BAC Information

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BAC

Clone NameB6Ng01-008O01
Chromosome8 (Build37)
Map Location 92,516,908 - 92,676,666
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008O01.bB6Ng01-008O01.g
ACCDH844983DH844984
length1,101685
definitionDH844983|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O01, 5' end.DH844984|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,516,908 - 92,518,003)(92,675,982 - 92,676,666)
sequence
gaattctctaacatctattgatatttaccaaaggctacatctattgttct
gtacagatagaaatcagggtttgctagctgctttaacagatccacttcta
catttttttcaatagctttccacaatcagagctgcttccctgatatagag
tccatagtcagcagaggcaggcaaagtccccgatgttgacatgacatggc
tgtactctctgtagccacatcaaggcacaagttgcttgactttttaggtt
atcttgtccttctcttggagcatcagagacctcggcaatagatccaggca
tgggaatatcacagaggtaggtttgcctgtaagagaatcatgtgggcctg
gtactcatcaagtacattcatatgccattgtaggattacaggcagctgaa
tcctgtcttattgcaatcccttgaaataagaactgtagacttattccaat
cttggaactgtagactgcttcgtgtgtccaagaagaagagagaaaggata
ttaaagagcaatagcagttgttcatttttcatgtaacttcagttttgaca
tctgaatgaggtgataccactgcctggcccattggacatctggtctctaa
gaaatcaacaaattctccaggtccactcaggtctccctaactcctgattt
cttagacatagcattacagacaagggccagttctctactccactatgagc
tatgaatcttcagcaataattctagatgtttccatttgagggcccaaaac
tggcgatgtacatttcccagcttcctttgtagtaagcttgagttcaagtg
cctggcatctggtgctgaagtgtaaaatgaggccagctcgatgtctagaa
ctggcattgggtggaaccggccaaggatgacgccacatgtctacaatgca
cagaacaatctcacagcttaaaaatgacctgtcctctcatgctgtccagt
tgcccgccctgaagaaagctctgcacttaacatcttctgccagataagag
gagccttctggaagtccctactggggtcgatctccattgttgatatgaaa
ttgcttgaatttagttgcaccagatgtttttcccttttttaatgcaaaag
g
gaattcacagacacacagacacacagacacagacacacacagacacacac
atacagagagagagagacagacagacagtcagacagacagacagacagac
acagagacagaaatacagaaagagacagattgtttcttttgagccccata
attccagaaagccaacattgggggcggggtgcaggggtggaagcaacgtc
tctaaacacatttgaggacaaaggcccaaagccttagcaggtagagagca
caggtggctctgcacctgaacataagttgaagggttccaccagggcctgc
atttcattccatgaactttcccatgtgttccatgatctctgtctcgagta
gtgtttcttgcattccttaagccactcactatcactgccattgcacagat
gggaaaatcattgcagggttttaaaagatatagctaactagcctagagaa
cttgactaggttacatggtctctaggttttccaatttaaaatgttttcca
atttaaaagtccctgcatatgtctctgcagaggtgattctgtcaataaga
tgaggaatatgtgctgaaaaatatccttaatacataaaaagtattcaaga
tggttcatggataagagtgctcactgccaagcttaatgacatgagttcta
tcccagggatccacatgatgcgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92516908_92518003
seq2: B6Ng01-008O01.b_48_1148

seq1  GAATTCTCTAACATCTATTGATATTTACCAAAGGCTACATCTATTGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACATCTATTGATATTTACCAAAGGCTACATCTATTGTTCT  50

seq1  GTACAGATAGAAATCAGGGTTTGCTAGCTGCTTTAACAGATCCACTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATAGAAATCAGGGTTTGCTAGCTGCTTTAACAGATCCACTTCTA  100

seq1  CATTTTTTTCAATAGCTTTCCACAATCAGAGCTGCTTCCCTGATATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTCAATAGCTTTCCACAATCAGAGCTGCTTCCCTGATATAGAG  150

seq1  TCCATAGTCAGCAGAGGCAGGCAAAGTCCCCGATGTTGACATGACATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTCAGCAGAGGCAGGCAAAGTCCCCGATGTTGACATGACATGGC  200

seq1  TGTACTCTCTGTAGCCACATCAAGGCACAAGTTGCTTGACTTTTTAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTCTGTAGCCACATCAAGGCACAAGTTGCTTGACTTTTTAGGTT  250

seq1  ATCTTGTCCTTCTCTTGGAGCATCAGAGACCTCGGCAATAGATCCAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCCTTCTCTTGGAGCATCAGAGACCTCGGCAATAGATCCAGGCA  300

seq1  TGGGAATATCACAGAGGTAGGTTTGCCTGTAAGAGAATCATGTGGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATATCACAGAGGTAGGTTTGCCTGTAAGAGAATCATGTGGGCCTG  350

seq1  GTACTCATCAAGTACATTCATATGCCATTGTAGGATTACAGGCAGCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATCAAGTACATTCATATGCCATTGTAGGATTACAGGCAGCTGAA  400

seq1  TCCTGTCTTATTGCAATCCCTTGAAATAAGAACTGTAGACTTATTCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTATTGCAATCCCTTGAAATAAGAACTGTAGACTTATTCCAAT  450

seq1  CTTGGAACTGTAGACTGCTTCGTGTGTCCAAGAAGAAGAGAGAAAGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTGTAGACTGCTTCGTGTGTCCAAGAAGAAGAGAGAAAGGATA  500

seq1  TTAAAGAGCAATAGCAGTTGTTCATTTTTCATGTAACTTCAGTTTTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGCAATAGCAGTTGTTCATTTTTCATGTAACTTCAGTTTTGACA  550

seq1  TCTGAATGAGGTGATACCACTGCCTGGCCCATTGGACATCTGGTCTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGAGGTGATACCACTGCCTGGCCCATTGGACATCTGGTCTCTAA  600

seq1  GAAATCAACAAATTCTCCAGGTCCACTCAGGTCTCCCTAACTCCTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAACAAATTCTCCAGGTCCACTCAGGTCTCCCTAACTCCTGATTT  650

seq1  CTTAGACATAGCATTACAGACAAGGGCCAGTTCTCTACTCCACTATGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACATAGCATTACAGACAAGGGCCAGTTCTCTACTCCACTATGAGC  700

seq1  TATGAATCTTCAGCAATAATTCTAGATGTTTCCATTTGAGGGCCCAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTTCAGCAATAATTCTAGATGTTTCCATTTGAGGGCCCAAAAC  750

seq1  TGGCGATGTACATTTCCCAGCTTCCTTTGTAGTAAGCTTGAGTTCAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGATGTACATTTCCCAGCTTCCTTTGTAGTAAGCTTGAGTTCAAGTG  800

seq1  CCTGGCATCTGGTGCTGAAGTGTAAAATGAGGCCAGCTCGATGTCTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATCTGGTGCTGAAGTGTAAAATGAGGCCAGCTCGATGTCTAGAA  850

seq1  CTGGCATTTGGTGGAACCGGGCCAAGGATGACGCCACATGTCTACAATGC  900
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CTGGCATTGGGTGGAACC-GGCCAAGGATGACGCCACATGTCTACAATGC  899

seq1  ACAGAACAATCTCACAGC-TAAAAATGACCTGTCCTCTCATGCTG-CCAG  948
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  ACAGAACAATCTCACAGCTTAAAAATGACCTGTCCTCTCATGCTGTCCAG  949

seq1  -TGCCCAGCCTG-AGAAAGCTCTGCACTTAACATC-TCTGCCAGATAAGA  995
       |||||  |||| |||||||||||||||||||||| ||||||||||||||
seq2  TTGCCCGCCCTGAAGAAAGCTCTGCACTTAACATCTTCTGCCAGATAAGA  999

seq1  GGAGGCCTCTGGAAGTCACCTACT-GGGTCAGTCTCCAATGTTGATATGA  1044
      |||| | |||||||||| |||||| |||||  |||||| |||||||||||
seq2  GGAGCCTTCTGGAAGTC-CCTACTGGGGTCGATCTCCATTGTTGATATGA  1048

seq1  AATGGC-TGAATTTAAGTGGCACAAGATGTTTTTCCC-CTTTTAATGCAA  1092
      ||| || ||||||| ||| |||| |||||||||||||  |||||||||||
seq2  AATTGCTTGAATTT-AGTTGCACCAGATGTTTTTCCCTTTTTTAATGCAA  1097

seq1  AAGG  1096
      ||||
seq2  AAGG  1101

seq1: chr8_92675982_92676666
seq2: B6Ng01-008O01.g_66_750 (reverse)

seq1  CCCCCCCCCCCCCCGCATCATGTGGATCCCTGGGATAGAACTCATGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCGCATCATGTGGATCCCTGGGATAGAACTCATGTCAT  50

seq1  TAAGCTTGGCAGTGAGCACTCTTATCCATGAACCATCTTGAATACTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTGGCAGTGAGCACTCTTATCCATGAACCATCTTGAATACTTTTT  100

seq1  ATGTATTAAGGATATTTTTCAGCACATATTCCTCATCTTATTGACAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAAGGATATTTTTCAGCACATATTCCTCATCTTATTGACAGAAT  150

seq1  CACCTCTGCAGAGACATATGCAGGGACTTTTAAATTGGAAAACATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCAGAGACATATGCAGGGACTTTTAAATTGGAAAACATTTTAA  200

seq1  ATTGGAAAACCTAGAGACCATGTAACCTAGTCAAGTTCTCTAGGCTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAACCTAGAGACCATGTAACCTAGTCAAGTTCTCTAGGCTAGTT  250

seq1  AGCTATATCTTTTAAAACCCTGCAATGATTTTCCCATCTGTGCAATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATCTTTTAAAACCCTGCAATGATTTTCCCATCTGTGCAATGGCA  300

seq1  GTGATAGTGAGTGGCTTAAGGAATGCAAGAAACACTACTCGAGACAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGTGAGTGGCTTAAGGAATGCAAGAAACACTACTCGAGACAGAGA  350

seq1  TCATGGAACACATGGGAAAGTTCATGGAATGAAATGCAGGCCCTGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAACACATGGGAAAGTTCATGGAATGAAATGCAGGCCCTGGTGGA  400

seq1  ACCCTTCAACTTATGTTCAGGTGCAGAGCCACCTGTGCTCTCTACCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCAACTTATGTTCAGGTGCAGAGCCACCTGTGCTCTCTACCTGCT  450

seq1  AAGGCTTTGGGCCTTTGTCCTCAAATGTGTTTAGAGACGTTGCTTCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTGGGCCTTTGTCCTCAAATGTGTTTAGAGACGTTGCTTCCACC  500

seq1  CCTGCACCCCGCCCCCAATGTTGGCTTTCTGGAATTATGGGGCTCAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCCCGCCCCCAATGTTGGCTTTCTGGAATTATGGGGCTCAAAAG  550

seq1  AAACAATCTGTCTCTTTCTGTATTTCTGTCTCTGTGTCTGTCTGTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCTGTCTCTTTCTGTATTTCTGTCTCTGTGTCTGTCTGTCTGTC  600

seq1  TGTCTGACTGTCTGTCTGTCTCTCTCTCTCTGTATGTGTGTGTCTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACTGTCTGTCTGTCTCTCTCTCTCTGTATGTGTGTGTCTGTGTG  650

seq1  TGTCTGTGTCTGTGTGTCTGTGTGTCTGTGAATTC  685
      |||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTCTGTGTGTCTGTGTGTCTGTGAATTC  685