BAC Information

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BAC

Clone NameB6Ng01-005H04
Chromosome8 (Build37)
Map Location 101,056,124 - 101,155,352
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005H04.bB6Ng01-005H04.g
ACCDH842581DH842582
length1,1541,055
definitionDH842581|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H04, 5' end.DH842582|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,154,187 - 101,155,352)(101,056,124 - 101,057,190)
sequence
gaattcatgaggatggagtaatcactatgaataaaccaactatacgtttt
ctctctctcactgaatacctgagataaagctcttccccaatttaattttg
ctaaaccatgacagtaacttgagcatctagaacttggaagtcatgtctat
gttatatacactaagtatcttgtgttattaaagcccaaattaggaaatct
tttatccatttatccttcaaaaaaaaataattgtgtgtgtgtgtgtccta
agttaaatcactctgaaaatagatgcttctatcacccatgtttgatcttt
gaacaggaggaaccagctccccaggagtaatatactaaatcaaaaggtga
cctgataattgtgactgtttcacagacaaagagagagagagcgagagcga
gagcgagagagagagagagagagagagagagaagataggaattaggaatt
aaatataatagggtgttttcttaaggaacaaccatactggacctcaaaat
caatttcattattcttcctattcctgtgaggagaattccaaccaactcat
ttcaaatcagcatgcatccttatagtaccgattttgggaaagtactgttg
acaggagagctggccacactttttaaaaggaatgtgaagaagagattgct
acagaaggagatattatgaacatacaaataagagcaaaggggagcatata
aaacacaagataaagctaaggtggagagatcaaaagctaaatctggggtt
gaatttctggaacgactctttttcgagtttatctgccttctcacatgttt
ctctgacaccagcatcttctgggtgtattctagctacttgttaactgatg
ataatgtatttgaacactccacagtcactcatcagtggattaatatgaca
gaattcttgtgatttatgaaaatacaaatattgtaaaaaactagagcatt
tgctccaatgagacatatcatcattgggatgacagcacatataatccttc
acaactcgggaacaggctcagcttgtgaataaaccttgagtccacaggca
aactggatgaaggacaacagctaatgaaactgaatcctgtgtgattgtgt
gggggtatgcacatactagtgagtacctggtgtgcgtcaggggtacgaga
caga
gaattcctatttcaagattctgtttggaactcaaactgtgatgctttttt
gcttatttttacctattacacaaagggagtctgagattaatcagcctgcc
tgtggtacatattgtgtactattctaatatctatgaacaatattttactt
ctgacatactaaaactaaatacttccataaaatggtttattattataaaa
cctaatatcagtaagagagacctttcatctcccacaggtacattctatta
gggaaatatatcattcaaaatgtatattttagtagacaaattttgattct
aattaagtttacttggttagaccatgagcttaggaatccatgtttattgt
ttactaaattcacagtgtagatgggaatattatacatattcactataatt
tactacatatacacacactcacatacaaccacacacacatttatatatat
acacacacatacacatatatatgtatatatatatgtatatatgtatatat
attccttcaagaacatagtcttgcagaaaagaataaaagccaatcatatt
tcaaaaccttcaatcaccagggaaacattaagaattgtccaatctcaaag
gtgtacttagctatgagtgaggattaaggcatgtgagtaagacctttaga
cacgtatctccattctatgtttctctgcacaagtaatgaatcatttatat
ctcaggtgacttttattttccaccaaaagccttacattaaaaagcaaata
aataaaccaaaaataatcaacagtaggtggatatgttttacaggtgagag
agatgactttcatctattaaagattatagattcatattaatgagattcaa
attaaaaatcaacaatatgaaagctatttttcctctaatggccttttttt
ttttttactatatgacatgagaaagtttgattaaacctaatgtgatttta
tgtaccttatcatatcctcatcattggatagtagagaaagatcagatgag
aaaagagaatagcacatgagtgatatacaaacccaggtgtctctcctagc
actgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101154187_101155352
seq2: B6Ng01-005H04.b_45_1198 (reverse)

seq1  TCTGTCTCTGTCCCCTGACGCACA-CACGTACACACATGTATGTGCATAC  49
      ||||||||   ||||||||||||| || |||| |||  ||||||||||||
seq2  TCTGTCTCGTACCCCTGACGCACACCAGGTACTCACTAGTATGTGCATAC  50

seq1  CCCCACACAAATACACACAAGATCCAGTTTTCATTAGCTGTTGTCCCTCA  99
      ||||||||||   |||||| ||| ||| |||||||||||||||||| |||
seq2  CCCCACACAA--TCACACAGGATTCAG-TTTCATTAGCTGTTGTCCTTCA  97

seq1  TCCAGTTTGCCTGTGGACTCCAAGGTTTTATTCCACAGCCTGAGCCCTTG  149
      ||||||||||||||||||| ||||| |||||| ||||  |||||||  ||
seq2  TCCAGTTTGCCTGTGGACT-CAAGG-TTTATT-CACAAGCTGAGCC--TG  142

seq1  TTCCCGAGTTGGTGAAGGTTTATATGTTGCTGTTCATTCCAATGATGATA  199
      |||||||||| ||||||| ||||||| ||||| |||| ||||||||||||
seq2  TTCCCGAGTT-GTGAAGGATTATATG-TGCTG-TCATCCCAATGATGATA  189

seq1  TGTCTCATTGGAGCAAATGCTCTAGTTTTTTACAAATATTTTGTATTTTC  249
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  TGTCTCATTGGAGCAAATGCTCTAGTTTTTTAC-AATA-TTTGTATTTTC  237

seq1  ATAAATCACAAGAATTCTGTCATATTAATCCACTGATGAGTGACTGTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCACAAGAATTCTGTCATATTAATCCACTGATGAGTGACTGTGGA  287

seq1  GTGTTCAAATACATTATCATCAGTTAACAAGTAGCTAGAATACACCCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAATACATTATCATCAGTTAACAAGTAGCTAGAATACACCCAGA  337

seq1  AGATGCTGGTGTCAGAGAAACATGTGAGAAGGCAGATAAACTCGAAAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTGTCAGAGAAACATGTGAGAAGGCAGATAAACTCGAAAAAG  387

seq1  AGTCGTTCCAGAAATTCAACCCCAGATTTAGCTTTTGATCTCTCCACCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTTCCAGAAATTCAACCCCAGATTTAGCTTTTGATCTCTCCACCTT  437

seq1  AGCTTTATCTTGTGTTTTATATGCTCCCCTTTGCTCTTATTTGTATGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATCTTGTGTTTTATATGCTCCCCTTTGCTCTTATTTGTATGTTC  487

seq1  ATAATATCTCCTTCTGTAGCAATCTCTTCTTCACATTCCTTTTAAAAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCTCCTTCTGTAGCAATCTCTTCTTCACATTCCTTTTAAAAAGT  537

seq1  GTGGCCAGCTCTCCTGTCAACAGTACTTTCCCAAAATCGGTACTATAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGCTCTCCTGTCAACAGTACTTTCCCAAAATCGGTACTATAAGG  587

seq1  ATGCATGCTGATTTGAAATGAGTTGGTTGGAATTCTCCTCACAGGAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTGATTTGAAATGAGTTGGTTGGAATTCTCCTCACAGGAATAG  637

seq1  GAAGAATAATGAAATTGATTTTGAGGTCCAGTATGGTTGTTCCTTAAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATAATGAAATTGATTTTGAGGTCCAGTATGGTTGTTCCTTAAGAA  687

seq1  AACACCCTATTATATTTAATTCCTAATTCCTATCTTCTCTCTCTCTCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTATTATATTTAATTCCTAATTCCTATCTTCTCTCTCTCTCTCT  737

seq1  CTCTCTCTCTCTCGCTCTCGCTCTCGCTCTCTCTCTCTTTGTCTGTGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCGCTCTCGCTCTCGCTCTCTCTCTCTTTGTCTGTGAAA  787

seq1  CAGTCACAATTATCAGGTCACCTTTTGATTTAGTATATTACTCCTGGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAATTATCAGGTCACCTTTTGATTTAGTATATTACTCCTGGGGA  837

seq1  GCTGGTTCCTCCTGTTCAAAGATCAAACATGGGTGATAGAAGCATCTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCCTCCTGTTCAAAGATCAAACATGGGTGATAGAAGCATCTATT  887

seq1  TTCAGAGTGATTTAACTTAGGACACACACACACACAATTATTTTTTTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTGATTTAACTTAGGACACACACACACACAATTATTTTTTTTTG  937

seq1  AAGGATAAATGGATAAAAGATTTCCTAATTTGGGCTTTAATAACACAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAATGGATAAAAGATTTCCTAATTTGGGCTTTAATAACACAAGA  987

seq1  TACTTAGTGTATATAACATAGACATGACTTCCAAGTTCTAGATGCTCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTGTATATAACATAGACATGACTTCCAAGTTCTAGATGCTCAAG  1037

seq1  TTACTGTCATGGTTTAGCAAAATTAAATTGGGGAAGAGCTTTATCTCAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCATGGTTTAGCAAAATTAAATTGGGGAAGAGCTTTATCTCAGG  1087

seq1  TATTCAGTGAGAGAGAGAAAACGTATAGTTGGTTTATTCATAGTGATTAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTGAGAGAGAGAAAACGTATAGTTGGTTTATTCATAGTGATTAC  1137

seq1  TCCATCCTCATGAATTC  1166
      |||||||||||||||||
seq2  TCCATCCTCATGAATTC  1154

seq1: chr8_101056124_101057190
seq2: B6Ng01-005H04.g_66_1120

seq1  GAATTCCTATTTCAAGATTCTGTTTGGAACTCAAACTGTGATGCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTCAAGATTCTGTTTGGAACTCAAACTGTGATGCTTTTTT  50

seq1  GCTTATTTTTACCTATTACACAAAGGGAGTCTGAGATTAATCAGCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTTACCTATTACACAAAGGGAGTCTGAGATTAATCAGCCTGCC  100

seq1  TGTGGTACATATTGTGTACTATTCTAATATCTATGAACAATATTTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACATATTGTGTACTATTCTAATATCTATGAACAATATTTTACTT  150

seq1  CTGACATACTAAAACTAAATACTTCCATAAAATGGTTTATTATTATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATACTAAAACTAAATACTTCCATAAAATGGTTTATTATTATAAAA  200

seq1  CCTAATATCAGTAAGAGAGACCTTTCATCTCCCACAGGTACATTCTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATCAGTAAGAGAGACCTTTCATCTCCCACAGGTACATTCTATTA  250

seq1  GGGAAATATATCATTCAAAATGTATATTTTAGTAGACAAATTTTGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATATATCATTCAAAATGTATATTTTAGTAGACAAATTTTGATTCT  300

seq1  AATTAAGTTTACTTGGTTAGACCATGAGCTTAGGAATCCATGTTTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTTTACTTGGTTAGACCATGAGCTTAGGAATCCATGTTTATTGT  350

seq1  TTACTAAATTCACAGTGTAGATGGGAATATTATACATATTCACTATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAATTCACAGTGTAGATGGGAATATTATACATATTCACTATAATT  400

seq1  TACTACATATACACACACTCACATACAACCACACACACATTTATATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATATACACACACTCACATACAACCACACACACATTTATATATAT  450

seq1  ACACACACATACACATATATATGTATATATATATGTATATATGTATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACACATATATATGTATATATATATGTATATATGTATATAT  500

seq1  ATTCCTTCAAGAACATAGTCTTGCAGAAAAGAATAAAAGCCAATCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCAAGAACATAGTCTTGCAGAAAAGAATAAAAGCCAATCATATT  550

seq1  TCAAAACCTTCAATCACCAGGGAAACATTAAGAATTGTCCAATCTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCTTCAATCACCAGGGAAACATTAAGAATTGTCCAATCTCAAAG  600

seq1  GTGTACTTAGCTATGAGTGAGGATTAAGGCATGTGAGTAAGACCTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTAGCTATGAGTGAGGATTAAGGCATGTGAGTAAGACCTTTAGA  650

seq1  CACGTATCTCCATTCTATGTTTCTCTGCACAAGTAATGAATCATTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTATCTCCATTCTATGTTTCTCTGCACAAGTAATGAATCATTTATAT  700

seq1  CTCAGGTGACTTTTATTTTCCACCAAAAGCCTTACATTAAAAAGCAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGACTTTTATTTTCCACCAAAAGCCTTACATTAAAAAGCAAATA  750

seq1  AATAAACCAAAAATAATCAACAGTAGGTGGATATGTTTTACAGGTGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAAAAATAATCAACAGTAGGTGGATATGTTTTACAGGTGAGAG  800

seq1  AGATGACTTTCATCTATTAAAGATTATAGATTCATATTAATGAGATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTTTCATCTATTAAAGATTATAGATTCATATTAATGAGATTCAA  850

seq1  ATTAAAAATCAAACAATATGAAAGCTA-TTTTCCTCTAAATGGCC-TTTT  898
      |||||||||| |||||||||||||||| ||||||||| ||||||| ||||
seq2  ATTAAAAATC-AACAATATGAAAGCTATTTTTCCTCT-AATGGCCTTTTT  898

seq1  TTTTTTTTACTATTATGACAATGAGAAAGTTTGATTAAACCTAATGTGAT  948
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TTTTTTTTACTA-TATGAC-ATGAGAAAGTTTGATTAAACCTAATGTGAT  946

seq1  TTTATGTACCTTATCAATAT-CTCATCATTGGGAATAGTTAGAAGAAAGA  997
      ||||||||||||||| |||| |||||||||||  |||| ||| |||||||
seq2  TTTATGTACCTTATC-ATATCCTCATCATTGG--ATAG-TAG-AGAAAGA  991

seq1  ACAGAAGGAAGAAAAAGAGAATAGCAACAATGAGTGATTATTACAAACAC  1047
       |||| |  || ||||||||||||||   |||||||||   ||||||| |
seq2  TCAGATG--AG-AAAAGAGAATAGCA--CATGAGTGAT--ATACAAACCC  1034

seq1  AGGTGTCTCT-CTAGCACTGT  1067
      |||||||||| ||||||||||
seq2  AGGTGTCTCTCCTAGCACTGT  1055