BAC Information

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BAC

Clone NameB6Ng01-002E03
Chromosome8 (Build37)
Map Location 63,305,014 - 63,432,308
singlet/doubletdoublet
Overlap gene2700029M09Rik, Clcn3
Upstream geneAadat, Mfap3l, LOC100040679
Downstream geneB230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002E03.bB6Ng01-002E03.g
ACCDH840335DH840336
length1,1371,125
definitionDH840335|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E03, 5' end.DH840336|Mus musculus domesticus DNA, BAC clone: B6Ng01-002E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,305,014 - 63,306,179)(63,431,166 - 63,432,308)
sequence
gaattccctgagcacacttattcatgagctatactggattctttggcttc
caaccttaccaagcaggccaccagagactgctgaagaagatgagctaaat
cctatgataactagagtggcaggtaattagaaatgtaagtcgtgggggtg
caggagtgacagatgatgcattgtacattaaacataagtgatacttgcag
tgcacacgccctggtttatgctctctggctggagtctgagagcttccaat
gcatatataaatactgctcctgtcagagatctgccctcaatgataatgtc
tactcttcatcgagcaccttggccctgccatttatctcattccctgttca
tctcaattgctcagggagtattctgtgtccatttagtaaacaaggaaagt
gagccttggagagatttggaaatctgtccaaagacacagaaataagaagc
tctatgaccaggtccagtctagggctgtcaacatcaaagtctatgcatct
tcaacaatgaagctaatggctagtgtttgtcacagagtgatgtcaatgac
atatttttttaaaaaacattacaagtttaacccctatgtcatgacttatg
tgtcatggtcccagcacttgggaggcaaaggcaagaggatctttgtgaat
ttgaggacagcttattctacatactatagtccaggccagccaaagctaca
ctgtgagaccctgtccaaaaacaacatgaaaagacaagtgaagtgttatt
tactttgttgattagaaatctggtgtgatgtttcaacgacttcaggggat
tctcttaaaaaattttattacttattaattgtacattataaagagttcac
tatggcattcgcacacctgcattattataccttgtgtgtgttgacttgtg
gttggaactatgtagggaataagtgcttaagagctacatactaacttctg
ctcaaagtatttagaagctataaatgtattaaaatattcatataatgtat
ttttatttgaaaatacaaaaattgttgaaattggtacagggaatagttct
ttgtaaggagacttggacaatgatttattctctgatccggggccattttc
tctctcaccagcagagcctcttcccccctgggcatag
gaattctgtgcttagtaaaaggtttctttttatattttgaggaaaaacta
agatcatgtcccatatattgtgctttcctttatgaattgtatatgtgtgc
atgtataaattaggatttagtaaaaaaataaataaaagaaattattcttt
gtacttttagaacatttcttctaacattataaaagtataaaaagtacaaa
aaataatttctcctaatgatgttctgacatacgtgtgtgtgtgtgtgtgt
gtgtatctaaaagtataaggaataaattctcctaaatttttactccctgg
tatttttttccttttcctgatagagtttccctgtgtttctgtcatccgtt
tcctggtaatattcgtattgaacagtgattattcaaatgtcacattattt
actaatatgggaaatggcaaaggcaggcagaccatactttctctgagtga
aaacagcatccgtttgttagtactgattaactagaagggttgggcagcac
tatctgatagtcttggcagtgcaaatttatagactgcctgtgtaaaaatg
tacaagaaataagaaatgtcataacttatgtcaaatgacacgtacagatt
accaagagagaaattgaaaaaaatatttctgggacattttcttaaatagt
tccctggaatcatcttgaaggcctgaccactgtcagaagctcagacgtgg
tcctgattctgatgagaccttctctgttaatacaagtggtggttttagga
agcactgcgtttgctcagttatgtatttgccttacttgactgtcccatat
cattaagaacatagggtagtgtcctagtgtctatgtgtgagaaagcattt
gctttccataatttatgaccctgtgaaaccataggtcagcacaaaggaac
tggtgatatgatataggaaaatagcttaaatcagcaaagtgcatcagctt
tcctgtgagacaaaatgcagtaattagaaatagatctcagctggtaaagg
aaaaacggtgaaattcaaagtataaaattgtaaaggctgtggtagtaaag
ctggaggtagggattagctctgtgggtaattaggcttatcccacttttca
agggatgctaatatagcttttactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63305014_63306179
seq2: B6Ng01-002E03.b_47_1183

seq1  GAATTCCCTGAGCACACTTATTCATGAGCTATACTGGATTCTTTGGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGCACACTTATTCATGAGCTATACTGGATTCTTTGGCTTC  50

seq1  CAACCTTACCAAGCAGGCCACCAGAGACTGCTGAAGAAGATGAGCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTACCAAGCAGGCCACCAGAGACTGCTGAAGAAGATGAGCTAAAT  100

seq1  CCTATGATAACTAGAGTGGCAGGTAATTAGAAATGTAAGTCGTGGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGATAACTAGAGTGGCAGGTAATTAGAAATGTAAGTCGTGGGGGTG  150

seq1  CAGGAGTGACAGATGATGCATTGTACATTAAACATAAGTGATACTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGACAGATGATGCATTGTACATTAAACATAAGTGATACTTGCAG  200

seq1  TGCACACGCCCTGGTTTATGCTCTCTGGCTGGAGTCTGAGAGCTTCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGCCCTGGTTTATGCTCTCTGGCTGGAGTCTGAGAGCTTCCAAT  250

seq1  GCATATATAAATACTGCTCCTGTCAGAGATCTGCCCTCAATGATAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATAAATACTGCTCCTGTCAGAGATCTGCCCTCAATGATAATGTC  300

seq1  TACTCTTCATCGAGCACCTTGGCCCTGCCATTTATCTCATTCCCTGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCATCGAGCACCTTGGCCCTGCCATTTATCTCATTCCCTGTTCA  350

seq1  TCTCAATTGCTCAGGGAGTATTCTGTGTCCATTTAGTAAACAAGGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTGCTCAGGGAGTATTCTGTGTCCATTTAGTAAACAAGGAAAGT  400

seq1  GAGCCTTGGAGAGATTTGGAAATCTGTCCAAAGACACAGAAATAAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGGAGAGATTTGGAAATCTGTCCAAAGACACAGAAATAAGAAGC  450

seq1  TCTATGACCAGGTCCAGTCTAGGGCTGTCAACATCAAAGTCTATGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACCAGGTCCAGTCTAGGGCTGTCAACATCAAAGTCTATGCATCT  500

seq1  TCAACAATGAAGCTAATGGCTAGTGTTTGTCACAGAGTGATGTCAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATGAAGCTAATGGCTAGTGTTTGTCACAGAGTGATGTCAATGAC  550

seq1  ATATTTTTTTAAAAAACATTACAAGTTTAACCCCTATGTCATGACTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTAAAAAACATTACAAGTTTAACCCCTATGTCATGACTTATG  600

seq1  TGTCATGGTCCCAGCACTTGGGAGGCAAAGGCAAGAGGATCTTTGTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGTCCCAGCACTTGGGAGGCAAAGGCAAGAGGATCTTTGTGAAT  650

seq1  TTGAGGACAGCTTATTCTACATACTATAGTCCAGGCCAGCCAAAGCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACAGCTTATTCTACATACTATAGTCCAGGCCAGCCAAAGCTACA  700

seq1  CTGTGAGACCCTGTCCAAAAACAACATGAAAAGACAAGTGAAGTGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGACCCTGTCCAAAAACAACATGAAAAGACAAGTGAAGTGTTATT  750

seq1  TACTTTGTTGATTAGAAATCTGGTGTGATGTTTCAACGACTTCAGGGGGA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACTTTGTTGATTAGAAATCTGGTGTGATGTTTCAACGACTTCA-GGGGA  799

seq1  TTCTCTTAAAAAAATTTTATTACTTATTAATTGTACATTATAAAGAGTTT  850
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTCTT-AAAAAATTTTATTACTTATTAATTGTACATTATAAAGAG-TT  847

seq1  CACTATGGCATTCGCACACCTGCATTTATTATACCTTGTGTGTGTTGACT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACTATGGCATTCGCACACCTGCA-TTATTATACCTTGTGTGTGTTGACT  896

seq1  TGTGGGTTGGAACTATGTAGGGAATAAGTGCTTAAGAGCTACATACTAAC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT-GGTTGGAACTATGTAGGGAATAAGTGCTTAAGAGCTACATACTAAC  945

seq1  TCCTGCTCAAAAGTATTTTAGAAGGCTATAAATTGTATTAAAATATTCAT  1000
      | |||||| |||||| ||||||| |||||||| |||||||||||||||||
seq2  TTCTGCTC-AAAGTA-TTTAGAA-GCTATAAA-TGTATTAAAATATTCAT  991

seq1  ATAATTGTATTTTTAATTTGAAAAATACAAAAATTGTTGAAATTGGGAAC  1050
      |||| ||||||||| ||||| ||||||||||||||||||||||||| |  
seq2  ATAA-TGTATTTTT-ATTTG-AAAATACAAAAATTGTTGAAATTGGTA--  1036

seq1  CAAGGGATTAGTTCTTTTGTTAAGGAGACTTGGGACAATGATTTAATTTC  1100
        ||||| |||||||||   ||||||||||| ||||||||||||| | ||
seq2  -CAGGGAATAGTTCTTT--GTAAGGAGACTT-GGACAATGATTTATTCTC  1082

seq1  CTTCTTGATCCCGTGGCCCCATTTTCTCTCTACACAGCAGAGCCTTCCTC  1150
           ||||||   ||  |||||||||||||   |||||||||||  || 
seq2  -----TGATCC---GGGGCCATTTTCTCTCTCACCAGCAGAGCCT--CTT  1122

seq1  CACCCCCTGGTCATAG  1166
      | |||||||| |||||
seq2  C-CCCCCTGGGCATAG  1137

seq1: chr8_63431166_63432308
seq2: B6Ng01-002E03.g_67_1191 (reverse)

seq1  AAGTAAAAAGCTTAATTATTTAGCATTCCACCTTGAAAAGTGGTGATTAA  50
      |||| |||||||  |    |||||||    ||||||||||||| || |||
seq2  AAGT-AAAAGCTATA----TTAGCAT---CCCTTGAAAAGTGG-GA-TAA  40

seq1  GCCTAATTACCCACAGAGCTAATCCCTACCTCCAGCTTTACTTACCAACA  100
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  GCCTAATTACCCACAGAGCTAATCCCTACCTCCAGCTTTAC-TACC-ACA  88

seq1  GCCTTTACAATTTTATACTTTGAATTTCACCTTTTTTCCCTTTACCAGCC  150
      ||||||||||||||||||||||||||||||| ||||| |||||||||| |
seq2  GCCTTTACAATTTTATACTTTGAATTTCACCGTTTTT-CCTTTACCAG-C  136

seq1  TGAAGATCTATTTCTAATTACTGCATTTTGTCTTCACAGGAAAGCTGATG  200
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TG-AGATCTATTTCTAATTACTGCATTTTGTC-TCACAGGAAAGCTGATG  184

seq1  CACTTTGCTTGATTTAAGCTATTTTCCTATATTCATATCACCAGTTCCTT  250
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CACTTTGC-TGATTTAAGCTATTTTCCTATA-TCATATCACCAGTTCCTT  232

seq1  TGTGCTGACCTATGGTTTCACAGGGTCATAAATTATGGAAAGCAAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGACCTATGGTTTCACAGGGTCATAAATTATGGAAAGCAAATGCT  282

seq1  TTCTCACACATAGACACTAGGACACTACCCTATGTTCTTAATGATATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACACATAGACACTAGGACACTACCCTATGTTCTTAATGATATGGG  332

seq1  ACAGTCAAGTAAGGCAAATACATAACTGAGCAAACGCAGTGCTTCCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAGTAAGGCAAATACATAACTGAGCAAACGCAGTGCTTCCTAAA  382

seq1  ACCACCACTTGTATTAACAGAGAAGGTCTCATCAGAATCAGGACCACGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACTTGTATTAACAGAGAAGGTCTCATCAGAATCAGGACCACGTC  432

seq1  TGAGCTTCTGACAGTGGTCAGGCCTTCAAGATGATTCCAGGGAACTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCTGACAGTGGTCAGGCCTTCAAGATGATTCCAGGGAACTATTT  482

seq1  AAGAAAATGTCCCAGAAATATTTTTTTCAATTTCTCTCTTGGTAATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTCCCAGAAATATTTTTTTCAATTTCTCTCTTGGTAATCTGT  532

seq1  ACGTGTCATTTGACATAAGTTATGACATTTCTTATTTCTTGTACATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCATTTGACATAAGTTATGACATTTCTTATTTCTTGTACATTTTT  582

seq1  ACACAGGCAGTCTATAAATTTGCACTGCCAAGACTATCAGATAGTGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCAGTCTATAAATTTGCACTGCCAAGACTATCAGATAGTGCTGC  632

seq1  CCAACCCTTCTAGTTAATCAGTACTAACAAACGGATGCTGTTTTCACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTTCTAGTTAATCAGTACTAACAAACGGATGCTGTTTTCACTCA  682

seq1  GAGAAAGTATGGTCTGCCTGCCTTTGCCATTTCCCATATTAGTAAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTATGGTCTGCCTGCCTTTGCCATTTCCCATATTAGTAAATAAT  732

seq1  GTGACATTTGAATAATCACTGTTCAATACGAATATTACCAGGAAACGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTGAATAATCACTGTTCAATACGAATATTACCAGGAAACGGAT  782

seq1  GACAGAAACACAGGGAAACTCTATCAGGAAAAGGAAAAAAATACCAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAACACAGGGAAACTCTATCAGGAAAAGGAAAAAAATACCAGGGA  832

seq1  GTAAAAATTTAGGAGAATTTATTCCTTATACTTTTAGATACACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATTTAGGAGAATTTATTCCTTATACTTTTAGATACACACACACA  882

seq1  CACACACACACGTATGTCAGAACATCATTAGGAGAAATTATTTTTTGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACGTATGTCAGAACATCATTAGGAGAAATTATTTTTTGTAC  932

seq1  TTTTTATACTTTTATAATGTTAGAAGAAATGTTCTAAAAGTACAAAGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATACTTTTATAATGTTAGAAGAAATGTTCTAAAAGTACAAAGAAT  982

seq1  AATTTCTTTTATTTATTTTTTTACTAAATCCTAATTTATACATGCACACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTTATTTATTTTTTTACTAAATCCTAATTTATACATGCACACA  1032

seq1  TATACAATTCATAAAGGAAAGCACAATATATGGGACATGATCTTAGTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTCATAAAGGAAAGCACAATATATGGGACATGATCTTAGTTTT  1082

seq1  TCCTCAAAATATAAAAAGAAACCTTTTACTAAGCACAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAATATAAAAAGAAACCTTTTACTAAGCACAGAATTC  1125