BAC Information

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BAC

Clone NameB6Ng01-007K10
Chromosome8 (Build37)
Map Location 46,235,704 - 46,459,403
singlet/doubletdoublet
Overlap geneEG622523, F11, Klkb1, Cyp4v3, BC035537
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a
Downstream geneTlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007K10.bB6Ng01-007K10.g
ACCDH844153DH844154
length1,151449
definitionDH844153|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K10, 5' end.DH844154|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,235,704 - 46,236,868)(46,458,949 - 46,459,403)
sequence
gaattctctgccttcctccactgatctctagctgggtgttctcctggtga
aacgaaaccaaaagccaaaatggtatcatttcagctatcccagaatcccg
tggctctgataatggacggcggagccagacggaccaactatgaaccttag
cggtctgctttctctgcacacgttactgtttgcgcatgtttcccttgcag
catcccaccgtgttatcatgggtttgtcaacttaggtgggtttcttcttc
aaggctttcacttaatctgcatcccaagggtgcagcacatggatgcggaa
agtgtggggcattgtggcgcctgtgctcccactggcaaattttcatttag
taattctagagtaaaagtcagacactgcggtcatgagtcattcacttcaa
ggttacgaagtgtcaggagccacagaagcgagtgttgtcagggggcagga
catgcacccccaaatgcgcctttcttagtctaaagcttgttctgagggaa
agatacttggcagatgacaggagacaaaggggtcctaacatctcttcttc
atataaaaatgggaattaacagagcagacacaactcaaaagttgaaaaaa
aaaaattctggaacaaaactgttcctagaccaggagaaaatgaaacagtt
tttgatgtagagttataattaagaaacttgttaaaataattgttatttat
actccttatacaattcgtgtttcttgcctgtaactgcttctccattttga
tgtaacaaaagcatgtacataaaacatctcgtggagcacgagagcttatg
aagagccagacatatacagccacacatacactgccttcccaccactgcta
ccctggcagccatcaactgccaggagctctcaggtattgatgaagccttg
tggtcccttcccacatctgtgttggactgttgctcttgtggcaggtatgt
ggcaagaaggcatggctgctgtggatttgtggatgcaatgttcttgtcta
gaagaccctatttgcagttgcctcctgacctatggctactaggagggttc
tggccctcttcatgatgggtccggagcaattgggatagtggaatgaaggt
ctgttggcactggattctagtcattattcctaaccttggctgggtgcgag
c
agaacatgagctacttcacgagactgttctttctttccattctttcggct
gttctttcttacaatgctttggttcctgccacgcatgcatgcccaccctt
ctgggcaaatacagtcctcacagagaagaacagctcaatcatgtttttaa
cattgggcagtgatgttacttttctgcagctggtataggaaaccttggaa
acatgaggaagactgtcagctggacagtgaaggggaggctctacctaggt
gggatgtaaatatatggaggtgtgtttctattgggaggaagtcaggaatc
actcgagggcctcttaggaagctgctgtcaggtggaagtgaggtagccac
acaagggacttagcacagcactgttagaacatagggcttccttacatgtc
aggtaataaacattaatatcattgttaatagctgaaggaaactttggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46235704_46236868
seq2: B6Ng01-007K10.b_42_1192

seq1  GAATTCTCTGCCTTCCTCCACTGATCTCTAGCTGGGTGTTCTCCTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCTTCCTCCACTGATCTCTAGCTGGGTGTTCTCCTGGTGA  50

seq1  AACGAAACCAAAAGCCAAAATGGTATCATTTCAGCTATCCCAGAATCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAACCAAAAGCCAAAATGGTATCATTTCAGCTATCCCAGAATCCCG  100

seq1  TGGCTCTGATAATGGACGGCGGAGCCAGACGGACCAACTATGAACCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGATAATGGACGGCGGAGCCAGACGGACCAACTATGAACCTTAG  150

seq1  CGGTCTGCTTTCTCTGCACACGTTACTGTTTGCGCATGTTTCCCTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTGCTTTCTCTGCACACGTTACTGTTTGCGCATGTTTCCCTTGCAG  200

seq1  CATCCCACCGTGTTATCATGGGTTTGTCAACTTAGGTGGGTTTCTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACCGTGTTATCATGGGTTTGTCAACTTAGGTGGGTTTCTTCTTC  250

seq1  AAGGCTTTCACTTAATCTGCATCCCAAGGGTGCAGCACATGGATGCGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTCACTTAATCTGCATCCCAAGGGTGCAGCACATGGATGCGGAA  300

seq1  AGTGTGGGGCATTGTGGCGCCTGTGCTCCCACTGGCAAATTTTCATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGGCATTGTGGCGCCTGTGCTCCCACTGGCAAATTTTCATTTAG  350

seq1  TAATTCTAGAGTAAAAGTCAGACACTGCGGTCATGAGTCATTCACTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAGAGTAAAAGTCAGACACTGCGGTCATGAGTCATTCACTTCAA  400

seq1  GGTTACGAAGTGTCAGGAGCCACAGAAGCGAGTGTTGTCAGGGGGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACGAAGTGTCAGGAGCCACAGAAGCGAGTGTTGTCAGGGGGCAGGA  450

seq1  CATGCACCCCCAAATGCGCCTTTCTTAGTCTAAAGCTTGTTCTGAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACCCCCAAATGCGCCTTTCTTAGTCTAAAGCTTGTTCTGAGGGAA  500

seq1  AGATACTTGGCAGATGACAGGAGACAAAGGGGTCCTAACATCTCTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTGGCAGATGACAGGAGACAAAGGGGTCCTAACATCTCTTCTTC  550

seq1  ATATAAAAATGGGAATTAACAGAGCAGACACAACTCAAAAGTTGAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATGGGAATTAACAGAGCAGACACAACTCAAAAGTTGAAAAAA  600

seq1  AAAAATTCTGGAACAAAACTGTTCCTAGACCAGGAGAAAATGAAACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCTGGAACAAAACTGTTCCTAGACCAGGAGAAAATGAAACAGTT  650

seq1  TTTGATGTAGAGTTATAATTAAGAAACTTGTTAAAATAATTGTTATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTAGAGTTATAATTAAGAAACTTGTTAAAATAATTGTTATTTAT  700

seq1  ACTCCTTATACAATTCGTGTTTCTTGCCTGTAACTGCTTCTCCATTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTATACAATTCGTGTTTCTTGCCTGTAACTGCTTCTCCATTTTGA  750

seq1  TGTAACAAAAGCATGTACATAAAACATCTCGTGGAGCACGAGAGCTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAAAGCATGTACATAAAACATCTCGTGGAGCACGAGAGCTTATG  800

seq1  AAGAGCCAGACATATACAGCCACACATACACTGCCTTCCCACCACTGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGACATATACAGCCACACATACACTGCCTTCCCACCACTGCTA  850

seq1  CCCTGGCAGCCATCAACTGCCAGGAGCTCTCAGGTATTGATGAAGCCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCAGCCATCAACTGCCAGGAGCTCTCAGGTATTGATGAAGCCTTG  900

seq1  TGGTCCCCTCCCACATCTGTGTTGGACTGTTGCTCTTGT-GCAGGTATGT  949
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGTCCCTTCCCACATCTGTGTTGGACTGTTGCTCTTGTGGCAGGTATGT  950

seq1  -GCAAGAAGCCATGGCTGCTGTGATTTTGTGAATGCAATG-TCTTGTCTA  997
       |||||||| |||||||||||||  |||||| |||||||| |||||||||
seq2  GGCAAGAAGGCATGGCTGCTGTGGATTTGTGGATGCAATGTTCTTGTCTA  1000

seq1  GAAGACACTATTTTGCAGTGGCCCTCCCTGACCTATGGCTACTAGAGTGT  1047
      |||||| ||| |||||||| |||   |||||||||||||||||||   | 
seq2  GAAGACCCTA-TTTGCAGTTGCC--TCCTGACCTATGGCTACTAGGAGGG  1047

seq1  TTCTGGCCCTCTTCATTGATGGTCCCCGAGCCATTCTGGGATAGTGTGAC  1097
      ||||||||||||||| ||||||  || |||| ||  |||||||||| || 
seq2  TTCTGGCCCTCTTCA-TGATGGGTCCGGAGCAAT--TGGGATAGTG-GA-  1092

seq1  ATGAATGTCCTGTTTGGCACTGGATTCTCCATAGTCATTTATTCTCTACC  1147
      ||||| || ||| ||||||||||||||    |||||| |||||| ||| |
seq2  ATGAAGGT-CTG-TTGGCACTGGATTC----TAGTCA-TTATTC-CTAAC  1134

seq1  CTTTGGCTGGTTGCGAGC  1165
      | |||||||| |||||||
seq2  C-TTGGCTGGGTGCGAGC  1151

seq1: chr8_46458949_46459403
seq2: B6Ng01-007K10.g_68_522 (reverse)

seq1  TCCCAAAGTTTCCTTCAGCTATTAACAATGATATTAATGTTTATTACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGTTTCCTTCAGCTATTAACAATGATATTAATGTTTATTACCTG  50

seq1  ACATGTATGGAAGCCCTATGTTCTAACAGTGCTGTGCTAAGTCCCTTGTG  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAGGAAGCCCTATGTTCTAACAGTGCTGTGCTAAGTCCCTTGTG  100

seq1  TGGCTACCTCACTTCCACCTGACAGCAGCTTCCTAAGAGGCCCTCGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACCTCACTTCCACCTGACAGCAGCTTCCTAAGAGGCCCTCGAGTG  150

seq1  ATTCCTGACTTCCTCCCAATAGAAACACACCTCCATATATTTACATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGACTTCCTCCCAATAGAAACACACCTCCATATATTTACATCCCA  200

seq1  CCTAGGTAGAGCCTCCCCTTCACTGTCCAGCTGACAGTCTTCCTCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTAGAGCCTCCCCTTCACTGTCCAGCTGACAGTCTTCCTCATGTT  250

seq1  TCCAAGGTTTCCTATACCAGCTGCAGAAAAGTAACATCACTGCCCAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGTTTCCTATACCAGCTGCAGAAAAGTAACATCACTGCCCAATGT  300

seq1  TAAAAACATGATTGAGCTGTTCTTCTCTGTGAGGACTGTATTTGCCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATGATTGAGCTGTTCTTCTCTGTGAGGACTGTATTTGCCCAGA  350

seq1  AGGGTGGGCATGCATGCGTGGCAGGAACCAAAGCATTGTAAGAAAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGCATGCATGCGTGGCAGGAACCAAAGCATTGTAAGAAAGAACA  400

seq1  GCCGAAAGAATGGAAAGAAAGAACAGTCTCGTGAAGTAGCTCATGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAAGAATGGAAAGAAAGAACAGTCTCGTGAAGTAGCTCATGTTCTG  450

seq1  AATTC  455
      |||||
seq2  AATTC  455