BAC Information

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BAC

Clone NameB6Ng01-009B13
Chromosome8 (Build37)
Map Location 78,283,925 - 78,502,656
singlet/doubletdoublet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B13.bB6Ng01-009B13.g
ACCDH845134DH845135
length874719
definitionDH845134|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B13, 5' end.DH845135|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,283,925 - 78,284,804)(78,502,095 - 78,502,656)
sequence
gaattccctccccctccccccccccatgccatgttctcgttgctttgtct
tcttcccccccccacacacacatgcacaataaccaagctgagaacattta
agtcggcatccacaataaccacaatgtatccacattgttatacttcctct
ctccagcatgcttcatctttaacaagaatggcacttactcaacagcaggt
atgctctgatgtgggtcaagacatgttgcttcatgggaaacccttgtgtg
ttgttcccacagattcagaccacatgactattctactctttattcagagc
actgatagtacttctttggccatccctaagaggcaccatgaaagagtcta
tgttagtattcagccacagaattcacaatcacatgcatatcctaaatgtc
ttccccccttttttgtttttggcctggtattatcatcatacttcaaattc
tgtcactatgttttttgttttttgttttttttaagttttatcttaacatg
tttattttaattttatccctacctacataacttttactcttgacttgtaa
ttacagattttaaatttattattattattattattttattaattttattt
tatttttagtttgaaaacacatacagaggaacacatgtacaccccatgtc
tatctgtttttccgttctggcttctggtggtattagctgacaagattatt
gagtaagtcttaaacgtctatgataagcttatgtgtttctttgttagatt
cctagtcagttgaaaagggactagaagaatacagacaagaacaatggggg
caatttatggatacatatcactttaagtagactggcatgaacaaagacag
aataaagcttttgattaaacgatg
gaattctatatgtccttcaaagaagacctaatactaatattcttcaaacc
attccacaaaatagaaacagaagaactacccaattcattctatgaagcca
cagttatgctgcatgttttcccttgcagatggaaaggtttctgtctagtc
agggacctgtcacaatttcctttcacagaggatttcataagttatttttt
tctacttctatcatgtttaatgttccaaatagattttaaaagctggttga
gtgcatattacttttagcttcagaagatattgtgtatatttaagaggcat
ttaactattataaattattttgatgacttaaaaaaatgtcaatactgaga
tgttcattttaaaataaattttatttgttcaattaaaataaataaaaaat
taaaacagtcacattttaagtaaaatgttaagtgcattttaattttgttg
ctaagctggcagataaggaagacagtgaagtcaataccaatgtgaaatca
gtagcatcagtaggtgatcgatgggtaaagtcagcatttcagctcaggtt
tttctgggaaacactgggtatctgaattatggtctatgaggggaacatgg
acaggcggttgggcacaggtgagaccatcccagaggtgacatctcagaag
atcatatcatttgtgaaaacaaacaaacaaacaaaaaaggtgaggaggtg
ggataggatgggaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78283925_78284804
seq2: B6Ng01-009B13.b_47_920

seq1  GAATTCCCTCCCCCTCCCCCCCCCCATGCCATGTTCTCGTTGCTTTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCCCCTCCCCCCCCCCATGCCATGTTCTCGTTGCTTTGTCT  50

seq1  TCTTCCCCCCCCCACACACACATGCACAATAACCAAGCTGAGAACATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCCCCCCACACACACATGCACAATAACCAAGCTGAGAACATTTA  100

seq1  AGTCGGCATCCACAATAACCACAATGTATCCACATTGTTATACTTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGCATCCACAATAACCACAATGTATCCACATTGTTATACTTCCTCT  150

seq1  CTCCAGCATGCTTCATCTTTAACAAGAATGGCACTTACTCAACAGCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATGCTTCATCTTTAACAAGAATGGCACTTACTCAACAGCAGGT  200

seq1  ATGCTCTGATGTGGGTCAAGACATGTTGCTTCATGGGAAACCCTTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGATGTGGGTCAAGACATGTTGCTTCATGGGAAACCCTTGTGTG  250

seq1  TTGTTCCCACAGATTCAGACCACATGACTATTCTACTCTTTATTCAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCACAGATTCAGACCACATGACTATTCTACTCTTTATTCAGAGC  300

seq1  ACTGATAGTACTTCTTTGGCCATCCCTAAGAGGCACCATGAAAGAGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAGTACTTCTTTGGCCATCCCTAAGAGGCACCATGAAAGAGTCTA  350

seq1  TGTTAGTATTCAGCCACAGAATTCACAATCACATGCATATCCTAAATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTATTCAGCCACAGAATTCACAATCACATGCATATCCTAAATGTC  400

seq1  TTCCCCCCTTTTTTGTTTTTGGCCTGGTATTATCATCATACTTCAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCTTTTTTGTTTTTGGCCTGGTATTATCATCATACTTCAAATTC  450

seq1  TGTCACTATGTTTTTTGTTTTTTGTTTTTTTTAAGTTTTATCTTAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTATGTTTTTTGTTTTTTGTTTTTTTTAAGTTTTATCTTAACATG  500

seq1  TTTATTTTAATTTTATCCCTACCTACATAACTTTTACTCTTGACTTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAATTTTATCCCTACCTACATAACTTTTACTCTTGACTTGTAA  550

seq1  TTACAGATTTTAAATTTATTATTATTATTATTATTTTATTAATTTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTTTAAATTTATTATTATTATTATTATTTTATTAATTTTATTT  600

seq1  TATTTTTAGTTTGAAAACACATACAGAGGAACACATGTACACCCCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGTTTGAAAACACATACAGAGGAACACATGTACACCCCATGTC  650

seq1  TATCTGTTTTTCCGTTCTGGCTTCTGGTGGTATTTAGCTGACAAGATTAT  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATCTGTTTTTCCGTTCTGGCTTCTGGTGGTA-TTAGCTGACAAGATTAT  699

seq1  TGAGTAAGTCTTAAACGTCTATGGATAGCTTTATGTGTTTCTTGTTTAGA  750
      |||||||||||||||||||||| ||||   |||||||||||||  |||||
seq2  TGAGTAAGTCTTAAACGTCTAT-GATAAGCTTATGTGTTTCTTTGTTAGA  748

seq1  TTCCTAGTCAAGTTGAGAAGGCACTAGAAGATTACAGACAAAGAACAAT-  799
      ||||||||| |||||| |||| ||||||||| ||||||| ||||||||| 
seq2  TTCCTAGTC-AGTTGAAAAGGGACTAGAAGAATACAGAC-AAGAACAATG  796

seq1  GGTGCAATTTATGAATACATATCACTTTAGTTAGACTTGCATGAGCAAAA  849
      || |||||||||| |||||||||||||||  |||||| |||||| | |||
seq2  GGGGCAATTTATGGATACATATCACTTTAAGTAGACTGGCATGAAC-AAA  845

seq1  GACAGAATAAAGGCATTTGATTAAACAGATG  880
      ||||||||||| || ||||||||||| ||||
seq2  GACAGAATAAA-GCTTTTGATTAAAC-GATG  874

seq1: chr8_78502095_78502656
seq2: B6Ng01-009B13.g_223_784 (reverse)

seq1  TCCTCTTCCCATCCTATCCCACCTCCTCACCTTTTTTGTTTGTTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCCATCCTATCCCACCTCCTCACCTTTTTTGTTTGTTTGTTTG  50

seq1  TTTTCACAAATGATATGATCTTCTGAGATGTCACCTCTGGGATGGTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAATGATATGATCTTCTGAGATGTCACCTCTGGGATGGTCTCA  100

seq1  CCTGTGCCCAACCGCCTGTCCATGTTCCCCTCATAGACCATAATTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCAACCGCCTGTCCATGTTCCCCTCATAGACCATAATTCAGAT  150

seq1  ACCCAGTGTTTCCCAGAAAAACCTGAGCTGAAATGCTGACTTTACCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGTTTCCCAGAAAAACCTGAGCTGAAATGCTGACTTTACCCATC  200

seq1  GATCACCTACTGATGCTACTGATTTCACATTGGTATTGACTTCACTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCTACTGATGCTACTGATTTCACATTGGTATTGACTTCACTGTCT  250

seq1  TCCTTATCTGCCAGCTTAGCAACAAAATTAAAATGCACTTAACATTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCTGCCAGCTTAGCAACAAAATTAAAATGCACTTAACATTTTAC  300

seq1  TTAAAATGTGACTGTTTTAATTTTTTATTTATTTTAATTGAACAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTGACTGTTTTAATTTTTTATTTATTTTAATTGAACAAATAAA  350

seq1  ATTTATTTTAAAATGAACATCTCAGTATTGACATTTTTTTAAGTCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTAAAATGAACATCTCAGTATTGACATTTTTTTAAGTCATCAA  400

seq1  AATAATTTATAATAGTTAAATGCCTCTTAAATATACACAATATCTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTATAATAGTTAAATGCCTCTTAAATATACACAATATCTTCTGA  450

seq1  AGCTAAAAGTAATATGCACTCAACCAGCTTTTAAAATCTATTTGGAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAAGTAATATGCACTCAACCAGCTTTTAAAATCTATTTGGAACAT  500

seq1  TAAACATGATAGAAGTAGAAAAAAATAACTTATGAAATCCTCTGTGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGATAGAAGTAGAAAAAAATAACTTATGAAATCCTCTGTGAAAG  550

seq1  GAAATTGTGACA  562
      ||||||||||||
seq2  GAAATTGTGACA  562