BAC Information

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BAC

Clone NameB6Ng01-005E19
Chromosome8 (Build37)
Map Location 111,027,543 - 111,162,352
singlet/doubletdoublet
Overlap genenone
Upstream geneWwp2, Psmd7, LOC100041744, LOC668038
Downstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E19.bB6Ng01-005E19.g
ACCDH842472DH842473
length9951,103
definitionDH842472|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E19, 5' end.DH842473|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,161,355 - 111,162,352)(111,027,543 - 111,028,639)
sequence
gaattccctagcctacggcttccaactcttccatgttctcctcacaaacc
agttcaaaggcctggaaaccacaaggtcaggtttattacagcaatgccct
tattcttgggtcatacttttctctactctttttttttttttttttttaga
caaagattctctgtagccctggctgtcctggaacctacctgtagatcatc
ctgaccccacagagaggttctacagacttccaaagcagtagctgggtatc
aagtgttcccacacattagcctacagcagggatgtttcccattcaaacca
ccacattacttaacttacgttctatttggtaatgtactgggtacctcctt
accctttccccatacatacttgatgtggcaactgtggaccctaaatgact
gcagaggaaatcctgtgtggcattagaagcatcttatgttgctctatatt
ttctctgagcctttatgaggtcatttaacagttttgctgagcaacagctc
tcacaattgtgttaataaggaggccatccttgctctctgttttacacgct
gaagaaatgcatttattccacttacaggtatgtattgatgtgtgagcatg
tgtttgtgtgttggggtgtgcatgcgtgcacagacatgtctatacacatt
gcctgtctctatacacaggctcccttcaccccttattcttgtatatacta
gagaagtttgctcagattatttttgaatttctgtatttcacttaacaatg
gttgatagacttcatccctttaggtagttggcttcatattttatgtatga
cggtgattctaccccctgaggatgggggccgggatgccagaactggatgc
tggggcactgccgtgtttgtttctcaggatcaaacacgcatggttcaatc
acattaaaagccacgggcttttcttatcccactcagcctgtaaacgtcta
tctccaggctttcccggaaattgtgccatggacagggattagctg
gaattcaggacagaacaaaatattggggaatgaaaaagaaagtcctgcct
agagatgcaggcttattggctatggggatgttgggggcagatgtggctcc
tgaagaagacatagagccctgatggctagtcctatggtatcatcaagcat
cctgctggggagagagcccctggctgttataatgtcttgcttctgccctg
tggatcaagtgcggcgcaggagatcatcagaccttgaaatgaaagagaaa
ccaaaaaaccttagattttcacatcaaccttcagaccaggattctgcact
atgtatagaaatctaacacaaaagaaaacagcagatgctggccaccactg
gaacatcggggcaggagtgcacagcgatcatgtgactattctgaatcaac
gtgaagttgtgagttaaagatgctcaccagttatcaaggatgtaaatatt
aaagacaagcaaggatcgtactgtaggttttttgtcttagagaattattt
ttatttgttttgaaacagaatcttccttcgtagtcccggcaggccttgaa
ttctcagtccttcgacttcagccttgttctctagctttgctgacttacac
taccatttcctggctaagcatgaatattctagaaactgaattcaaactac
tatctggaaatagtttgtcagtaaagtaaaaagaagacagtttgattatc
tgtgactacccaaagataatttgttagaaattttaaagatgaaaaaaaat
aaaaaacttgtatcaaatgagctctacacttgatacattctatagacaca
cactcatacgtacatacatacatacttacatactacatatagttcatcta
gattatatatggttattgcatatgttctgattagagtttcttggaaagaa
atatgaagagtgttaaaccatggcttgatataaaggaaaatgaaatagaa
taattccatggccagacatcttaccctcaatactacccccccccaaaatt
gtaagtgagagaagaagagttgaggggggcctgcctcatgggctagagtg
cttgcctcagaggcctgaagatttgagtttcctaatccccagcacccatg
tac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111161355_111162352
seq2: B6Ng01-005E19.b_48_1042 (reverse)

seq1  CAGCTAAT-CCTGTCCATAGGACACATTTCCGGGAAAGCCTGGAGATAGA  49
      |||||||| ||||||||| | ||| |||||||||||||||||||||||||
seq2  CAGCTAATCCCTGTCCATGGCACA-ATTTCCGGGAAAGCCTGGAGATAGA  49

seq1  TGTTTACAGGCTGAGCTGGGATAAGAAAAGCCAGTGGCTTTTAATGTGAT  99
       |||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  CGTTTACAGGCTGAG-TGGGATAAGAAAAGCCCGTGGCTTTTAATGTGAT  98

seq1  TGAAGCACTGCGTGTCTGAGTCCTGAGAAACAAACACGGCAGTGCCCCAG  149
      |||| || ||||||| ||| ||||||||||||||||||||||||||||||
seq2  TGAACCA-TGCGTGTTTGA-TCCTGAGAAACAAACACGGCAGTGCCCCAG  146

seq1  CATCCATGTTCTGGCATCCCGGCCCCCATCCTCAGGGGGTAGAATCACCG  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCA-GTTCTGGCATCCCGGCCCCCATCCTCAGGGGGTAGAATCACCG  195

seq1  TCATACATAAAATATGAAGCCAACTACCTAAAGGGATGAAGTCTATCAA-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCATACATAAAATATGAAGCCAACTACCTAAAGGGATGAAGTCTATCAAC  245

seq1  CATTGTTAAGTGAAATACAGAAATTCAAAAATAATCTGAGCAAACTTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTAAGTGAAATACAGAAATTCAAAAATAATCTGAGCAAACTTCTC  295

seq1  TAGTATATACAAGAATAAGGGGTGAAGGGAGCCTGTGTATAGAGACAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATACAAGAATAAGGGGTGAAGGGAGCCTGTGTATAGAGACAGGC  345

seq1  AATGTGTATAGACATGTCTGTGCACGCATGCACACCCCAACACACAAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTATAGACATGTCTGTGCACGCATGCACACCCCAACACACAAACA  395

seq1  CATGCTCACACATCAATACATACCTGTAAGTGGAATAAATGCATTTCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCACACATCAATACATACCTGTAAGTGGAATAAATGCATTTCTTC  445

seq1  AGCGTGTAAAACAGAGAGCAAGGATGGCCTCCTTATTAACACAATTGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGTAAAACAGAGAGCAAGGATGGCCTCCTTATTAACACAATTGTGA  495

seq1  GAGCTGTTGCTCAGCAAAACTGTTAAATGACCTCATAAAGGCTCAGAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTTGCTCAGCAAAACTGTTAAATGACCTCATAAAGGCTCAGAGAA  545

seq1  AATATAGAGCAACATAAGATGCTTCTAATGCCACACAGGATTTCCTCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGCAACATAAGATGCTTCTAATGCCACACAGGATTTCCTCTGC  595

seq1  AGTCATCTAGGGTCCACAGTTGCCACATCAAGTATGTATGGGGAAAGGGT  648
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTAGGGTCCACAGTTGCCACATCAAGTATGTATGGGGAAAGGGT  645

seq1  AAGGAGGTACCCAGTACATTACCAAATAGAACGTAAGTTAAGTAATGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTACCCAGTACATTACCAAATAGAACGTAAGTTAAGTAATGTGG  695

seq1  TGGTTTGAATGGGAAACATCCCTGCTGTAGGCTAATGTGTGGGAACACTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAATGGGAAACATCCCTGCTGTAGGCTAATGTGTGGGAACACTT  745

seq1  GATACCCAGCTACTGCTTTGGAAGTCTGTAGAACCTCTCTGTGGGGTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAGCTACTGCTTTGGAAGTCTGTAGAACCTCTCTGTGGGGTCAG  795

seq1  GATGATCTACAGGTAGGTTCCAGGACAGCCAGGGCTACAGAGAATCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTACAGGTAGGTTCCAGGACAGCCAGGGCTACAGAGAATCTTTG  845

seq1  TCTAAAAAAAAAAAAAAAAAAAGAGTAGAGAAAAGTATGACCCAAGAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAAAAAAAAAAAAAAAGAGTAGAGAAAAGTATGACCCAAGAATA  895

seq1  AGGGCATTGCTGTAATAAACCTGACCTTGTGGTTTCCAGGCCTTTGAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTGCTGTAATAAACCTGACCTTGTGGTTTCCAGGCCTTTGAACT  945

seq1  GGTTTGTGAGGAGAACATGGAAGAGTTGGAAGCCGTAGGCTAGGGAATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGAGGAGAACATGGAAGAGTTGGAAGCCGTAGGCTAGGGAATTC  995

seq1: chr8_111027543_111028639
seq2: B6Ng01-005E19.g_68_1170

seq1  GAATTCAGGACAGAACAAAATATTGGGGAATGAAAAAGAAAGTCCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACAGAACAAAATATTGGGGAATGAAAAAGAAAGTCCTGCCT  50

seq1  AGAGATGCAGGCTTATTGGCTATGGGGATGTTGGGGGCAGATGTGGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCAGGCTTATTGGCTATGGGGATGTTGGGGGCAGATGTGGCTCC  100

seq1  TGAAGAAGACATAGAGCCCTGATGGCTAGTCCTATGGTATCATCAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGACATAGAGCCCTGATGGCTAGTCCTATGGTATCATCAAGCAT  150

seq1  CCTGCTGGGGAGAGAGCCCCTGGCTGTTATAATGTCTTGCTTCTGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGGGAGAGAGCCCCTGGCTGTTATAATGTCTTGCTTCTGCCCTG  200

seq1  TGGATCAAGTGCGGCGCAGGAGATCATCAGACCTTGAAATGAAAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAGTGCGGCGCAGGAGATCATCAGACCTTGAAATGAAAGAGAAA  250

seq1  CCAAAAAACCTTAGATTTTCACATCAACCTTCAGACCAGGATTCTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAACCTTAGATTTTCACATCAACCTTCAGACCAGGATTCTGCACT  300

seq1  ATGTATAGAAATCTAACACAAAAGAAAACAGCAGATGCTGGCCACCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGAAATCTAACACAAAAGAAAACAGCAGATGCTGGCCACCACTG  350

seq1  GAACATCGGGGCAGGAGTGCACAGCGATCATGTGACTATTCTGAATCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCGGGGCAGGAGTGCACAGCGATCATGTGACTATTCTGAATCAAC  400

seq1  GTGAAGTTGTGAGTTAAAGATGCTCACCAGTTATCAAGGATGTAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTGTGAGTTAAAGATGCTCACCAGTTATCAAGGATGTAAATATT  450

seq1  AAAGACAAGCAAGGATCGTACTGTAGGTTTTTTGTCTTAGAGAATTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGCAAGGATCGTACTGTAGGTTTTTTGTCTTAGAGAATTATTT  500

seq1  TTATTTGTTTTGAAACAGAATCTTCCTTCGTAGTCCCGGCAGGCCTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTTGAAACAGAATCTTCCTTCGTAGTCCCGGCAGGCCTTGAA  550

seq1  TTCTCAGTCCTTCGACTTCAGCCTTGTTCTCTAGCTTTGCTGACTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCCTTCGACTTCAGCCTTGTTCTCTAGCTTTGCTGACTTACAC  600

seq1  TACCA-TTCCTGGCTAAGCATGAATATTCTAGAAACTGAATTCAAACTAC  649
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTCCTGGCTAAGCATGAATATTCTAGAAACTGAATTCAAACTAC  650

seq1  TATCTGGAAATAGTTTGTCAGTAAAGTAAAAAGAAGACAG-TTGATTATC  698
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATCTGGAAATAGTTTGTCAGTAAAGTAAAAAGAAGACAGTTTGATTATC  700

seq1  TGTGACTACCCAAAGATAA-TTGTTAGAAATTTTAAAGATGAAAAAAA--  745
      ||||||||||||||||||| ||||||||||||||||||||||||||||  
seq2  TGTGACTACCCAAAGATAATTTGTTAGAAATTTTAAAGATGAAAAAAAAT  750

seq1  TAAAAACTTGTATCAAATGAGCTCTACACTTGATACATTCAATAGACACA  795
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAAAACTTGTATCAAATGAGCTCTACACTTGATACATTCTATAGACACA  800

seq1  CACACATACATACATACATACATACATACATACATACATATAGTTCATCT  845
      ||| ||||| ||||||||||||||| ||||||| ||||||||||||||||
seq2  CACTCATACGTACATACATACATACTTACATAC-TACATATAGTTCATCT  849

seq1  AGATTATATATGGTAATGGCATATG-TCTGATAAGAGTTTCAGGGAAAGA  894
      |||||||||||||| || ||||||| |||||| ||||||||  |||||||
seq2  AGATTATATATGGTTATTGCATATGTTCTGATTAGAGTTTCTTGGAAAGA  899

seq1  AATATGAAGAGTGTTAAAACAT-GCTAGATATAAA-GAAAATGAAATAAG  942
      |||||||||||||||||| ||| ||| |||||||| ||||||||||| ||
seq2  AATATGAAGAGTGTTAAACCATGGCTTGATATAAAGGAAAATGAAAT-AG  948

seq1  AATAATTCCATGG-CAGACA-CATAACAACAAAACTACCCCCCCCCAAAA  990
      ||||||||||||| |||||| | || |  ||| |||||||||||||||||
seq2  AATAATTCCATGGCCAGACATCTTACCCTCAATACTACCCCCCCCCAAAA  998

seq1  TGTGAAGTGAAGAGAAAGAAGAAGAAGAGTGGGGTCTGGCTCAGTGGGTT  1040
      |   ||||| |||| |||||| ||  ||| |||| ||| |||| |||| |
seq2  TTGTAAGTG-AGAG-AAGAAG-AGTTGAGGGGGGCCTGCCTCA-TGGGCT  1044

seq1  AGAGTGCTTGCTACAGAGGCATGAAGATTTGAGTT--CTAATCCACAGCA  1088
      |||||||||||  ||||||| ||||||||||||||  ||||||| |||||
seq2  AGAGTGCTTGCCTCAGAGGCCTGAAGATTTGAGTTTCCTAATCCCCAGCA  1094

seq1  CCCAGGTAC  1097
      |||| ||||
seq2  CCCATGTAC  1103