BAC Information

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BAC

Clone NameB6Ng01-004J06
Chromosome8 (Build37)
Map Location 125,551,378 - 125,737,626
singlet/doubletdoublet
Overlap geneSpg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik
Upstream geneGm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11
Downstream geneCdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J06.bB6Ng01-004J06.g
ACCDH841946DH841947
length1,1611,032
definitionDH841946|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J06, 5' end.DH841947|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,736,445 - 125,737,626)(125,551,378 - 125,552,408)
sequence
cagcagtttctggtgtctgccaaatgctgggtgtgaaaagaaacactttt
gtcccactcacggtcctttctaccttgagacgccctcccatctttgtggc
caggctgagggacaccaagccctctccgctcaggagtcagtcacacagca
gcctggccaatcacccgaggagaattctgctccaagctgtaacatgttga
agggatcactgtgggaccagagagcaccctactaaccctctttggggaac
actttatggatcgctcaagtttcgtctcaatttcttttttccttctgaaa
cagggtctccagatatacaagatgcccttgaaatccctgttatagcctag
cctagagccaagggcagtgctctcgctcaccttccctgcaccgagaaccc
tgtaatatttacctcccgggtcatcatccttagaaagaggtcccatccct
gctgccttgccgcggccggtctcctctggatctccctaccttcagacgaa
gacgacggccttgagtgcttggatgtcgcgaacaacaggctttcggcagg
ctgcgactccttgtcagactgcttggcctccttctccattactttctcct
tagactttgtaactaaagtggtagtgctcttctcctcctctgaaacacac
ggacggacaagccgttagacctacagcccgcggacgcccgcacggagggc
gggcctcgccgccaggcggcgccctttacctttcttctctctgggtttgc
ttttcgactggcccataggtgaccccgccgctccagccgggcggcctcgg
ggccggttaacccgaccgactcacaaaacccacactaggctccgggagct
cattaccatggcaaccgcgtgccgcgcgagccgtgcctgagccccgccca
ggccccgcccaagccccgccccggagctatcttctcgcgacagccggccg
cgcgaccggaagcggtgcgacccggaagccctcgcggagacagcgggttc
gtacatcgcgtctcctgcgccgcctcgagggcttgtgctagccgacggca
tgaacggtaggggctgtcatcacttcgggtcgagcggagtctgcggacgt
ccgcccagtccatatcagccgaacccgtcatgcctaagcctgaatctatc
cccgggcctgg
gaattccagggcagccaaggcttcaacagagaaatcctgtcttgaaaaac
caattaacaaacaagcaagaataaaatatactcagaaaccggaattagta
tcaggatagtcatgttagtgcatgcctatggctcacaagttcacggtctc
tctgggcattttaggttaagactctaattcaaaataaaaggctgagccgg
gcgtgatggcgcacgcctttgatctcagcgcttgggaggcagaggcaggc
ggatttctgagtttgaggccagcctggtctacagagtgagttccaggaca
gccagggatacacagagaaaccctgtctcaaaacaaaaacaaacaaacaa
acaaaaataaaaggctggggatacatggctcaatactaaagcaaaaaacc
ccaaaagtactagaaaggaagaggaagaaggaattaacacgagcatcaac
tattcatagtgagagacgtctactctgagtcacatgctaggcttgagtca
caatgtgaatgcggaatctgatcctcatcaatgcgtttctgtatttctct
tttgttaatcactggaagggggagagggcggcagagataaggtgcacatc
ttgctatcagaggacaaatctgaagcagccagttctctccttccaccctg
tggagtcgaggattaaactcaggtcatcaaggttgcccgaaaagcccccg
acccactgagccatctagttcatgctgtgtgattgtctatcacctccaca
tcctattaagtgacagctacatccacaggagtacatgccacaggtcactg
gtagccaccaatgacaaatatccacacagcaagtctacagaagtgagaaa
gaatatgagttccaggtctagctctccaacaactcactacaacaccttcc
gcacataggttttatttactgggttttggggggtgggtatagagcattaa
ggaggtgtcttactataaggctggccccaaaactcctggcatccctggga
atgccagcatagaccactatatccagttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125736445_125737626
seq2: B6Ng01-004J06.b_54_1214 (reverse)

seq1  CCAGGCCCGGGGGGATAGAGTCTGGGGCTGAAGCCCGGGGCGGGTCCGGC  50
      ||||||||  ||||||||| ||   |||| | |  |  | ||||| ||||
seq2  CCAGGCCC--GGGGATAGATTC--AGGCTTAGG--CATGACGGGTTCGGC  44

seq1  TGGGTTATGGGGCTGAGGCGAGACGTCCGCAGACTCCCGCTCCGACCCCG  100
      |  | ||| || ||| |||| |||||||||||||| ||||| ||| ||||
seq2  T--GATAT-GGACTG-GGCG-GACGTCCGCAGACT-CCGCT-CGA-CCCG  86

seq1  AAGTGGATGACAGCCCCTTACCGTCCATGGCCGGTCGGGCTAGCAC-AGC  149
      |||| |||||||||||| |||||| ||||  | ||| ||||||||| |||
seq2  AAGT-GATGACAGCCCC-TACCGTTCATG--CCGTC-GGCTAGCACAAGC  131

seq1  CCTCGGGGCGGCGCAGGGGACGCGATGTTACGGACCCGCTGTCTCCGCGA  199
      ||||| ||||||||||| ||||||||| |||| |||||||||||||||||
seq2  CCTCGAGGCGGCGCAGGAGACGCGATG-TACGAACCCGCTGTCTCCGCGA  180

seq1  GGGCTTCCGGGGTCGCCACCGCTTCCGGTCGCGCGGCCGGCTGTCGCGAG  249
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  GGGCTTCC-GGGTCG-CACCGCTTCCGGTCGCGCGGCCGGCTGTCGCGAG  228

seq1  AAGATAGCTCCGGGGCGGGGCTTGGGCGGGGCCTGGGCGGGGCTCAGGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCTCCGGGGCGGGGCTTGGGCGGGGCCTGGGCGGGGCTCAGGCA  278

seq1  CGGCTCGCGCGGCACGCGGTTGCCATGGTAATGAGCTCCCGGAGCCTAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCGCGCGGCACGCGGTTGCCATGGTAATGAGCTCCCGGAGCCTAGT  328

seq1  GTGGGTTTTGTGAGTCGGTCGGGTTAACCGGCCCCGAGGCCGCCCGGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTTGTGAGTCGGTCGGGTTAACCGGCCCCGAGGCCGCCCGGCTG  378

seq1  GAGCGGCGGGGTCACCTATGGGCCAGTCGAAAAGCAAACCCAGAGAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGCGGGGTCACCTATGGGCCAGTCGAAAAGCAAACCCAGAGAGAAG  428

seq1  AAAGGTAAAGGGCGCCGCCTGGCGGCGAGGCCCGCCCTCCGTGCGGGCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAAGGGCGCCGCCTGGCGGCGAGGCCCGCCCTCCGTGCGGGCGT  478

seq1  CCGCGGGCTGTAGGTCTAACGGCTTGTCCGTCCGTGTGTTTCAGAGGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGGCTGTAGGTCTAACGGCTTGTCCGTCCGTGTGTTTCAGAGGAGG  528

seq1  AGAAGAGCACTACCACTTTAGTTACAAAGTCTAAGGAGAAAGTAATGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCACTACCACTTTAGTTACAAAGTCTAAGGAGAAAGTAATGGAG  578

seq1  AAGGAGGCCAAGCAGTCTGACAAGGAGTCGCAGCCTGCCGAAAGCCTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCCAAGCAGTCTGACAAGGAGTCGCAGCCTGCCGAAAGCCTGTT  628

seq1  GTTCGCGACATCCAAGCACTCAAGGCCGTCGTCTTCGTCTGAAGGTAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCGACATCCAAGCACTCAAGGCCGTCGTCTTCGTCTGAAGGTAGGG  678

seq1  AGATCCAGAGGAGACCGGCCGCGGCAAGGCAGCAGGGATGGGACCTCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGAGGAGACCGGCCGCGGCAAGGCAGCAGGGATGGGACCTCTTT  728

seq1  CTAAGGATGATGACCCGGGAGGTAAATATTACAGGGTTCTCGGTGCAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGATGATGACCCGGGAGGTAAATATTACAGGGTTCTCGGTGCAGGG  778

seq1  AAGGTGAGCGAGAGCACTGCCCTTGGCTCTAGGCTAGGCTATAACAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGCGAGAGCACTGCCCTTGGCTCTAGGCTAGGCTATAACAGGGA  828

seq1  TTTCAAGGGCATCTTGTATATCTGGAGACCCTGTTTCAGAAGGAAAAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGGCATCTTGTATATCTGGAGACCCTGTTTCAGAAGGAAAAAAG  878

seq1  AAATTGAGACGAAACTTGAGCGATCCATAAAGTGTTCCCCAAAGAGGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGACGAAACTTGAGCGATCCATAAAGTGTTCCCCAAAGAGGGTT  928

seq1  AGTAGGGTGCTCTCTGGTCCCACAGTGATCCCTTCAACATGTTACAGCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGTGCTCTCTGGTCCCACAGTGATCCCTTCAACATGTTACAGCTT  978

seq1  GGAGCAGAATTCTCCTCGGGTGATTGGCCAGGCTGCTGTGTGACTGACTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAATTCTCCTCGGGTGATTGGCCAGGCTGCTGTGTGACTGACTC  1028

seq1  CTGAGCGGAGAGGGCTTGGTGTCCCTCAGCCTGGCCACAAAGATGGGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCGGAGAGGGCTTGGTGTCCCTCAGCCTGGCCACAAAGATGGGAGG  1078

seq1  GCGTCTCAAGGTAGAAAGGACCGTGAGTGGGACAAAAGTGTTTCTTTTCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTCAAGGTAGAAAGGACCGTGAGTGGGACAAAAGTGTTTCTTTTCA  1128

seq1  CACCCAGCATTTGGCAGACACCAGAAACTGCTG  1182
      |||||||||||||||||||||||||||||||||
seq2  CACCCAGCATTTGGCAGACACCAGAAACTGCTG  1161

seq1: chr8_125551378_125552408
seq2: B6Ng01-004J06.g_68_1099

seq1  GAATTCCAGGGCAGCCAAGGCTTCAACAGAGAAATCCTGTCTTGAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCAGCCAAGGCTTCAACAGAGAAATCCTGTCTTGAAAAAC  50

seq1  CAATTAACAAACAAGCAAGAATAAAATATACTCAGAAACCGGAATTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACAAACAAGCAAGAATAAAATATACTCAGAAACCGGAATTAGTA  100

seq1  TCAGGATAGTCATGTTAGTGCATGCCTATGGCTCACAAGTTCACGGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGTCATGTTAGTGCATGCCTATGGCTCACAAGTTCACGGTCTC  150

seq1  TCTGGGCATTTTAGGTTAAGACTCTAATTCAAAATAAAAGGCTGAGCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCATTTTAGGTTAAGACTCTAATTCAAAATAAAAGGCTGAGCCGG  200

seq1  GCGTGATGGCGCACGCCTTTGATCTCAGCGCTTGGGAGGCAGAGGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGATGGCGCACGCCTTTGATCTCAGCGCTTGGGAGGCAGAGGCAGGC  250

seq1  GGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  300

seq1  GCCAGGGATACACAGAGAAACCCTGTCTCAAAACAAAAACAAACAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGATACACAGAGAAACCCTGTCTCAAAACAAAAACAAACAAACAA  350

seq1  ACAAAAATAAAAGGCTGGGGATACATGGCTCAATACTAAAGCAAAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAAAAGGCTGGGGATACATGGCTCAATACTAAAGCAAAAAACC  400

seq1  CCAAAAGTACTAGAAAGGAAGAGGAAGAAGGAATTAACACGAGCATCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTACTAGAAAGGAAGAGGAAGAAGGAATTAACACGAGCATCAAC  450

seq1  TATTCATAGTGAGAGACGTCTACTCTGAGTCACATGCTAGGCTTGAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAGTGAGAGACGTCTACTCTGAGTCACATGCTAGGCTTGAGTCA  500

seq1  CAATGTGAATGCGGAATCTGATCCTCATCAATGCGTTTCTGTATTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAATGCGGAATCTGATCCTCATCAATGCGTTTCTGTATTTCTCT  550

seq1  TTTGTTAATCACTGGAAGGGGGAGAGGGCGGCAGAGATAAGGTGCACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAATCACTGGAAGGGGGAGAGGGCGGCAGAGATAAGGTGCACATC  600

seq1  TTGCTATCAGAGGACAAATCTGAAGCAGCCAGTTCTCTCCTTCCACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCAGAGGACAAATCTGAAGCAGCCAGTTCTCTCCTTCCACCCTG  650

seq1  TGGAGTCGAGGATTAAACTCAGGTCATCAAGGTTGCCCGAAAAGCCCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCGAGGATTAAACTCAGGTCATCAAGGTTGCCCGAAAAGCCCCCG  700

seq1  ACCCACTGAGCCATCTAGTTCATGCTGTGTGATTGTCTATCACCTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGAGCCATCTAGTTCATGCTGTGTGATTGTCTATCACCTCCACA  750

seq1  TCCTATTAAGTGACAGCTACATCCACAGGAGTACATGCCACAGGTCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTAAGTGACAGCTACATCCACAGGAGTACATGCCACAGGTCACTG  800

seq1  GTAGCCACCAATGACAAATATCCACACAGCAAGTCTACAGAAGTGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCACCAATGACAAATATCCACACAGCAAGTCTACAGAAGTGAGAAA  850

seq1  GAATATGAGTTCCAGGTCTAGCTCTCCAACAACTCACTACAACACC-TCC  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATATGAGTTCCAGGTCTAGCTCTCCAACAACTCACTACAACACCTTCC  900

seq1  GCACATAGGTTTTATTTACTGGGTTTT-GGGGGTGGGTATAGAGCATTTA  948
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  GCACATAGGTTTTATTTACTGGGTTTTGGGGGGTGGGTATAGAGCA-TTA  949

seq1  AGGAGTTGTCTTACTATAAGGCTGGCCCC-AAACTCCTGGCATCCCTGGG  997
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGAGGTGTCTTACTATAAGGCTGGCCCCAAAACTCCTGGCATCCCTGGG  999

seq1  ATTGCCAGCATAGACCACTATATCCAGTTTGGAT  1031
      | ||||||||||||||||||||||||| ||||||
seq2  AATGCCAGCATAGACCACTATATCCAG-TTGGAT  1032