BAC Information

Click to search

BAC

Clone NameB6Ng01-007L15
Chromosome8 (Build37)16 (Build37)
Map Location 95,691,694 - 95,691,94450,898,474 - 50,899,606
singlet/doubletsingletsinglet
Overlap geneCes3
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523
Downstream geneEs22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007L15.bB6Ng01-007L15.g
ACCDH844208DH844209
length6881,120
definitionDH844208|Mus musculus domesticus DNA, BAC clone: B6Ng01-007L15, 5' end.DH844209|Mus musculus domesticus DNA, BAC clone: B6Ng01-007L15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,691,694 - 95,691,944)(50,898,474 - 50,899,606)
sequence
gaattctaggttaatatttttgagatgggtaggtgttcccatcccccaac
cagggaccatgcctaacctccagacatggtctctacaagttctctctgcc
ctttgttgggtgtttcgactaatggcatccttgttggttcctgggagcat
ctagcttttctggtatcttgggctttctagtggctatccccagtttccca
ttccccagtgctacacatctctgttcaaattcctgaccctctggacttct
cccctgcctcctcccacacctgatcctgctccccttttccctccccctcc
tctctccttcccagatccctccctccctctaccgctcttgttttgttccc
tcttttaagtagaacttaaacttccacactttggtcatccttcttcttga
gcttcatatggtctgtgagttgtatcatgggtatttcgagcttttcagct
aatatccacttatcaatgagtacataccatgtgtgttcttttgtgactgg
gttacctcactcaggatgatattttctagttccatccatttgcatgtgaa
tttcatgacgttgttgtttttagtagctgagtagtactccattgtgtaaa
tgaacgacattttctgtatccattcctttgttgagggccatctgggttgt
ttccagcctctggttattataaataaggctgctatgaa
gaattctaagactgctaccccaggctatgatacagatttcttcctctcta
aagatgttaagcattttcttttcatcttatttatttttttattttcggaa
gccttgttttaaggccatctatgtcttcaaatacacttgtaaaaatgggg
aagaacagagaaaaggaaggcaggaaggaaaaaaggagacacccaagata
tgtgctgttttttttcggcccaatgacaccacttccttcagtttccagag
cgtgttcattgtattactaatggattctagcaatcaccctctgcatctat
tgtctatgtcaagagatgaccagtagaatgagatatgtttcaaagtgtgt
ttgtgtgtctgtgtgtctgtgtgtctgtgtgtgtctgtgtgagagacacc
ctaacccagatcagcctactttgaacgtctgtccattctcttgtaactgt
aacttctgattttccttatgaggccatttttttttctgaaaaatattatt
agcagttttaattggtacatttttgtgtttagattcttattctaaatatt
agctcatttattccttcctctggatttaaatttgtcccagatgatatgtt
tctctgcacacagtaacattttcacagcaacacttctcccaaactaagac
aataatgtcaggtcgctaaattgtctatagactggcttgagccctacaat
cgtgaagacagatgctaactgcatcttgttttgtgttggatgggtgtgcc
cattattttgttattttgtctcacacaaaacaaagtcctagtaaatacat
tatgctgtgcaaaatttaattttaagaacacatcaaggtacccaaataga
ataacatcctgaaattggaaagaaacaacacccgagaaatgaaaaggaat
gaagtctattatgaggcacatgccttagctgcaacttttatctggaatga
gttcaaacgcaacaattaatgtcacactcacttcatcagattagtctaaa
gcttattggctcctgcataataatcagggactcagtaaaagatgtcgaag
cgatggagaaccctgagtttcaattcaaatctttgtttagatcattcttt
tatatattcataaactgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_95691694_95691944
seq2: B6Ng01-007L15.b_500_737 (reverse)

seq1  TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG  50
      |||||||||||||||||||||||| ||||| |||||||| ||||||||||
seq2  TTCATAGCAGCCTTATTTATAATAACCAGAGGCTGGAAACAACCCAGATG  50

seq1  TCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG  100
       ||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  GCCCTCAACAAAGGAATGGATACAGAAAATGTCGTTCATTTACACAATGG  100

seq1  AGTACTACTCAGCTATTAAAAACAATGAATTTATGAAACTCTTAGGCAAA  150
      ||||||||||||||| |||||||||  |  | |||||| ||  | |||||
seq2  AGTACTACTCAGCTACTAAAAACAACAACGTCATGAAATTCACATGCAAA  150

seq1  TGGATGGATCTGGAGGATATCATCCTGAGATATCATCCTGAGTGAGGTAA  200
      |||||||| || ||             | |||||||||||||||||||||
seq2  TGGATGGAACTAGA-------------AAATATCATCCTGAGTGAGGTAA  187

seq1  CCCAATCACAAAAGAACACACATGACATGTACTCACTGATAAGTGGATAT  250
      |||| |||||||||||||||||||  ||||||||| ||||||||||||||
seq2  CCCAGTCACAAAAGAACACACATGGTATGTACTCATTGATAAGTGGATAT  237

seq1  T  251
      |
seq2  T  238

seq1: chr16_50898474_50899606
seq2: B6Ng01-007L15.g_68_1187

seq1  GAATTCTAAGACTGCTACCCCAGGCTATGATACAGATTTCTTCCTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGACTGCTACCCCAGGCTATGATACAGATTTCTTCCTCTCTA  50

seq1  AAGATGTTAAGCATTTTCTTTTCATCTTATTTATTTTTTTATTTTCGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTAAGCATTTTCTTTTCATCTTATTTATTTTTTTATTTTCGGAA  100

seq1  GCCTTGTTTTAAGGCCATCTATGTCTTCAAATACACTTGTAAAAATGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTTTAAGGCCATCTATGTCTTCAAATACACTTGTAAAAATGGGG  150

seq1  AAGAACAGAGAAAAGGAAGGCAGGAAGGAAAAAAGGAGACACCCAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGAGAAAAGGAAGGCAGGAAGGAAAAAAGGAGACACCCAAGATA  200

seq1  TGTGCTGTTTTTTTTCGGCCCAATGACACCACTTCCTTCAGTTTCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTTTTTTTCGGCCCAATGACACCACTTCCTTCAGTTTCCAGAG  250

seq1  CGTGTTCATTGTATTACTAATGGATTCTAGCAATCACCCTCTGCATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCATTGTATTACTAATGGATTCTAGCAATCACCCTCTGCATCTAT  300

seq1  TGTCTATGTCAAGAGATGACCAGTAGAATGAGATATGTTTCAAAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTCAAGAGATGACCAGTAGAATGAGATATGTTTCAAAGTGTGT  350

seq1  TTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGAGAGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGAGAGACACC  400

seq1  CTAACCCAGATCAGCCTACTTTGAACGTCTGTCCATTCTCTTGTAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCAGATCAGCCTACTTTGAACGTCTGTCCATTCTCTTGTAACTGT  450

seq1  AACTTCTGATTTTCCTTATGAGGCCATTTTTTTTTCTGAAAAATATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGATTTTCCTTATGAGGCCATTTTTTTTTCTGAAAAATATTATT  500

seq1  AGCAGTTTTAATTGGTACATTTTTGTGTTTAGATTCTTATTCTAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTTAATTGGTACATTTTTGTGTTTAGATTCTTATTCTAAATATT  550

seq1  AGCTCATTTATTCCTTCCTCTGGATTTAAATTTGTCCCAGATGATATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTTATTCCTTCCTCTGGATTTAAATTTGTCCCAGATGATATGTT  600

seq1  TCTCTGCACACAGTAACATTTTCACAGCAACACTTCTCCCAAACTAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCACACAGTAACATTTTCACAGCAACACTTCTCCCAAACTAAGAC  650

seq1  AATAATGTCAGGTCGCTAAATTGTCTATAGACTGGCTTGAGCCCTACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTCAGGTCGCTAAATTGTCTATAGACTGGCTTGAGCCCTACAAT  700

seq1  CGTGAAGACAGATGCTAACTGCATCTTGTTTTGTGTTGGATGGGTGTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGACAGATGCTAACTGCATCTTGTTTTGTGTTGGATGGGTGTGCC  750

seq1  CATTATTTTGTTATTTTGTCTCACACAAAACAAAGTCCTAGTAAATACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTGTTATTTTGTCTCACACAAAACAAAGTCCTAGTAAATACAT  800

seq1  TATGCTGTGCAAAATTTAATTTTAAGAACACATCAAGGTACCCAAAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATGCTGTGCAAAATTTAATTTTAAGAACACATCAAGGTACCC-AAATAG  849

seq1  AATAACATCCTGAAATTTGAAAGAAACAACACCCGAGAAATGAAAAGGAA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATAACATCCTGAAATTGGAAAGAAACAACACCCGAGAAATGAAAAGGAA  899

seq1  TTGAAGTCTATTATGAGGCACATGCCTAAGCTGCACACTTATTAATCTGG  950
       |||||||||||||||||||||||||| ||||||| |||  || ||||||
seq2  -TGAAGTCTATTATGAGGCACATGCCTTAGCTGCA-ACT--TTTATCTGG  945

seq1  AATGAGTTCAAACGCAACAATTAATGTCACACCTCACTTCATTCAGATTA  1000
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  AATGAGTTCAAACGCAACAATTAATGTCACA-CTCACTTCA-TCAGATTA  993

seq1  GTCTAAAGCTTATCTGTCTCCAGCAATAATAATCA-GGACTCAGTAAAAG  1049
      ||||||||||||| || |||| || |||||||||| ||||||||||||||
seq2  GTCTAAAGCTTAT-TGGCTCCTGC-ATAATAATCAGGGACTCAGTAAAAG  1041

seq1  ATGTCAGAGCAGATGGAGACACTAGAGTTTCCAATTAAAATCTTTTGTTA  1099
      |||||  ||| ||||||||  |  |||||| ||||| ||||||||  |||
seq2  ATGTCGAAGC-GATGGAGAACCCTGAGTTT-CAATTCAAATCTTTGTTTA  1089

seq1  GATTCATATTCTTTTAT-TATTCATTAAACTGACT  1133
      |||    |||||||||| |||||| ||||||||||
seq2  GAT---CATTCTTTTATATATTCA-TAAACTGACT  1120