BAC Information

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BAC

Clone NameB6Ng01-003H08
Chromosome8 (Build37)
Map Location 63,999,283 - 64,121,541
singlet/doubletdoublet
Overlap genePalld
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneLOC100040872, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003H08.bB6Ng01-003H08.g
ACCDH841162DH841163
length202988
definitionDH841162|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H08, 5' end.DH841163|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,121,341 - 64,121,541)(63,999,283 - 64,000,284)
sequence
atcatcaacagttcactggcagtcgatggaaatcctgtagtgtgtattct
tttaagtgtagattcgggatctggatatgcagctagtgaggtaagcagtt
cggcccttttcctatgattgtgagccaagtaaatggctgagttactaatg
ggctgatttttttttttaactgtggtatgtgggggtaggaaggaggaaaa
gg
tcatgtgtgagcagcagacaaagtactggctcacttatcttaccaagccc
ccaaaaagcgaatgctaaatttatttatttatttgtgtaagggtcatgct
attgacctgcctgcatttcatgctattgaccactggttgtcttgcatttc
aggacagtttgtgacagagccatgctatgtttgtttgtgacaggctcatt
ttttggttgtcctggaactcattatataaaccaggctagcctcaacctca
gagatccacctgcttctaccttttgacttttcggatcaaaggcatgagcc
acaaccactcctccatatattaattcttgatgaaaaataaagtaaatgca
ttgatattcaacttgtgttttattctgtaagatgtactacattagtaatt
attttcttttctgtatgttcttagaagtccaaatttattttaaaaaagaa
agaataagcaaataaatttgattgcttcaaagtaaaattttaggattgag
ctaaagcccctgacccccttataggggtggatctgatgctaaggtcctgt
tccctaattggtttttgatctgtcagtaaagaggccaggggccaattgct
gggtggaaggaataggcaggacttctgggtccctggaggaagcaaagagg
tgcacggagagaagaggcaaggtcaccacccttctgagggagaaaaggtg
accagccatgcgagctcttggatgctcctacaggccggtgctcagggtgt
tcaacaggaactagatggaacagagcaactaaagttgagggcaggtggag
aggtgcggggatacggttgataagggcaccattttccaggtgggagatga
gtagcatccagcaattgtgtcaaaagcaagctgaaattgaacagctgtgt
gtgtgtctgtggttcaggaagctgggtggggctgtagcatgtcatagtag
taggtagcaaagctatacaaatacctcctactaatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_64121341_64121541
seq2: B6Ng01-003H08.b_52_253 (reverse)

seq1  CCTTTTCCTCCTTCCTACCCCCACATACCACAGTTAAAAAAAAAAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTCCTTCCTACCCCCACATACCACAGTTAAAAAAAAAAATCAG  50

seq1  CCCATTAGTAACTCAGCCATTTACTTGGCTCACAATCATAGGAAAAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGTAACTCAGCCATTTACTTGGCTCACAATCATAGGAAAAGGGC  100

seq1  CGAACTGCTTACCTCACTAGCTGCATATCCAGATCCCGAATCTACACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTGCTTACCTCACTAGCTGCATATCCAGATCCCGAATCTACACTTA  150

seq1  AAAGAATACACACTACAGGATTTCCATC-ACTGCCAGTGAACTGTTGATG  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAGAATACACACTACAGGATTTCCATCGACTGCCAGTGAACTGTTGATG  200

seq1  AT  201
      ||
seq2  AT  202

seq1: chr8_63999283_64000284
seq2: B6Ng01-003H08.g_81_1068

seq1  TCATGTGTGAGCAGCAGACAAAGTACTGGCTCACTTATCTTACCAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGAGCAGCAGACAAAGTACTGGCTCACTTATCTTACCAAGCCC  50

seq1  CCAAAAAGCGAATGCTAAATTTATTTATTTATTTGTGTAAGGGTCATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGCGAATGCTAAATTTATTTATTTATTTGTGTAAGGGTCATGCT  100

seq1  ATTGACCTGCCTGCATTTCATGCTATTGACCACTGGTTGTCTTGCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTGCCTGCATTTCATGCTATTGACCACTGGTTGTCTTGCATTTC  150

seq1  AGGACAGTTTGTGACAGAGCCATGCTATGTTTGTTTGTGACAGGCTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTTTGTGACAGAGCCATGCTATGTTTGTTTGTGACAGGCTCATT  200

seq1  TTTTGGTTGTCCTGGAACTCATTATATAAACCAGGCTAGCCTCAACCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTGTCCTGGAACTCATTATATAAACCAGGCTAGCCTCAACCTCA  250

seq1  GAGATCCACCTGCTTCTACCTTTTGACTTTTCGGATCAAAGGCATGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCACCTGCTTCTACCTTTTGACTTTTCGGATCAAAGGCATGAGCC  300

seq1  ACAACCACTCCTCCATATATTAATTCTTGATGAAAAATAAAGTAAATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACTCCTCCATATATTAATTCTTGATGAAAAATAAAGTAAATGCA  350

seq1  TTGATATTCAACTTGTGTTTTATTCTGTAAGATGTACTACATTAGTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTCAACTTGTGTTTTATTCTGTAAGATGTACTACATTAGTAATT  400

seq1  ATTTTCTTTTCTGTATGTTCTTAGAAGTCCAAATTTATTTTAAAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTCTGTATGTTCTTAGAAGTCCAAATTTATTTTAAAAAAGAA  450

seq1  AGAATAAGCAAATAAATTTGATTGCTTCAAAGTAAAATTTTAGGATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGCAAATAAATTTGATTGCTTCAAAGTAAAATTTTAGGATTGAG  500

seq1  CTAAAGCCCCTGACCCCCTTATAGGGGTGGATCTGATGCTAAGGTCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCCCCTGACCCCCTTATAGGGGTGGATCTGATGCTAAGGTCCTGT  550

seq1  TCCCTAATTGGTTTTTGATCTGTCAGTAAAGAGGCCAGGGGCCAATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATTGGTTTTTGATCTGTCAGTAAAGAGGCCAGGGGCCAATTGCT  600

seq1  GGGTGGAAGGAATAGGCAGGACTTCTGGGTCCCTGGAGGAAGCAAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAGGAATAGGCAGGACTTCTGGGTCCCTGGAGGAAGCAAAGAGG  650

seq1  TGCACGGAGAGAAGAGGCAAGGTCACCACCCTTCTGAGGGAGAAAAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGAGAGAAGAGGCAAGGTCACCACCCTTCTGAGGGAGAAAAGGTG  700

seq1  ACCAGCCATGCGAGCTCTTGGATGCTCCTACAGGCCGGTGCTCAGGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCATGCGAGCTCTTGGATGCTCCTACAGGCCGGTGCTCAGGGTGT  750

seq1  TCAACAGGAACTAGATGGAACAGAGCAACTAAAGTTGAGGGCAGGTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGAACTAGATGGAACAGAGCAACTAAAGTTGAGGGCAGGTGGAG  800

seq1  AGGTGCGGGGATACGGTTGATAAGGGCACCATTTTCCAGGTGGGAGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCGGGGATACGGTTGATAAGGGCACCATTTTCCAGGTGGGAGATGA  850

seq1  GTAGCATCCAGCAATTGTGTCAAAAGGCAAGCTGAAATTGAACAGCTGTG  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAGCATCCAGCAATTGTGTCAAAA-GCAAGCTGAAATTGAACAGCTGTG  899

seq1  TGTGTGTCTGTGGGTTCAAGGGAAGCTGGGTGGGGCTGGTAGCATGGTCC  950
      ||||||||||| ||||||  ||||||||||||||||| ||||||||   |
seq2  TGTGTGTCTGT-GGTTCA--GGAAGCTGGGTGGGGCT-GTAGCATG--TC  943

seq1  ATAGTAGGTAGGGTAGCAAAAGCTATACAAAATACCCCCTACTTAAAATG  1000
      |||||| ||| |||||| |||||||||| ||||||| ||||||   ||||
seq2  ATAGTA-GTA-GGTAGC-AAAGCTATAC-AAATACCTCCTACT---AATG  986

seq1  AG  1002
      ||
seq2  AG  988