BAC Information

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BAC

Clone NameB6Ng01-004G05
Chromosome8 (Build37)
Map Location 96,312,069 - 96,421,908
singlet/doubletdoublet
Overlap geneGnao1
Upstream geneMmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneAmfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004G05.bB6Ng01-004G05.g
ACCDH841812DH841813
length1,092936
definitionDH841812|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G05, 5' end.DH841813|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,420,807 - 96,421,908)(96,312,069 - 96,312,911)
sequence
gaattctttctctgacagtgctggaaatctagttctcagtcaggtccctc
tacctttgaaggctacccagccttgaccacagggaacagaaaggccatgc
tcaagactttcccaagaagacggcccgttttctccaagcctgattaacag
ccttttaccaatgcaaccctttccataaggctacacataggcactgcaca
cactggccatttgagggtaaattccaggtactccccttctcttagaatgg
ggagaggaagactataattccattcaagagactttctgatgacctactat
gctcagggttcagtaaacatgggctcagcacagaacttggcagggagcag
gtgttctgcagatgatggctgttttcatgctcacagttctctggccagga
ggatgaaggagacgctgcagtcctcagcagccactgcacaccacttaccc
acactgccccacaggtactttctgatcatcagccttctccgaacaaggtt
ccctttgtgcctagtcctgcacagagaacgctgactggaacaagcctcaa
gaggcggaggtacccttgctccccattctgccttccatgttccctcggtc
tgcctccccctggagaagaacctgtgatagatacattgccagcttcctgt
cctgcctctggggagcagcagatggatgggctcggccaggaccctgctgc
ccaccccaggctggcatagacactgtgccagccacccactaccccaggcc
ctggagttgccatcctgagctgaggtgactgccctgtggaatgaggattt
gtgcacaacattctaaattttacatgcaaagctatctgacacataatttg
tcagaccctgagaaggcacaatagctttcgtctgtgaggcaggaaatgtt
tatctgtcaagtcaccagagactaagttccctactcagagactgcaatgc
aagccagctgctccaagtcctcagctgtccaaggcctccagctgctctga
gctcagctgctcctgggtggggggtggggagcaagtcagcttaggagaga
tctcaagttgttttcccacctctcttcacacagtcctcattt
gaattccagcctcccggctgccttcatatcaagatgcagaactctcagtt
ctttctccagcaccatgtctgcctgtaggctgacatgcctctcaccttga
tgataatggactgaacctccgaaacagtaagccaccccccaattaaatgt
attcttttataagaattgtcttggtcatggtatctttcacagcaataaaa
ctctaagtcatgtagacatatttgggaccactattttagctattcccaca
acagtgactgttctatccccctccctctcttgggttaaatgctaatccat
attaatttgttcagaaaaagtctaggttgttttggtttgggttttttttt
tgcctattttaaaatcaagggtttttattagttgtacatactccatgtgt
catctagataaacttgatgttaacatcttgtcagactatcaaatattttc
tttattccatgggttcactcttgttagcgctctttgatgtccaatatttt
aaatatttcacaaagtcaagtctgcctgttttttcttttgttgcttatgg
ctttggtgctaaaatcagaaagttattgctaaactcaatatcatgaagaa
tttccctgtctcctgttaagaattgtatagctccagatcttatatttagg
ccttggatccattctgaatcattcttctattttatgacagataaggttca
aacttcattctttcatatggaaatatcacattccagccccatttgttaaa
gactgccctttctccctcaactattttaacatcaatattataagagttta
tgacactctctattctgttccattggtctgtctatatataagattgtttt
gattactgtagaattatatagtaagttttgaaatcagaactgttgatata
tcagctttgttattttccaaaaaacatttggattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96420807_96421908
seq2: B6Ng01-004G05.b_43_1134 (reverse)

seq1  AAATGAGGACTGTGTG-AGAGAGGTGTGAAAACAACCTGAGAATTCTCTC  49
      |||||||||||||||| ||||||||| ||||||||| |||||  ||||||
seq2  AAATGAGGACTGTGTGAAGAGAGGTGGGAAAACAACTTGAGA--TCTCTC  48

seq1  CAAAAGCTGGACTTTGCTCCCCA-CCCCCACCCAGGGAGCAGCTGGAGGC  98
      |  ||||| ||| |||||||||| |||||||||| ||||||||| |||  
seq2  C-TAAGCT-GAC-TTGCTCCCCACCCCCCACCCA-GGAGCAGCT-GAG--  91

seq1  CTCAGAGCAGCTGGAGGCCTTGGAACAGCTGGAGGACTTGGAGCAGCTGG  148
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CTCAGAGCAGCTGGAGGCCTTGG-ACAGCT-GAGGACTTGGAGCAGCTGG  139

seq1  CTTGCATTGCAGTCTCTGAGTAGGGAACTTAGTCTCTGGTGACTTGACAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTGCAGTCTCTGAGTAGGGAACTTAGTCTCTGGTGACTTGACAG  189

seq1  ATAAACATTTCCCTGCCTCACAGACGAAAGCTATTGTGCCTTCTCAGGGT  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTT-CCTGCCTCACAGACGAAAGCTATTGTGCCTTCTCAGGGT  238

seq1  CTGACAAATTATGTGTCAGATAGCTTTGCATGTAAAATTTAGAATGTTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAATTATGTGTCAGATAGCTTTGCATGTAAAATTTAGAATGTTGT  288

seq1  GCACAAATCCTCATTCCACAGGGCAGTCACCTCAGCTCAGGATGGCAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAATCCTCATTCCACAGGGCAGTCACCTCAGCTCAGGATGGCAACT  338

seq1  CCAGGGCCTGGGGTAGTGGGTGGCTGGCACAGTGTCTATGCCAGCCTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCTGGGGTAGTGGGTGGCTGGCACAGTGTCTATGCCAGCCTGGG  388

seq1  GTGGGCAGCAGGGTCCTGGCCGAGCCCATCCATCTGCTGCTCCCCAGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGCAGGGTCCTGGCCGAGCCCATCCATCTGCTGCTCCCCAGAGG  438

seq1  CAGGACAGGAAGCTGGCAATGTATCTATCACAGGTTCTTCTCCAGGGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGAAGCTGGCAATGTATCTATCACAGGTTCTTCTCCAGGGGGA  488

seq1  GGCAGACCGAGGGAACATGGAAGGCAGAATGGGGAGCAAGGGTACCTCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACCGAGGGAACATGGAAGGCAGAATGGGGAGCAAGGGTACCTCCG  538

seq1  CCTCTTGAGGCTTGTTCCAGTCAGCGTTCTCTGTGCAGGACTAGGCACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGGCTTGTTCCAGTCAGCGTTCTCTGTGCAGGACTAGGCACAA  588

seq1  AGGGAACCTTGTTCGGAGAAGGCTGATGATCAGAAAGTACCTGTGGGGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCTTGTTCGGAGAAGGCTGATGATCAGAAAGTACCTGTGGGGCA  638

seq1  GTGTGGGTAAGTGGTGTGCAGTGGCTGCTGAGGACTGCAGCGTCTCCTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTAAGTGGTGTGCAGTGGCTGCTGAGGACTGCAGCGTCTCCTTC  688

seq1  ATCCTCCTGGCCAGAGAACTGTGAGCATGAAAACAGCCATCATCTGCAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGGCCAGAGAACTGTGAGCATGAAAACAGCCATCATCTGCAGA  738

seq1  ACACCTGCTCCCTGCCAAGTTCTGTGCTGAGCCCATGTTTACTGAACCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCTCCCTGCCAAGTTCTGTGCTGAGCCCATGTTTACTGAACCCT  788

seq1  GAGCATAGTAGGTCATCAGAAAGTCTCTTGAATGGAATTATAGTCTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGTAGGTCATCAGAAAGTCTCTTGAATGGAATTATAGTCTTCCT  838

seq1  CTCCCCATTCTAAGAGAAGGGGAGTACCTGGAATTTACCCTCAAATGGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTCTAAGAGAAGGGGAGTACCTGGAATTTACCCTCAAATGGCC  888

seq1  AGTGTGTGCAGTGCCTATGTGTAGCCTTATGGAAAGGGTTGCATTGGTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGCAGTGCCTATGTGTAGCCTTATGGAAAGGGTTGCATTGGTAA  938

seq1  AAGGCTGTTAATCAGGCTTGGAGAAAACGGGCCGTCTTCTTGGGAAAGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTTAATCAGGCTTGGAGAAAACGGGCCGTCTTCTTGGGAAAGTC  988

seq1  TTGAGCATGGCCTTTCTGTTCCCTGTGGTCAAGGCTGGGTAGCCTTCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATGGCCTTTCTGTTCCCTGTGGTCAAGGCTGGGTAGCCTTCAAA  1038

seq1  GGTAGAGGGACCTGACTGAGAACTAGATTTCCAGCACTGTCAGAGAAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGGACCTGACTGAGAACTAGATTTCCAGCACTGTCAGAGAAAGA  1088

seq1  ATTC  1102
      ||||
seq2  ATTC  1092

seq1: chr8_96312069_96312911
seq2: B6Ng01-004G05.g_66_908

seq1  GAATTCCAGCCTCCCGGCTGCCTTCATATCAAGATGCAGAACTCTCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTCCCGGCTGCCTTCATATCAAGATGCAGAACTCTCAGTT  50

seq1  CTTTCTCCAGCACCATGTCTGCCTGTAGGCTGACATGCCTCTCACCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCAGCACCATGTCTGCCTGTAGGCTGACATGCCTCTCACCTTGA  100

seq1  TGATAATGGACTGAACCTCCGAAACAGTAAGCCACCCCCCAATTAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGGACTGAACCTCCGAAACAGTAAGCCACCCCCCAATTAAATGT  150

seq1  ATTCTTTTATAAGAATTGTCTTGGTCATGGTATCTTTCACAGCAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTATAAGAATTGTCTTGGTCATGGTATCTTTCACAGCAATAAAA  200

seq1  CTCTAAGTCATGTAGACATATTTGGGACCACTATTTTAGCTATTCCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTCATGTAGACATATTTGGGACCACTATTTTAGCTATTCCCACA  250

seq1  ACAGTGACTGTTCTATCCCCCTCCCTCTCTTGGGTTAAATGCTAATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTGTTCTATCCCCCTCCCTCTCTTGGGTTAAATGCTAATCCAT  300

seq1  ATTAATTTGTTCAGAAAAAGTCTAGGTTGTTTTGGTTTGGGTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTGTTCAGAAAAAGTCTAGGTTGTTTTGGTTTGGGTTTTTTTTT  350

seq1  TGCCTATTTTAAAATCAAGGGTTTTTATTAGTTGTACATACTCCATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTTTAAAATCAAGGGTTTTTATTAGTTGTACATACTCCATGTGT  400

seq1  CATCTAGATAAACTTGATGTTAACATCTTGTCAGACTATCAAATATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGATAAACTTGATGTTAACATCTTGTCAGACTATCAAATATTTTC  450

seq1  TTTATTCCATGGGTTCACTCTTGTTAGCGCTCTTTGATGTCCAATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCATGGGTTCACTCTTGTTAGCGCTCTTTGATGTCCAATATTTT  500

seq1  AAATATTTCACAAAGTCAAGTCTGCCTGTTTTTTCTTTTGTTGCTTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCACAAAGTCAAGTCTGCCTGTTTTTTCTTTTGTTGCTTATGG  550

seq1  CTTTGGTGCTAAAATCAGAAAGTTATTGCTAAACTCAATATCATGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGCTAAAATCAGAAAGTTATTGCTAAACTCAATATCATGAAGAA  600

seq1  TTTCCCTGTCTCCTGTTAAGAATTGTATAGCTCCAGATCTTATATTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTCTCCTGTTAAGAATTGTATAGCTCCAGATCTTATATTTAGG  650

seq1  CCTTGGATCCATTCTGAATCATTCTTCTATTTTATGACAGATAAGGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATCCATTCTGAATCATTCTTCTATTTTATGACAGATAAGGTTCA  700

seq1  AACTTCATTCTTTCATATGGAAATATCACATTCCAGCCCCATTTGTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATTCTTTCATATGGAAATATCACATTCCAGCCCCATTTGTTAAA  750

seq1  GACTGCCCTTTCTCCCTCAACTATTTTAACATCAATATTATAAGAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCTTTCTCCCTCAACTATTTTAACATCAATATTATAAGAGTTTA  800

seq1  TGACACTCTCTATTCTGTTCCATTGGTCTGTCTATATATAAGA  843
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCTCTATTCTGTTCCATTGGTCTGTCTATATATAAGA  843