BAC Information

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BAC

Clone NameB6Ng01-006J14
Chromosome8 (Build37)
Map Location 107,906,563 - 108,064,202
singlet/doubletdoublet
Overlap genePlekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1
Upstream geneCmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5
Downstream geneAgrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J14.bB6Ng01-006J14.g
ACCDH843412DH843413
length1,147965
definitionDH843412|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J14, 5' end.DH843413|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,063,039 - 108,064,202)(107,906,563 - 107,907,530)
sequence
gaattcttagtattagtttgtctacctccagccactgttaaggggaaccc
attcctagctataaatccttcaggtcccatctcacttttccttcatgctt
cctgggccccaccctttgctgcagtccaacccagcatggccttttctgct
cagctatatctttgtgctgattctctcatctacctccagcagctttggat
ctttcttttcttttcttttcttttctttctttcttcctttttttttcttt
ttcttttgtttatttggtttggtttagtttgttttttttgagacagggct
tctctgtgtagctctggctgtcctagaatccactttgtagactaggatgg
ccttgaactcccagatctacctgtgtgtgccaccactgcctggcagaatt
ttttttttattgtgcctcatgtctgaatattttgctcttccaattttaat
gtgctggaaagtagagcccatgttatattttcttccaagtcaggacctca
aagcccacagatgataaatgacaccttatgttgaggcttcccaacctcat
cactttggtggacagttattctacttgtgttgtactctggggcctggaat
gctgacttgtgttcctagggtctggggcatctgggccttagcctggctac
tttgtaaattggcactgagctattagggagatgaagtcaggcggcagcag
gatgcaccttcgcgggaggagcagggcttagaattgattagggatggaaa
cttagggcaaccggtaaggttcagaaagcctagcccttaccatctttcct
tgggtttcagacttgaagctgcacctacagagtacagattatggcaactt
cctggccaatgaagcgtcacctctgacggtgtcagtcatcgatgacaagc
tcaaggagaagatggtagtagagttccgccacatgagaaaccatgcttat
gagccgctcgcagcttcctggacttcatacgtgagtgagcgcacagtgct
gggcaaggtagttctatgcctgcagacgatggcaccagaattgtcttggt
cagcagctatgtgcttctgtcagggacaaatggcactctgtcaagcagcg
ttgttaagaatacttaaagtcttccaagtgataactgaatgcattca
gaattccttggcaaacccatcgccaacctcttgtttttggggcccccttg
gtcattttgacttgatgcttttggttagagttgtctactggtttcactgg
cagtgacactctgttttctcagagaagaaatctaggcatttttcttgtta
tttacttttttatttgtttataataaaaaataagtgatttgcaccgttga
ctgggcatatgcattctgggggtttccacagaaaatgagccttgggcaac
tggtctgtgttggtcgtctgtgggaccaacatttctgggttctctagccc
tcgtgtaaatacttgcccaggactgaataagagacagacctggacagtcc
cctctggatgagcaggtccacgcaacggccatattttctggcgaaaggca
gtgtgagctgcaaggaaaggcctatcttatccttgatttctaggccggcc
tctcactctagctccgtgtgaggggtgctcccttatctgagcagggaagg
gaagggagcctggctatagggagctctggtgctctagggctctggctacc
agagaactgagcacagtgaccataaaaaatgtgctccctgaagctcgtat
ccactttctagacatagatgctgactttatgtttataactaacatacaag
ctagagagctaacagtaattgggtaatcatgtgtttaaggtaaatgacat
tagcattatgtacttgattataaaaggctaggttcctgagaagttcacta
aatcacacataattctgaaattactctagagaatcagaaaagagaatatg
taaaaccttaattggtctacaaaatgagtttagccgggcagtggtggtgc
acacctttaatcccagcacttggaggcagaggcaggcggacttctgagtt
cgagaccagcctggtctacagagtgagttcaggacagcagggctacacag
agaaaccctgtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108063039_108064202
seq2: B6Ng01-006J14.b_29_1175 (reverse)

seq1  TGAATGACCATTCTAGTTATACCACTTGAGAAGACTTTAAAGACATTCTT  50
      ||||||  ||||| ||||||  |||||| |||||||||||    |||| |
seq2  TGAATG--CATTC-AGTTAT--CACTTG-GAAGACTTTAA--GTATTC-T  41

seq1  TAACAACAGCTGGCCTGACAGAGCTGCCATCTGGTCACCTGACAGAAGCA  100
      ||||||| ||| || |||||||| |||||| | ||| |||||||||||||
seq2  TAACAAC-GCT-GCTTGACAGAG-TGCCAT-TTGTC-CCTGACAGAAGCA  86

seq1  CAATAGCTGCTGACCAAGACCATTCTGGTGCCATCGTCTGCAGGCATAGA  150
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  C-ATAGCTGCTGACCAAGACAATTCTGGTGCCATCGTCTGCAGGCATAGA  135

seq1  ACTACCTTGCCCAGCACTGTGCGCTCACTCACGTTATGAAGTCCAGGAAG  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTACCTTGCCCAGCACTGTGCGCTCACTCACG-TATGAAGTCCAGGAAG  184

seq1  CTGGCGAGCGGCTCATAAGCATGGTTTCTCATGTGGCGGAACTCTACTAC  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-GCGAGCGGCTCATAAGCATGGTTTCTCATGTGGCGGAACTCTACTAC  233

seq1  CATCTTCTCCTTGAGCTTGTCATCGATGACTGACACCGTCAGAGGTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCCTTGAGCTTGTCATCGATGACTGACACCGTCAGAGGTGACG  283

seq1  CTTCATTGGCCAGGAAGTTGCCATAATCTGTACTCTGTAGGTGCAGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGGCCAGGAAGTTGCCATAATCTGTACTCTGTAGGTGCAGCTTC  333

seq1  AAGTCTGAAACCCAAGGAAAGATGGTAAGGGCTAGGCTTTCTGAACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAAACCCAAGGAAAGATGGTAAGGGCTAGGCTTTCTGAACCTTA  383

seq1  CCGGTTGCCCTAAGTTTCCATCCCTAATCAATTCTAAGCCCTGCTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTGCCCTAAGTTTCCATCCCTAATCAATTCTAAGCCCTGCTCCTCC  433

seq1  CGCGAAGGTGCATCCTGCTGCCGCCTGACTTCATCTCCCTAATAGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAAGGTGCATCCTGCTGCCGCCTGACTTCATCTCCCTAATAGCTCAG  483

seq1  TGCCAATTTACAAAGTAGCCAGGCTAAGGCCCAGATGCCCCAGACCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTTACAAAGTAGCCAGGCTAAGGCCCAGATGCCCCAGACCCTAG  533

seq1  GAACACAAGTCAGCATTCCAGGCCCCAGAGTACAACACAAGTAGAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAGTCAGCATTCCAGGCCCCAGAGTACAACACAAGTAGAATAAC  583

seq1  TGTCCACCAAAGTGATGAGGTTGGGAAGCCTCAACATAAGGTGTCATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACCAAAGTGATGAGGTTGGGAAGCCTCAACATAAGGTGTCATTTA  633

seq1  TCATCTGTGGGCTTTGAGGTCCTGACTTGGAAGAAAATATAACATGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTGGGCTTTGAGGTCCTGACTTGGAAGAAAATATAACATGGGCT  683

seq1  CTACTTTCCAGCACATTAAAATTGGAAGAGCAAAATATTCAGACATGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCCAGCACATTAAAATTGGAAGAGCAAAATATTCAGACATGAGG  733

seq1  CACAATAAAAAAAAAATTCTGCCAGGCAGTGGTGGCACACACAGGTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAAAAAAAATTCTGCCAGGCAGTGGTGGCACACACAGGTAGAT  783

seq1  CTGGGAGTTCAAGGCCATCCTAGTCTACAAAGTGGATTCTAGGACAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTTCAAGGCCATCCTAGTCTACAAAGTGGATTCTAGGACAGCCA  833

seq1  GAGCTACACAGAGAAGCCCTGTCTCAAAAAAAACAAACTAAACCAAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACACAGAGAAGCCCTGTCTCAAAAAAAACAAACTAAACCAAACCA  883

seq1  AATAAACAAAAGAAAAAGAAAAAAAAAGGAAGAAAGAAAGAAAAGAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAAAGAAAAAGAAAAAAAAAGGAAGAAAGAAAGAAAAGAAAAG  933

seq1  AAAAGAAAAGAAAGATCCAAAGCTGCTGGAGGTAGATGAGAGAATCAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAGATCCAAAGCTGCTGGAGGTAGATGAGAGAATCAGCA  983

seq1  CAAAGATATAGCTGAGCAGAAAAGGCCATGCTGGGTTGGACTGCAGCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATAGCTGAGCAGAAAAGGCCATGCTGGGTTGGACTGCAGCAAA  1033

seq1  GGGTGGGGCCCAGGAAGCATGAAGGAAAAGTGAGATGGGACCTGAAGGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGCCCAGGAAGCATGAAGGAAAAGTGAGATGGGACCTGAAGGAT  1083

seq1  TTATAGCTAGGAATGGGTTCCCCTTAACAGTGGCTGGAGGTAGACAAACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTAGGAATGGGTTCCCCTTAACAGTGGCTGGAGGTAGACAAACT  1133

seq1  AATACTAAGAATTC  1164
      ||||||||||||||
seq2  AATACTAAGAATTC  1147

seq1: chr8_107906563_107907530
seq2: B6Ng01-006J14.g_63_1027

seq1  GAATTCCTTGGCAAACCCATCGCCAACCTCTTGTTTTTGGGGCCCCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGCAAACCCATCGCCAACCTCTTGTTTTTGGGGCCCCCTTG  50

seq1  GTCATTTTGACTTGATGCTTTTGGTTAGAGTTGTCTACTGGTTTCACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTGACTTGATGCTTTTGGTTAGAGTTGTCTACTGGTTTCACTGG  100

seq1  CAGTGACACTCTGTTTTCTCAGAGAAGAAATCTAGGCATTTTTCTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACACTCTGTTTTCTCAGAGAAGAAATCTAGGCATTTTTCTTGTTA  150

seq1  TTTACTTTTTTATTTGTTTATAATAAAAAATAAGTGATTTGCACCGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTTATTTGTTTATAATAAAAAATAAGTGATTTGCACCGTTGA  200

seq1  CTGGGCATATGCATTCTGGGGGTTTCCACAGAAAATGAGCCTTGGGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATATGCATTCTGGGGGTTTCCACAGAAAATGAGCCTTGGGCAAC  250

seq1  TGGTCTGTGTTGGTCGTCTGTGGGACCAACATTTCTGGGTTCTCTAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTGTTGGTCGTCTGTGGGACCAACATTTCTGGGTTCTCTAGCCC  300

seq1  TCGTGTAAATACTTGCCCAGGACTGAATAAGAGACAGACCTGGACAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTAAATACTTGCCCAGGACTGAATAAGAGACAGACCTGGACAGTCC  350

seq1  CCTCTGGATGAGCAGGTCCACGCAACGGCCATATTTTCTGGCGAAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGATGAGCAGGTCCACGCAACGGCCATATTTTCTGGCGAAAGGCA  400

seq1  GTGTGAGCTGCAAGGAAAGGCCTATCTTATCCTTGATTTCTAGGCCGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCTGCAAGGAAAGGCCTATCTTATCCTTGATTTCTAGGCCGGCC  450

seq1  TCTCACTCTAGCTCCGTGTGAGGGGTGCTCCCTTATCTGAGCAGGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCTAGCTCCGTGTGAGGGGTGCTCCCTTATCTGAGCAGGGAAGG  500

seq1  GAAGGGAGCCTGGCTATAGGGAGCTCTGGTGCTCTAGGGCTCTGGCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGCCTGGCTATAGGGAGCTCTGGTGCTCTAGGGCTCTGGCTACC  550

seq1  AGAGAACTGAGCACAGTGACCATAAAAAATGTGCTCCCTGAAGCTCGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTGAGCACAGTGACCATAAAAAATGTGCTCCCTGAAGCTCGTAT  600

seq1  CCACTTTCTAGACATAGATGCTGACTTTATGTTTATAACTAACATACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCTAGACATAGATGCTGACTTTATGTTTATAACTAACATACAAG  650

seq1  CTAGAGAGCTAACAGTAATTGGGTAATCATGTGTTTAAGGTAAATGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGCTAACAGTAATTGGGTAATCATGTGTTTAAGGTAAATGACAT  700

seq1  TAGCATTATGTACTTGATTATAAAAGGCTAGGTTCCTGAGAAGTTCACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTATGTACTTGATTATAAAAGGCTAGGTTCCTGAGAAGTTCACTA  750

seq1  AATCACACATAATTCTGAAATTACTCTAGAGAATCAGAAAAGAGAATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACATAATTCTGAAATTACTCTAGAGAATCAGAAAAGAGAATATG  800

seq1  TAAAACCTTAATTGGTCTACAAAATGAGTTTAGCCGGGCAGTGGTGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTTAATTGGTCTACAAAATGAGTTTAGCCGGGCAGTGGTGGTGC  850

seq1  ACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGACTTCTGAGT  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACCTTTAATCCCAGCACTT-GGAGGCAGAGGCAGGCGGACTTCTGAGT  899

seq1  TCGAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACA  950
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TCGAGACCAGCCTGGTCTACAGAGTGAGTT-CAGGACAG-CAGGGCTACA  947

seq1  CAGAGAAACCCTGTCTCA  968
      ||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCA  965