BAC Information

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BAC

Clone NameB6Ng01-002A17
Chromosome8 (Build37)
Map Location 70,980,365 - 71,106,170
singlet/doubletdoublet
Overlap gene4732435N03Rik
Upstream geneNat1, Nat2, LOC100041265, Nat3, Psd3, Sh2d4a, LOC665510
Downstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002A17.bB6Ng01-002A17.g
ACCDH840187DH840188
length1,0121,117
definitionDH840187|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A17, 5' end.DH840188|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,105,159 - 71,106,170)(70,980,365 - 70,981,506)
sequence
gaattctgtggaagaaaatagatggcagtgataattacattatgaaatgc
agtaggagggagaaatgttgagagtaattacaggtacagctgtgctagga
gacaggacctgctgagaactccagtatgccagacctctggaccatgcctt
ccaagagagtgggaaattagatgtcagcatcatccaagttctttaaggtc
tgtgtacctaccagagttcacactcatctgtatcatcactcttaacgacg
tatttgattttatttctgagacacagaagcttctgaaaaatacaattatt
ttctgttcataataatctgtattaatctcattttaagaatataggtttaa
aatgattttaagattctctttggagtcatgtgcttcctcccagaaattaa
atagacaacttgttaacttaaggcaatgcaactttatttgaagatacttt
agcacatgaaaatatgtaagtcaaaataaatgcaagataactcagcaaag
gtacttcaggaagacattcccaggaggctgcatttgtttgaaatatctct
ggggttttttattcagacttctcttgaagcatatagcatagacttttcac
tactgttggcaaattgatgtctctgtaacagagatctgtgaaaaaaagtg
aatatcaaaactatattattatcctgataacttatttaatgtagttgttc
tatttgtgagagaaatttaaatttctttggagaacagagagactattttt
aaaaaattcacatgtgttctatgtttacatctttaaccctccttctcatc
tctccaacctcttctgagcttggcatcaaattcatgaatttatttattgt
tgtttcatacacacacacacacacacacacacacacacacacacacacat
gtatatgtatatatacatatatatacgtgtgtgtatatatatatgaatca
aacatatatgaatacaattccatgtatatgtatatatgtgtatgtaataa
atatgtatgtgt
gaattcaacacaaagctcagtgcctatgagacagtttgaacagagagata
actactgctctcctaggttttagagacaaataataaatcctataggtaat
aaattatataggcagaaatgtgatgttctcattctgcacgctctacagag
atacagacttgtcacagccatgctagatgccatcattgttcgttctcagt
tcctccttttatagggtaggtgtggaaagccttttggggtaccgcttggc
aggagtctgacattggccaaggacaaggaaatgggctttaggcagaaatc
tgacattggaagtaagctcaggcaggaatctgacattagggcataataag
gaagtaagttttggcaagaatctaactttaggctgtaatagagaagtaag
gtaaggcaagaattttagtcttagggtggaacagaagaactaggcttcag
gcaagattttggacttggaaaaggaaatgggctcaaatattttggtcatt
atgacaagcccttttaaacaactgtcatgggagtaatcacaggactttgc
ttactgctttgttagttccttattgtactgctcatccaaaatactcgcat
ggaattaaaatggcattaaaaagtggattggaaagttaaatttgccttca
gactcagaattgactggggtcatgctacaatgttttctaactatcttttt
ttttttttttttaatcctcactcccacactggagaacctattgactggct
gagggggcttggtcaggtaggtgacttaccctgggttacccagcactgtg
gatggtagagcacgtttccacctgggtctaggaagggtcttggcagtcat
gcacagcagttttcttatttacagaggagcaggccaattctcagaagaag
tttaaggaagtcattgtaagtcacatagcaccccatgcttatgttgcctg
cctcacagctttaagttttatatcactgttaccattcatcccatggtctt
attgtttattcttgacagctgtgtttgagtgtgatagctccatagctcat
atcttacacattatcccatgagtgtgctgtctttgagtgtggaacattga
gagcgatctggctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_71105159_71106170
seq2: B6Ng01-002A17.b_47_1058 (reverse)

seq1  ACACATACATATATA-TACATACACATATATACATATACATGGAATTTGT  49
      |||||||||||| || ||||||||||||||||||||||||||||| ||||
seq2  ACACATACATATTTATTACATACACATATATACATATACATGGAA-TTGT  49

seq1  ATTCATATATGTTTGATTCATATATATATACACACACGTATATATATGTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATATGTTTGATTCATATATATATACACACACGTATATATATGTA  99

seq1  TATATACATATACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  149

seq1  TGTGTATGAAACAACAATAAATAAATTCATGAATTTGATGCCAAGCTCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGAAACAACAATAAATAAATTCATGAATTTGATGCCAAGCTCAG  199

seq1  AAGAGGTTGGAGAGATGAGAAGGAGGGTTAAAGATGTAAACATAGAACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTGGAGAGATGAGAAGGAGGGTTAAAGATGTAAACATAGAACAC  249

seq1  ATGTGAATTTTTTAAAAATAGTCTCTCTGTTCTCCAAAGAAATTTAAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTTTTTAAAAATAGTCTCTCTGTTCTCCAAAGAAATTTAAATT  299

seq1  TCTCTCACAAATAGAACAACTACATTAAATAAGTTATCAGGATAATAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACAAATAGAACAACTACATTAAATAAGTTATCAGGATAATAATA  349

seq1  TAGTTTTGATATTCACTTTTTTTCACAGATCTCTGTTACAGAGACATCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGATATTCACTTTTTTTCACAGATCTCTGTTACAGAGACATCAA  399

seq1  TTTGCCAACAGTAGTGAAAAGTCTATGCTATATGCTTCAAGAGAAGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAACAGTAGTGAAAAGTCTATGCTATATGCTTCAAGAGAAGTCTG  449

seq1  AATAAAAAACCCCAGAGATATTTCAAACAAATGCAGCCTCCTGGGAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAACCCCAGAGATATTTCAAACAAATGCAGCCTCCTGGGAATGT  499

seq1  CTTCCTGAAGTACCTTTGCTGAGTTATCTTGCATTTATTTTGACTTACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAAGTACCTTTGCTGAGTTATCTTGCATTTATTTTGACTTACAT  549

seq1  ATTTTCATGTGCTAAAGTATCTTCAAATAAAGTTGCATTGCCTTAAGTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATGTGCTAAAGTATCTTCAAATAAAGTTGCATTGCCTTAAGTTA  599

seq1  ACAAGTTGTCTATTTAATTTCTGGGAGGAAGCACATGACTCCAAAGAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTCTATTTAATTTCTGGGAGGAAGCACATGACTCCAAAGAGAA  649

seq1  TCTTAAAATCATTTTAAACCTATATTCTTAAAATGAGATTAATACAGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATCATTTTAAACCTATATTCTTAAAATGAGATTAATACAGATT  699

seq1  ATTATGAACAGAAAATAATTGTATTTTTCAGAAGCTTCTGTGTCTCAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAACAGAAAATAATTGTATTTTTCAGAAGCTTCTGTGTCTCAGAA  749

seq1  ATAAAATCAAATACGTCGTTAAGAGTGATGATACAGATGAGTGTGAACTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCAAATACGTCGTTAAGAGTGATGATACAGATGAGTGTGAACTC  799

seq1  TGGTAGGTACACAGACCTTAAAGAACTTGGATGATGCTGACATCTAATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTACACAGACCTTAAAGAACTTGGATGATGCTGACATCTAATTT  849

seq1  CCCACTCTCTTGGAAGGCATGGTCCAGAGGTCTGGCATACTGGAGTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCTTGGAAGGCATGGTCCAGAGGTCTGGCATACTGGAGTTCTC  899

seq1  AGCAGGTCCTGTCTCCTAGCACAGCTGTACCTGTAATTACTCTCAACATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCCTGTCTCCTAGCACAGCTGTACCTGTAATTACTCTCAACATT  949

seq1  TCTCCCTCCTACTGCATTTCATAATGTAATTATCACTGCCATCTATTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCTACTGCATTTCATAATGTAATTATCACTGCCATCTATTTTC  999

seq1  TTCCACAGAATTC  1012
      |||||||||||||
seq2  TTCCACAGAATTC  1012

seq1: chr8_70980365_70981506
seq2: B6Ng01-002A17.g_66_1182

seq1  GAATTCAACACAAAGCTCAGTGCCTATGAGACAGTTTGAACAGAGAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAAAGCTCAGTGCCTATGAGACAGTTTGAACAGAGAGATA  50

seq1  ACTACTGCTCTCCTAGGTTTTAGAGACAAATAATAAATCCTATAGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGCTCTCCTAGGTTTTAGAGACAAATAATAAATCCTATAGGTAAT  100

seq1  AAATTATATAGGCAGAAATGTGATGTTCTCATTCTGCACGCTCTACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATAGGCAGAAATGTGATGTTCTCATTCTGCACGCTCTACAGAG  150

seq1  ATACAGACTTGTCACAGCCATGCTAGATGCCATCATTGTTCGTTCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACTTGTCACAGCCATGCTAGATGCCATCATTGTTCGTTCTCAGT  200

seq1  TCCTCCTTTTATAGGGTAGGTGTGGAAAGCCTTTTGGGGTACCGCTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTTATAGGGTAGGTGTGGAAAGCCTTTTGGGGTACCGCTTGGC  250

seq1  AGGAGTCTGACATTGGCCAAGGACAAGGAAATGGGCTTTAGGCAGAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTGACATTGGCCAAGGACAAGGAAATGGGCTTTAGGCAGAAATC  300

seq1  TGACATTGGAAGTAAGCTCAGGCAGGAATCTGACATTAGGGCATAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTGGAAGTAAGCTCAGGCAGGAATCTGACATTAGGGCATAATAAG  350

seq1  GAAGTAAGTTTTGGCAAGAATCTAACTTTAGGCTGTAATAGAGAAGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGTTTTGGCAAGAATCTAACTTTAGGCTGTAATAGAGAAGTAAG  400

seq1  GTAAGGCAAGAATTTTAGTCTTAGGGTGGAACAGAAGAACTAGGCTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCAAGAATTTTAGTCTTAGGGTGGAACAGAAGAACTAGGCTTCAG  450

seq1  GCAAGATTTTGGACTTGGAAAAGGAAATGGGCTCAAATATTTTGGTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTTGGACTTGGAAAAGGAAATGGGCTCAAATATTTTGGTCATT  500

seq1  ATGACAAGCCCTTTTAAACAACTGTCATGGGAGTAATCACAGGACTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGCCCTTTTAAACAACTGTCATGGGAGTAATCACAGGACTTTGC  550

seq1  TTACTGCTTTGTTAGTTCCTTATTGTACTGCTCATCCAAAATACTCGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTTTGTTAGTTCCTTATTGTACTGCTCATCCAAAATACTCGCAT  600

seq1  GGAATTAAAATGGCATTAAAAAGTGGATTGGAAAGTTAAATTTGCCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAAATGGCATTAAAAAGTGGATTGGAAAGTTAAATTTGCCTTCA  650

seq1  GACTCAGAATTGACTGGGGTCATGCTACAATGTTTTCTAACTATCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAATTGACTGGGGTCATGCTACAATGTTTTCTAACTATCTTTTT  700

seq1  TTTTTTTTTTTTAATCCTCACTCCCACACTGGAGAACCTATTGACTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAATCCTCACTCCCACACTGGAGAACCTATTGACTGGCT  750

seq1  GAGGGGGCTTGGTCAGGTAGGTGACTTACCCTGGGTTACCCAGCACTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGCTTGGTCAGGTAGGTGACTTACCCTGGGTTACCCAGCACTGTG  800

seq1  GATGGTAGAGCACGTTTCCACCTGGGTCTAGGAAGGGTCTTGGCAGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAGAGCACGTTTCCACCTGGGTCTAGGAAGGGTCTTGGCAGTCAT  850

seq1  GCACAGCAGGTTTCTTATTTACAGAGGAGCAGGCCAATTCTCAGAAGAAG  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGTTTTCTTATTTACAGAGGAGCAGGCCAATTCTCAGAAGAAG  900

seq1  TTTAAGGAAGTCATTGTAAGTCACATAGCACCCCATGCTTATGTTGCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAAGTCATTGTAAGTCACATAGCACCCCATGCTTATGTTGCCTG  950

seq1  CCTCACAGCTTTAAGTTTTATATCACTGTTACCATTCCATCCCATGGGTC  1000
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  CCTCACAGCTTTAAGTTTTATATCACTGTTACCATT-CATCCCAT-GGTC  998

seq1  TTATTTGTTTATTCTTTGGAACAAGCTGTGGTTTGAGTGTGATAGGCCCC  1050
      ||| ||||||||||||  ||   |||||| |||||||||||||||  | |
seq2  TTA-TTGTTTATTCTT--GA--CAGCTGT-GTTTGAGTGTGATAG--CTC  1040

seq1  CATAGCCTCATATCTTTACACAATTAATCCCCAGTGGGTGGTGCTGTCTT  1100
      ||||| |||||||| |||||||  | |||||   || || ||||||||||
seq2  CATAG-CTCATATC-TTACACA--TTATCCC--ATGAGT-GTGCTGTCTT  1083

seq1  TGGAAGGTTGTGGAACATTGAGGAGGCAGAATCTGGCTGGAA  1142
      ||  ||  ||||||||||||||   |    ||||||||||||
seq2  TG--AG--TGTGGAACATTGAGAGCG----ATCTGGCTGGAA  1117