BAC Information

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BAC

Clone NameMSMg01-548B05
Chromosome7 (Build37)
Map Location 52,317,369 - 52,396,089
singlet/doubletdoublet
Overlap geneNosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l
Upstream geneKlk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2
Downstream geneAldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548B05.T7 (MSMg01no548_b05.b1)MSMg01-548B05.TJ (MSMg01no548_b05.g1)
ACCAG612510AG612511
length741735
length of high quality
(start - end)		586 (47 - 632)439 (75 - 513)
definitionCHROMAT_FILE: MSMg01no548_b05.b1 PHD_FILE: MSMg01no548_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:54 2005CHROMAT_FILE: MSMg01no548_b05.g1 PHD_FILE: MSMg01no548_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,317,369 - 52,317,952)(52,395,658 - 52,396,089)
sequence
NACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGGTTCCTAGAATAACTGGGCGGTACCACAATAAATCTGTTT
CCTGAGGATAACTTGAACAGTTTAGTCTCGAGATCTTTGAAAATTGTTTT
TTCTATAATAGGGGAAAGAGTTCTCACTTATCGACTCTTAAGATGCAATG
GGGGAAAAATAAGTAATATATTTGGGGAACTGGATATCAGTCTCTTCGGG
TGACAGAGTTAAGTCTCCAAACTCAAACTTGAAGAGACTCAAAGCAACTG
CCCCGCTCTGGGTAATGCCTAGAACAGGCTAGGGTGTCTCCCAGAGTCAA
ACCACTTTCGCTCACCGGAACCTTCGAGTAGTCACTCACGTTTCCGGGGG
GATGGAAGAGAAGAAGAAAGCACTTACCAAGCCAGGCGAAGCGCCTCCGC
GACTAGGGGCAGAGTTATTTCCGGTCTCCTCCTGTCGGGCGGAAGTAGGA
GGAGTAGAGTTTAAAAACAGAACTCTTTTTCCGGTTCGGGACGTAGTTGA
AGCAACGACAAGCCGGATAACCGCTCTTGAGGTAAGCTGCANGCGGTGAG
GGGTCGCGTCGCCAAGTTTCCTTCTTGTGGGAGAAATTTGCAGTTCTGAG
GGAGGTAGGATAAGGTTTCGCACTCCGAATCCCTGTCAATCATTAACAGC
GCTCTTGAACGCTTANGTTGGAAGACGAACTACTTTTCCCA

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTGATCCACCTGGGATTATATATG
TATGGACACGTCCACCCTGTGCTCTTCCTTAGTCTCTGCCAAATCCTGTT
TACCATGTGAGGTCATAAAACAAGCCAGAGTGTCTGTTCACCCAGGCTGA
GCATGAAGGCCCCAGGCAAGAGAAGTCGAGAAGAGCCGTCAGAATGGCCT
AGACTTTAGCAGTAACCCTGATCTGTACTGGTTGACTCACTGCACATTGT
CAAGGCCTCCCTCCTTCCCTCTCTCTCTCTCTCTTTCCCTCTCTCTCCCC
GGTCTGCTCACTAATGTTGCCCAGTGAACTGGGCTAACAGAGGCTGTCTT
AGTCCATTTTCTTTTCTCGTATGTTTTGGTTTGGTGTTCTATTTGCTTGG
TTTGGTTTCAAGAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTNNNNTTTTNNNTNNTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_b05.b1 MSMg01no548_b05.b1 CHROMAT_FILE:
MSMg01no548_b05.b1 PHD_FILE: MSMg01no548_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:54 2005
         (586 letters)



>mm_chr7_52317166_52318152
          Length = 987

 Score = 1100 bits (569), Expect = 0.0
 Identities = 580/584 (99%), Gaps = 1/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttggttcctagaataactgggcggtaccacaataaatctgtttcctgaggat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttggttcctagaataactgggcggtaccacaataaatctgtttcctgaggat 263

                                                                       
Query: 64  aacttgaacagtttagtctcgagatctttgaaaattgttttttctataataggggaaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacttgaacagtttagtctcgagatctttgaaaattgttttttctataataggggaaaga 323

                                                                       
Query: 124 gttctcacttatcgactcttaagatgcaatggggg-aaaaataagtaatatatttgggga 182
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gttctcacttatcgactcttaagatgcaatgggggaaaaaataagtaatatatttgggga 383

                                                                       
Query: 183 actggatatcagtctcttcgggtgacagagttaagtctccaaactcaaacttgaagagac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actggatatcagtctcttcgggtgacagagttaagtctccaaactcaaacttgaagagac 443

                                                                       
Query: 243 tcaaagcaactgccccgctctgggtaatgcctagaacaggctagggtgtctcccagagtc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaagcaactgccccgctctgggtaatgcctagaacaggctagggtgtctcccagagtc 503

                                                                       
Query: 303 aaaccactttcgctcaccggaaccttcgagtagtcactcacgtttccggggggatggaag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaccactttcgctcaccggaaccttcgagtagtcactcacgtttccggggggatggaag 563

                                                                       
Query: 363 agaagaagaaagcacttaccaagccaggcgaagcgcctccgcgactaggggcagagttat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 agaagaagaaagcacttaccaagccaggcgaagcgcctccgcgactaggggcagaattat 623

                                                                       
Query: 423 ttccggtctcctcctgtcgggcggaagtaggaggagtagagtttaaaaacagaactcttt 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 ttccggtctcctcctgtcgggcggaagtaggaggagtagagtttaaaaacagtactcttt 683

                                                                       
Query: 483 ttccggttcgggacgtagttgaagcaacgacaagccggataaccgctcttgaggtaagct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttccggttcgggacgtagttgaagcaacgacaagccggataaccgctcttgaggtaagct 743

                                                       
Query: 543 gcangcggtgaggggtcgcgtcgccaagtttccttcttgtggga 586
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcaggcggtgaggggtcgcgtcgccaagtttccttcttgtggga 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space:   562752
Effective search space used:   562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_b05.g1 MSMg01no548_b05.g1 CHROMAT_FILE:
MSMg01no548_b05.g1 PHD_FILE: MSMg01no548_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:54 2005
         (439 letters)



>mm_chr7_52395658_52396496
          Length = 839

 Score =  835 bits (432), Expect = 0.0
 Identities = 432/432 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgatccacctgggattatatatgtatggacacgtccaccctgtgctcttccttagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttgtgatccacctgggattatatatgtatggacacgtccaccctgtgctcttccttagtc 373

                                                                       
Query: 61  tctgccaaatcctgtttaccatgtgaggtcataaaacaagccagagtgtctgttcaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tctgccaaatcctgtttaccatgtgaggtcataaaacaagccagagtgtctgttcaccca 313

                                                                       
Query: 121 ggctgagcatgaaggccccaggcaagagaagtcgagaagagccgtcagaatggcctagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggctgagcatgaaggccccaggcaagagaagtcgagaagagccgtcagaatggcctagac 253

                                                                       
Query: 181 tttagcagtaaccctgatctgtactggttgactcactgcacattgtcaaggcctccctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttagcagtaaccctgatctgtactggttgactcactgcacattgtcaaggcctccctcc 193

                                                                       
Query: 241 ttccctctctctctctctctttccctctctctccccggtctgctcactaatgttgcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttccctctctctctctctctttccctctctctccccggtctgctcactaatgttgcccag 133

                                                                       
Query: 301 tgaactgggctaacagaggctgtcttagtccattttcttttctcgtatgttttggtttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tgaactgggctaacagaggctgtcttagtccattttcttttctcgtatgttttggtttgg 73

                                                                       
Query: 361 tgttctatttgcttggtttggtttcaagaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tgttctatttgcttggtttggtttcaagaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 13

                       
Query: 421 tgtgtgtgtgtg 432
           ||||||||||||
Sbjct: 12  tgtgtgtgtgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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