BAC Information

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BAC

Clone NameMSMg01-547N22
Chromosome7 (Build37)
Map Location 25,278,082 - 25,278,754
singlet/doubletsinglet
Overlap geneCadm4
Upstream geneEG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur
Downstream geneZfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547N22.T7 (MSMg01no547_n22.b1)MSMg01-547N22.TJ (MSMg01no547_n22.g1)
ACCAG612353AG612354
length747741
length of high quality
(start - end)		674 (37 - 710)667 (68 - 734)
definitionCHROMAT_FILE: MSMg01no547_n22.b1 PHD_FILE: MSMg01no547_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:37 2005CHROMAT_FILE: MSMg01no547_n22.g1 PHD_FILE: MSMg01no547_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCAAC
ATCCATTTTGGGTCCTAGTGACAGAGCATAAGAGTAACAGAACCCAGCAC
TTGGAAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTA
CAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGA
AAAACCAAAAAAAAAAAAAAAAAATAAAATAAAGTAACAGAACTAAGTTG
AAAGAGCATGAGTCTTTGGTGGCAATGTGGAGCAGCCACGCCTTTTAACT
CTGGACTGCTTTTATGCGGATAGTATCTAAGCCACCCTCTGAATTTTACC
TCCCAGAGTGACAAACAAAGCATTCCGCCCTTACCTATGCGGTTTATAGG
TTCAGTAGGTGCCACAAACCACCCACTCCGTTGCTCAGGCCAAAGGACAG
CAAGCCACCCAAGCGTCCGACCGTTCCCTCAGCCCTCACACCCACCCCTC
CAGAACCGTCTGCATATTTTACCTCTAAAATATATCTGAATCTGTTTGGC
CTTGTCTGCCTCACCTCCGAGCACCCTCTCCTGGTATTGTCCCTCTCTCA
TCTGGATCTCTCAAGATCCAGACCTGTTTGTGGATCTCAACTTCCAAGCC
TGCCTCTCACACCTAGGCTGACCTGTAACACGTGACCCTCTTAACATCAC
CTCCTGACAGCAGGCATGCCACCTGGCCCTGATTATATGGATTCCTT

AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGAAAGCCAAGACTACATAGTGAGACCATGT
TTCAAAAGAAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAAGA
AAGAGGGGGTAGAGGGGAAACAAACACCCTGCCTTTCAGTCTCTCTAAAG
CAGAATTGAAATCTATAATATAACTGCAGTCCTTCTCTTGGGCCCGTCAC
CCCAACAGAAACTCCCCCAAACTATATAGACTAGTAGAACATATGCTCCC
CCAAACTATATAGACTAGTAGGACAGTTCATAATATCTACAAACTGGAAA
CAACCCAAATAAATATGAACAGCCAAATGGAATGAGGAGGCTGAGATCTA
GCCACACAATGGAGTATTATGCAGCAGCGGGAAATGACAGCTGACAGTTA
CCTGCAGTGGCCTTGAAAGAATCTCACAAAAACAGTGTTGAGCAAAACAG
TAAAGGCACACAACAGAACAGGTTGTATGATTCCATTCAAACAACGTATG
AAAGTTGCTAACAGCTAGTATGTACAATTAGAAGAGGGAAGAGTGGTCGT
GTTTGGGAACAAGTGACCAAAAGAGGAAATACGGGGTGTTTGGAAATAAC
TAGATGTTGAGTTATGAGATCTAAGAACTCACTGATCCATTTTTGCTCCC
CCCCACCCAAACTTTTTGTTGTTGTTTTCTTTTGTTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_n22.b1 MSMg01no547_n22.b1 CHROMAT_FILE:
MSMg01no547_n22.b1 PHD_FILE: MSMg01no547_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:37 2005
         (674 letters)



>mm_chr7_25277685_25278758
          Length = 1074

 Score = 1263 bits (653), Expect = 0.0
 Identities = 667/673 (99%), Gaps = 3/673 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggaattcaacatccattttgggtcctagtgacagagcataagagtaacagaacccagcac 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ggaattcaacatccattttgggtcctagtgacagagcataagagtaacagaacccagcac 1011

                                                                        
Query: 65   ttggaaggcagaggcaggcggatttctgagttcaaggccagcctggtctacaaagtgagt 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 ttggaaggcagaggcaggcggatttctgagttcaaggccagcctggtctacaaagtgagt 951

                                                                        
Query: 125  tccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaa 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  tccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaa 891

                                                                        
Query: 185  aaaataaaataa---agtaacagaactaagttgaaagagcatgagtctttggtggcaatg 241
            |||| |||| ||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  aaaaaaaaaaaaaagagtaacagaactaagttgaaagagcatgagtctttggtggcaatg 831

                                                                        
Query: 242  tggagcagccacgccttttaactctggactgcttttatgcggatagtatctaagccaccc 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  tggagcagccacgccttttaactctggactgcttttatgcggatagtatctaagccaccc 771

                                                                        
Query: 302  tctgaattttacctcccagagtgacaaacaaagcattccgcccttacctatgcggtttat 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  tctgaattttacctcccagagtgacaaacaaagcattccgcccttacctatgcggtttat 711

                                                                        
Query: 362  aggttcagtaggtgccacaaaccacccactccgttgctcaggccaaaggacagcaagcca 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  aggttcagtaggtgccacaaaccacccactccgttgctcaggccaaaggacagcaagcca 651

                                                                        
Query: 422  cccaagcgtccgaccgttccctcagccctcacacccacccctccagaaccgtctgcatat 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  cccaagcgtccgaccgttccctcagccctcacacccacccctccagaaccgtctgcatat 591

                                                                        
Query: 482  tttacctctaaaatatatctgaatctgtttggccttgtctgcctcacctccgagcaccct 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  tttacctctaaaatatatctgaatctgtttggccttgtctgcctcacctccgagcaccct 531

                                                                        
Query: 542  ctcctggtattgtccctctctcatctggatctctcaagatccagacctgtttgtggatct 601
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  ctcctggtatcgtccctctctcatctggatctctcaagatccagacctgtttgtggatct 471

                                                                        
Query: 602  caacttccaagcctgcctctcacacctaggctgacctgtaacacgtgaccctcttaacat 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  caacttccaagcctgcctctcacacctaggctgacctgtaacacgtgaccctcttaacat 411

                         
Query: 662  cacctcctgacag 674
            |||||||||||||
Sbjct: 410  cacctcctgacag 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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