BAC Information

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BAC

Clone NameB6Ng01-010D04
Chromosome8 (Build37)
Map Location 105,853,215 - 106,006,331
singlet/doubletdoublet
Overlap gene1600027J07Rik
Upstream geneCdh11, EG667618, LOC100041368
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010D04.bB6Ng01-010D04.g
ACCDH845933DH845934
length1,076777
definitionDH845933|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D04, 5' end.DH845934|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,853,215 - 105,854,320)(106,005,555 - 106,006,331)
sequence
gaattcaagaaggtgactagaggccaagtcatttggaatatactctcaga
atgacacatagctgagcagcaatcctgctggatgccttaccaggacagga
gagatgaggttttatgaaaaataagaaagaaaatctaagttccccaagtc
aaagtatcatacaaatttccaagcaggctggagaggccaatgggtagaac
catcttcatcaacttctagacacaaagccttctggtcgtacagtatggag
gaaattctacttttcacttcctaccccatttactcatcaagtttcctttg
taggattctttggaagattaaattttcatcaagaacgtaactcatgctct
gtgcactccaaagttatgcttgctcgctcaacccagatctccaaggggga
aagcaaacaagcttgccaacagtaggtgagccatccatctttactgaagc
cggtaatagagatataagaaggatgagatgttttctctgttctcaggaaa
aaactccgccgcacaggaagaaaacacagcaggagggaaatgaagaaaaa
ccaagacacacagagagcaatgttggatgtgaattgtgagatagacaaac
gggggcataccccaaggactgaggccgatcttaaaagagacagaacacca
gctagactttttaaaaagggaaagaactacaggaagagaaacttatacat
ccgcatccatgttttattaaagagctagctgcctaaatctaaagaaggta
ggagcagacaaactttaaacatcttgtcattcagatttacaggccttatc
aattatacaaatatttttactcttcatgtgtctcctttttctcttccatg
gactgaattgcattgcttcacagatcccgggttgttgctctaacacagag
agttgactcaatttgaagaaaccctcttggcggggggtgtattgagttta
agtaaggaagaaggtgagctctgttcaggaactcatattatataaagact
gagaatgcagtgtcccagaaacagacaccagtgagatgtacggcatatgc
agaaaagaccctttacctgcaagcat
gaattcttcttgttccctgcctgtgacacttgacacggcttgcgacatat
ggaaatcagcttctgcctgcctgcagaaatagttttcagttttcaggccc
agccagtgttggaatgcagacaggtctctctctccggccctggagagtag
gctgtgttcacaacaaagctctcaagtaacttgtcaaaatcaggaaaggg
aggagagtaaaggaccacctggggcttgtggcctaaggaagcagagaatc
cacacaaggtgcatgctgggggaagatggagtctgctaccctttcagcct
ttccattactgcctgcaggacgcctcactaattagactgcctccctgtgg
cctgccacattcatttgatctatctgttctgcctgggcaaaatttaagct
gcatgaccttggactagtgacctacctctctgaaccaaatggcatcacct
gctaaaagggagagggtgggggccagaataagatcttttgagttagtgga
gaagtgagagcgaagggatattacaagggaagaaaagccatttcgtctgt
cccttgtttcacttgtgtctgtacagagacttcctttaacaaaagacaga
ttagtatgagaaaaaaataaatagatttttaaatataagactgtgttcta
tatgcatggaaaataactaagtgaaataagtgaatctctagaatagatct
caaggagcaatcttagacttcaggcttgaatacctccttctttgaagcat
gctcgggtgtgtgtgtgtgtgtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105853215_105854320
seq2: B6Ng01-010D04.b_48_1123

seq1  GAATTCAAGAAGGTGACTAGAGGCCAAGTCATTTGGAATATACTCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGGTGACTAGAGGCCAAGTCATTTGGAATATACTCTCAGA  50

seq1  ATGACACATAGCTGAGCAGCAATCCTGCTGGATGCCTTACCAGGACAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACATAGCTGAGCAGCAATCCTGCTGGATGCCTTACCAGGACAGGA  100

seq1  GAGATGAGGTTTTATGAAAAATAAGAAAGAAAATCTAAGTTCCCCAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGTTTTATGAAAAATAAGAAAGAAAATCTAAGTTCCCCAAGTC  150

seq1  AAAGTATCATACAAATTTCCAAGCAGGCTGGAGAGGCCAATGGGTAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCATACAAATTTCCAAGCAGGCTGGAGAGGCCAATGGGTAGAAC  200

seq1  CATCTTCATCAACTTCTAGACACAAAGCCTTCTGGTCGTACAGTATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCATCAACTTCTAGACACAAAGCCTTCTGGTCGTACAGTATGGAG  250

seq1  GAAATTCTACTTTTCACTTCCTACCCCATTTACTCATCAAGTTTCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTACTTTTCACTTCCTACCCCATTTACTCATCAAGTTTCCTTTG  300

seq1  TAGGATTCTTTGGAAGATTAAATTTTCATCAAGAACGTAACTCATGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTCTTTGGAAGATTAAATTTTCATCAAGAACGTAACTCATGCTCT  350

seq1  GTGCACTCCAAAGTTATGCTTGCTCGCTCAACCCAGATCTCCAAGGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTCCAAAGTTATGCTTGCTCGCTCAACCCAGATCTCCAAGGGGGA  400

seq1  AAGCAAACAAGCTTGCCAACAGTAGGTGAGCCATCCATCTTTACTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAGCTTGCCAACAGTAGGTGAGCCATCCATCTTTACTGAAGC  450

seq1  CGGTAATAGAGATATAAGAAGGATGAGATGTTTTCTCTGTTCTCAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAATAGAGATATAAGAAGGATGAGATGTTTTCTCTGTTCTCAGGAAA  500

seq1  AAACTCCGCCGCACAGGAAGAAAACACAGCAGGAGGGAAATGAAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCGCCGCACAGGAAGAAAACACAGCAGGAGGGAAATGAAGAAAAA  550

seq1  CCAAGACACACAGAGAGCAATGTTGGATGTGAATTGTGAGATAGACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACACACAGAGAGCAATGTTGGATGTGAATTGTGAGATAGACAAAC  600

seq1  GGGGGCATACCCCAAGGACTGAGGCCGATCTTAAAAGAGACAGAACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATACCCCAAGGACTGAGGCCGATCTTAAAAGAGACAGAACACCA  650

seq1  GCTAGACTTTTTAAAAAGGGAAAGAACTACAGGAAGAGAAACTTATACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTTTTTAAAAAGGGAAAGAACTACAGGAAGAGAAACTTATACAT  700

seq1  CCGCATCCATGTTTTATTAAAGAGCTAGCTGCCTAAATCTAAAGAAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATCCATGTTTTATTAAAGAGCTAGCTGCCTAAATCTAAAGAAGGTA  750

seq1  GGAGCAGACAAACTTTAAACATCTTGTCATTCAGATTTACAGGCCTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGACAAACTTTAAACATCTTGTCATTCAGATTTACAGGCCTTATC  800

seq1  AATTATACAAATATTTTTACTCTTCATGTGTCTCCTTTTTCTCTTCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACAAATATTTTTACTCTTCATGTGTCTCCTTTTTCTCTTCCATG  850

seq1  GACTGAATTGCATTGCTTCACAGATCCCGGGTTGTTGCTCTAACACAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATTGCATTGCTTCACAGATCCCGGGTTGTTGCTCTAACACAGAG  900

seq1  AGTTGACTCAATTTGAAGAAAACCCTCTTGGCGGGGGGGTGTAATTGAGT  950
      |||||||||||||||||| ||||||||||||| ||||||||| |||||||
seq2  AGTTGACTCAATTTGAAG-AAACCCTCTTGGC-GGGGGGTGT-ATTGAGT  947

seq1  TTAAGTAAGGGAAGAAGGGTGAAGCTCTGTTCCAAGGAGACTCATATTTA  1000
      |||||||| ||||||| |||| ||||||||||  |||| ||||||| |||
seq2  TTAAGTAA-GGAAGAA-GGTG-AGCTCTGTTC--AGGA-ACTCATA-TTA  990

seq1  TATAAAGACAGAGAAATGCAAGTGTTCCCCAGGAAAACCAAGAACACCCA  1050
      ||||||||| ||| ||||| |||||  |||||  ||||  || ||| |||
seq2  TATAAAGACTGAG-AATGC-AGTGT--CCCAG--AAAC--AG-ACA-CCA  1030

seq1  GTGAGGATGTACGGGGCTATATGCAAGAAAGAGAACCCCTTTACCCTGCC  1100
      |||| |||||||||    |||||||  |||||    ||||||| |||| |
seq2  GTGA-GATGTACGG---CATATGCAGAAAAGA----CCCTTTA-CCTG-C  1070

seq1  AAGCAT  1106
      ||||||
seq2  AAGCAT  1076

seq1: chr8_106005555_106006331
seq2: B6Ng01-010D04.g_64_840 (reverse)

seq1  CCCCCACACACACACACACACCCGAGCATGCTTCAAAGAAGGAGGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACACACACACACACCCGAGCATGCTTCAAAGAAGGAGGTATTC  50

seq1  AAGCCTGAAGTCTAAGATTGCTCCTTGAGATCTATTCTAGAGATTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAAGTCTAAGATTGCTCCTTGAGATCTATTCTAGAGATTCACTT  100

seq1  ATTTCACTTAGTTATTTTCCATGCATATAGAACACAGTCTTATATTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTTAGTTATTTTCCATGCATATAGAACACAGTCTTATATTTAAA  150

seq1  AATCTATTTATTTTTTTCTCATACTAATCTGTCTTTTGTTAAAGGAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTATTTTTTTCTCATACTAATCTGTCTTTTGTTAAAGGAAGTC  200

seq1  TCTGTACAGACACAAGTGAAACAAGGGACAGACGAAATGGCTTTTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAGACACAAGTGAAACAAGGGACAGACGAAATGGCTTTTCTTCC  250

seq1  CTTGTAATATCCCTTCGCTCTCACTTCTCCACTAACTCAAAAGATCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATATCCCTTCGCTCTCACTTCTCCACTAACTCAAAAGATCTTAT  300

seq1  TCTGGCCCCCACCCTCTCCCTTTTAGCAGGTGATGCCATTTGGTTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCCCACCCTCTCCCTTTTAGCAGGTGATGCCATTTGGTTCAGAG  350

seq1  AGGTAGGTCACTAGTCCAAGGTCATGCAGCTTAAATTTTGCCCAGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTCACTAGTCCAAGGTCATGCAGCTTAAATTTTGCCCAGGCAGA  400

seq1  ACAGATAGATCAAATGAATGTGGCAGGCCACAGGGAGGCAGTCTAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGATCAAATGAATGTGGCAGGCCACAGGGAGGCAGTCTAATTAG  450

seq1  TGAGGCGTCCTGCAGGCAGTAATGGAAAGGCTGAAAGGGTAGCAGACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCGTCCTGCAGGCAGTAATGGAAAGGCTGAAAGGGTAGCAGACTCC  500

seq1  ATCTTCCCCCAGCATGCACCTTGTGTGGATTCTCTGCTTCCTTAGGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCCCAGCATGCACCTTGTGTGGATTCTCTGCTTCCTTAGGCCAC  550

seq1  AAGCCCCAGGTGGTCCTTTACTCTCCTCCCTTTCCTGATTTTGACAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAGGTGGTCCTTTACTCTCCTCCCTTTCCTGATTTTGACAAGTT  600

seq1  ACTTGAGAGCTTTGTTGTGAACACAGCCTACTCTCCAGGGCCGGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGCTTTGTTGTGAACACAGCCTACTCTCCAGGGCCGGAGAGAG  650

seq1  AGACCTGTCTGCATTCCAACACTGGCTGGGCCTGAAAACTGAAAACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTCTGCATTCCAACACTGGCTGGGCCTGAAAACTGAAAACTATT  700

seq1  TCTGCAGGCAGGCAGAAGCTGATTTCCATATGTCGCAAGCCGTGTCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGCAGGCAGAAGCTGATTTCCATATGTCGCAAGCCGTGTCAAGT  750

seq1  GTCACAGGCAGGGAACAAGAAGAATTC  777
      |||||||||||||||||||||||||||
seq2  GTCACAGGCAGGGAACAAGAAGAATTC  777