTAAGTTGCTCAGGCTGTCCTTCAATTCATTCTGTAAACCAGCCTAGCC
TTGAACTTACAATCTTCCTGTCGGAGCCTCTCAAGCAGCTGGGATCCCTG
TGACCCCAGGCACAGTCTTATTGGACAGACTGGTATGTTGGTTGTCCTCA
AGAACACCCCATCCTCTGGCTCTGCTGGCTGATCCTTCACAGTGTCTAAC
CTTTTCCTGAGTCTGACAAGAAGCGGCTTAAGCATGGGAGGACTTACTTG
GCTCACAGTTTGCAGGTCCATCATGGAAAGGAAGGCATGGAGGTGGCCAC
GTTTCGTGGTTGCGTTTGCAGAGCATGCAGCAGCTTGTTGGCATGGCTGT
AGCTCTTCACATCTTGACAGAACAGGAAGCAGAGAGAACTAGAGGCAGAT
CGTGTTATAACTGTCAAGGCTAAGGCATCCTAGATCTCATGGGGCGAGGC
AAGACAATCAGGAGTCTATGATTATCCTCAATTACCTAGGGAGTCTGAGG
CTAGCCTGGGCTACTTGAGACCCTGCCTCAAAGACAAGCAGAAGATGCTA
ACTGCCCATGATGCAACACTCTTTCCACAAAGACACTGTCATAGTGATGC
CAGCCATAATGATGTGTATATGTACATAACACGTATACACATGCACTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_f02.g1 MSMg01no547_f02.g1 CHROMAT_FILE:
MSMg01no547_f02.g1 PHD_FILE: MSMg01no547_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:55 2005
         (670 letters)



>mm_chr7_51678094_51679163
          Length = 1070

 Score = 1123 bits (581), Expect = 0.0
 Identities = 641/669 (95%), Gaps = 15/669 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagacctctttttacttattttgaggtagggtcttcctaagttgctcaggctgtcctt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 214 cccagacctctttttacttattttgaggtagggtcttcctaaattgctcaggctgtcctt 273

                                                                       
Query: 61  caattcattctgtaaaccagcctagccttgaacttacaatcttcctgtcggagcctctca 120
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 274 caattcattctgtaaaccagcctagccttgaacttacaattttcctgtgggagcctctca 333

                                                                       
Query: 121 agcagctgggatccctgtgaccccaggcacagtcttattggacagactggtatgttggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agcagctgggatccctgtgaccccaggcacagtcttattggacagactggtatgttggtt 393

                                                                       
Query: 181 gtcctcaagaacaccccatcctctggctctgctggctgatccttcacagtgtctaacctt 240
           ||||||||||||||||||||||||||||||||||||||             |||||||||
Sbjct: 394 gtcctcaagaacaccccatcctctggctctgctggctg-------------tctaacctt 440

                                                                       
Query: 241 ttcctgagtctgacaagaagcggcttaagcatgggaggacttacttggctcacagtttgc 300
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 441 ttcctgagtctgacaagaagcggcttaagcatgggaggacttgcttggttcacagttcgc 500

                                                                       
Query: 301 aggtccatcatggaaaggaaggcatggaggtggccacgtttcgtggttgcgtttgcagag 360
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 501 aggtccatcatggaaaggaaggcatggaggtggccacgtttcatggctgcgtttgcagag 560

                                                                       
Query: 361 catgcag-cagcttgttggcatggctgtagctcttcacatcttgacagaacaggaagcag 419
           |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catg-aggcagcttgctggcatggctgtagctcttcacatcttgacagaacaggaagcag 619

                                                                       
Query: 420 agagaactagaggcagatcgtgttataactgtcaaggctaaggcatcctagatctcatgg 479
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agagaactagaggcggatcgtgttataactgtcaaggctaaggcatcctagatctcatgg 679

                                                                       
Query: 480 ggcgaggcaagacaatcaggagtctatgattatcctcaattacctagggagtctgaggct 539
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 ggtgaggcaagacaatcaggagtctatgcttatcctcaattacctagggagtctgaggct 739

                                                                       
Query: 540 agcctgggctacttgagaccctgcctcaaagacaagcagaagatgctaactgcccatgat 599
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcctgggctacttgaaaccctgcctcaaagacaagcagaagatgctaactgcccatgat 799

                                                                       
Query: 600 gcaacactctttccacaaagacactgtcatagtgatgccagccataatgatgtgtatatg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gcaacactctttccacaaagacactgtcatagtgatgccagccataatgatgtgtatatg 859

                    
Query: 660 tacataaca 668
           |||||||||
Sbjct: 860 tacataaca 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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