BAC Information

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BAC

Clone NameB6Ng01-008C19
Chromosome8 (Build37)
Map Location 22,556,671 - 22,814,583
singlet/doubletdoublet
Overlap geneLOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843
Downstream geneLOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008C19.bB6Ng01-008C19.g
ACCDH844524DH844525
length1,1681,026
definitionDH844524|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C19, 5' end.DH844525|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,556,671 - 22,557,835)(22,813,560 - 22,814,583)
sequence
gaattctcatgatcctcacatatgctgctcctgacttttgactctgcctt
taggtagtcttgactcactctcaaaagacattgcctatatgttaagaaca
actgacactatgggtttcaggtttacagagttctaaaatgatatattttt
taaaaactatactgtccttaaaaactgtttaagttttaatgaaccacacc
tgaattatgcctctggcttctaaaccgtgggttacatatggctctgtgga
gacaacttttctcaacattagaaaaagttagtcagagacagaatgggtag
gataaaagacagtgcatcccacactatgatctgcattaatctgcagtgtc
cacagtcgtataggacaaaatacagtttttatacagaaaacgtctttata
tacagaaagtatacatgtctaatgactgcagtgtgctctacaaggtacac
tcaaatgacttaccctacagctttcaagggcttaattcagcatggaagag
atatgcaagataaataaagaagtcggtaggcagttgttgaagcaggggac
actagtgatgtacagggtgctaagagtcaggatataagtcatcatactcc
ttcaggaaaaaccatgtcctaaatgaaagaacagcagttgtagtggcctc
cagattacaggttctagtaccacagatggtgtgggttcacagaaaacata
gttgtgggcattcaatagtgatggaaccatgctaggtaaattgaataccc
tttcacactttgaggaagaaaagatgctagaagcatcttacttggtcagt
tatggcaaccatgacagagactagctccactgattgagctagaagagaaa
gccaatacaactcttttcacatcaaatattacagaattccagtttagaag
attgcaaacagaatgcagttatcatagtccacaagacatttgtctttaat
aagtcactggtgaactgagcaaaataaattgaacattacatcaatattgg
tccatccttctgaaatgtaattatctgaggaatataaggtcttctgtttt
caggaactgttagcttaactcagttaagtgttcatcaaccaaaacccatg
gacacagtcatattgtttactctctctacttaaggtctctcaaggccctc
tctatttacatagctaaa
gaattcaattcactggtgacataaggccatattagtttcgtggccccata
ggaaaagattcacaaaatcttccttcctgagggtgatttccctaaatcat
gcaaagaactgactgtccagttcacctggtcaaggtctggtccaggctcc
aagttcaaaagccaataatcctttgattaatctatttattaaattaggca
atgaacagctcttttcttccccgaccactgagagataaatacccaagcag
atgggaaacagggtaagatagcaaggcctacttcatcattatcagtggga
ggggtgggaggcactgaacacacagagcaatatcatgttggaagccatga
ggacaaaagacggaacttgagggttacagactctcccagttcccatcaat
gagtgccttctctcagtggagatgcttctctgccctataaatgcaggctg
gctactcattctccacacattgagctcctgctcactaatcttccaggtga
ctcccagtcatgaagacacttgtcctcctctctgcccttgccctgctggc
cttccaggtccaggctgatcctatcaaaaacacagatgaagagactaaaa
ctggggagcagccagaggaagaggaccaggctgtttctgtctcctttgga
ggcacagaaggctctgctcttcaatatgtaggtgagtgctcaaaccctgt
gatggaggctttggtgtctcttgaggcaggactgaagatgagtctggaat
catgtctataacagcttgggtcatgtagttgttctcttgatactctaaga
actttttctgtcttattaatagaagtaacagtgagagtcaacccagtgtt
taagttttttcatttaaaaatttatctgcctgtgacttcctgagctctgt
tcccatgctaggttcagggataaatggagttacagacatcaagaaaaaaa
attactatgagaaatctttcaaaatatagaacatatggatctttctcata
tacatgagtaataaattggttaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_22556671_22557835
seq2: B6Ng01-008C19.b_47_1214

seq1  GAATTCTCATGATCCTCACATATGCTGCTCCTGACTTTTGACTCTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGATCCTCACATATGCTGCTCCTGACTTTTGACTCTGCCTT  50

seq1  TAGGTAGTCTTGACTCACTCTCAAAAGACATTGCCTATATGTTAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGTCTTGACTCACTCTCAAAAGACATTGCCTATATGTTAAGAACA  100

seq1  ACTGACACTATGGGTTTCAGGTTTACAGAGTTCTAAAATGATATATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACTATGGGTTTCAGGTTTACAGAGTTCTAAAATGATATATTTTT  150

seq1  TAAAAACTACACTGTCCTTAAAAACTGTTTAAGTTTTAATAAACCACACC  200
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TAAAAACTATACTGTCCTTAAAAACTGTTTAAGTTTTAATGAACCACACC  200

seq1  TGAATTATGCCTCTGGCTTCTAAACCGTGGGTTACATATGGCTCTGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATGCCTCTGGCTTCTAAACCGTGGGTTACATATGGCTCTGTGGA  250

seq1  GACAACTTTTCTCAACATTAGAAAAAGTTAGTCAGAGACAGAATGGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTTTTCTCAACATTAGAAAAAGTTAGTCAGAGACAGAATGGGTAG  300

seq1  GATAAAAAACAGTGCATCCCACACTATGATCTGCATTAATCTGCAGTGTC  350
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGACAGTGCATCCCACACTATGATCTGCATTAATCTGCAGTGTC  350

seq1  CACAGTCGTATAGGACAAAATACAGTTTTTATACAGAAAACGTCTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCGTATAGGACAAAATACAGTTTTTATACAGAAAACGTCTTTATA  400

seq1  TACAGAAAGTATACATGTCTAATGACTGCAGTGTGCTCTACAAGGTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAGTATACATGTCTAATGACTGCAGTGTGCTCTACAAGGTACAC  450

seq1  TCAAATGACTTACCCTACAGCTTTCAAGGGCTTAATTCAGCATGGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGACTTACCCTACAGCTTTCAAGGGCTTAATTCAGCATGGAAGAG  500

seq1  ATATGCAAGATAAATAAAGAAGTCGGTAGGCAGTTGTTGAAGCAGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAAGATAAATAAAGAAGTCGGTAGGCAGTTGTTGAAGCAGGGGAC  550

seq1  ACTAGTGATGTACAGGGTGCTAAGAGTCAGGATATAAGTCATCATACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGATGTACAGGGTGCTAAGAGTCAGGATATAAGTCATCATACTCC  600

seq1  TTCAGGAAAAACCATGTCCTAAATGAAAGAACAGCAGTTGTAGTGGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAAAACCATGTCCTAAATGAAAGAACAGCAGTTGTAGTGGCCTC  650

seq1  CAGATTACAGGTTCTAGTACCACAGATGGTGTGGGTTCACAGAAAACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACAGGTTCTAGTACCACAGATGGTGTGGGTTCACAGAAAACATA  700

seq1  GTTGTGGGCATTCAATAGTGATGGAACCATGCTAGGTAAATTGAATACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGGCATTCAATAGTGATGGAACCATGCTAGGTAAATTGAATACCC  750

seq1  TTTCACACTTTGAGGAAGAAAAGATGCTAGAAGCATCTTACTTGGTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACTTTGAGGAAGAAAAGATGCTAGAAGCATCTTACTTGGTCAGT  800

seq1  TATGGCAACCATGACAGAGACTAGCTCCACTGATTGAGCTAGAAGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAACCATGACAGAGACTAGCTCCACTGATTGAGCTAGAAGAGAAA  850

seq1  GCCAATACAACTCTTTTCACATCAAATATTACAGAATTCCAG-TTAGAAG  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAATACAACTCTTTTCACATCAAATATTACAGAATTCCAGTTTAGAAG  900

seq1  ATTGCAAACAGAATGCAGTTATCATAGTCCACAAGACATTTGTCTTTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTGCAAACAGAATGCAGTTATCATAGTCCACAAGACATTTGTCTTT-AA  949

seq1  TAAGTCACTGGTGAACTGAGCAAAATAAATTGAACAATTACATCAATA-T  998
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TAAGTCACTGGTGAACTGAGCAAAATAAATTGAAC-ATTACATCAATATT  998

seq1  GGTCCATCCTTCTGAAATGTAATTATCTGAGG-ATAT-AGGTCCTCTGTT  1046
      |||||||||||||||||||||||||||||||| |||| ||||| ||||||
seq2  GGTCCATCCTTCTGAAATGTAATTATCTGAGGAATATAAGGTCTTCTGTT  1048

seq1  TCCAGGAACTGTTAGCATAACTCCAGTAAGTGTCAATCAAC--AAACACA  1094
      | |||||||||||||| ||||||   |||||||  ||||||  |||| ||
seq2  TTCAGGAACTGTTAGCTTAACTCAGTTAAGTGTTCATCAACCAAAACCCA  1098

seq1  T-GACACAGTCATATTGTTCAACCTCTCTACTAAAGTTCTC-CAAGGCCT  1142
      | ||||||||||||||||| |  ||||||||| ||| |||| ||||||| 
seq2  TGGACACAGTCATATTGTTTACTCTCTCTACTTAAGGTCTCTCAAGGCC-  1147

seq1  CTCCTCTATTTTACATAGCTAAA  1165
      || ||||| ||||||||||||||
seq2  CT-CTCTA-TTTACATAGCTAAA  1168

seq1: chr8_22813560_22814583
seq2: B6Ng01-008C19.g_68_1093 (reverse)

seq1  TTCTTAACAAATTTATTACTCATGTATATGAGGAATTATCAATATGTTCT  50
      |||||||| |||||||||||||||||||||| |||  ||| |||||||||
seq2  TTCTTAACCAATTTATTACTCATGTATATGA-GAAAGATCCATATGTTCT  49

seq1  ATATTTTG-AAGGTTTCTCATGGGTAATTTTTTTTTCTTGATGTCTGTAA  99
      |||||||| ||| ||||||||  |||| ||||||||||||||||||||||
seq2  ATATTTTGAAAGATTTCTCAT-AGTAA-TTTTTTTTCTTGATGTCTGTAA  97

seq1  CTCCATTTATCCCTGAACCTAGCATGGGGAACAGAGCTCAGG-AGTCACA  148
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  CTCCATTTATCCCTGAACCTAGCAT-GGGAACAGAGCTCAGGAAGTCACA  146

seq1  GGCAGATAAATTTTTAAATGAAAAAACTT-AACACTGGGTTGACTCTCAC  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCAGATAAATTTTTAAATGAAAAAACTTAAACACTGGGTTGACTCTCAC  196

seq1  TGTTACTTCTATTAATAAGACAG-AAAAGTTCTTAGAGTATCAAG-GGAC  245
      ||||||||||||||||||||||| ||||||||||||||||||||| | ||
seq2  TGTTACTTCTATTAATAAGACAGAAAAAGTTCTTAGAGTATCAAGAGAAC  246

seq1  AACTACATGAACCAAGCTGTTATAGACATGATTCCAGGCTCATCTTCAGT  295
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AACTACATGACCCAAGCTGTTATAGACATGATTCCAGACTCATCTTCAGT  296

seq1  CCTGCCTCAAGAGACACC-AAGCCTCCATCACAGGGTTTGAGCACTCACC  344
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGCCTCAAGAGACACCAAAGCCTCCATCACAGGGTTTGAGCACTCACC  346

seq1  TACATATTGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAG  396

seq1  CCTGGTCCTCTTCCTCTGGCTGCTCCCCAGTTTTAGTCTCTTCATCTGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTCTTCCTCTGGCTGCTCCCCAGTTTTAGTCTCTTCATCTGTG  446

seq1  TTTTTGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGGCAAGGGCAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGGCAAGGGCAGA  496

seq1  GAGGAGGACAAGTGTCTTCATGACTGGGAGTCACCTGGAAGATTAGTGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGACAAGTGTCTTCATGACTGGGAGTCACCTGGAAGATTAGTGAG  546

seq1  CAGGAGCTCAATGTGTGGAGAATGAGTAGCCAGCCTGCATTTATAGGGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTCAATGTGTGGAGAATGAGTAGCCAGCCTGCATTTATAGGGCA  596

seq1  GAGAAGCATCTCCACTGAGAGAAGGCACTCATTGATGGGAACTGGGAGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCATCTCCACTGAGAGAAGGCACTCATTGATGGGAACTGGGAGAG  646

seq1  TCTGTAACCCTCAAGTTCCGTCTTTTGTCCTCATGGCTTCCAACATGATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACCCTCAAGTTCCGTCTTTTGTCCTCATGGCTTCCAACATGATA  696

seq1  TTGCTCTGTGTGTTCAGTGCCTCCCACCCCTCCCACTGATAATGATGAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTGTGTTCAGTGCCTCCCACCCCTCCCACTGATAATGATGAAG  746

seq1  TAGGCCTTGCTATCTTACCCTGTTTCCCATCTGCTTGGGTATTTATCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTGCTATCTTACCCTGTTTCCCATCTGCTTGGGTATTTATCTCT  796

seq1  CAGTGGTCGGGGAAGAAAAGAGCTGTTCATTGCCTAATTTAATAAATAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCGGGGAAGAAAAGAGCTGTTCATTGCCTAATTTAATAAATAGA  846

seq1  TTAATCAAAGGATTATTGGCTTTTGAACTTGGAGCCTGGACCAGACCTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAAGGATTATTGGCTTTTGAACTTGGAGCCTGGACCAGACCTTG  896

seq1  ACCAGGTGAACTGGACAGTCAGTTCTTTGCATGATTTAGGGAAATCACCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGAACTGGACAGTCAGTTCTTTGCATGATTTAGGGAAATCACCC  946

seq1  TCAGGAAGGAAGATTTTGTGAATCTTTTCCTATGGGGCCACGAAACTAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGGAAGATTTTGTGAATCTTTTCCTATGGGGCCACGAAACTAAT  996

seq1  ATGGCCTTATGTCACCAGTGAATTGAATTC  1024
      ||||||||||||||||||||||||||||||
seq2  ATGGCCTTATGTCACCAGTGAATTGAATTC  1026