BAC Information

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BAC

Clone NameB6Ng01-010K10
Chromosome8 (Build37)
Map Location 52,200,989 - 52,335,650
singlet/doubletdoublet
Overlap geneLOC667517
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC623872, LOC100040220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010K10.bB6Ng01-010K10.g
ACCDH846259DH846260
length1,1761,076
definitionDH846259|Mus musculus domesticus DNA, BAC clone: B6Ng01-010K10, 5' end.DH846260|Mus musculus domesticus DNA, BAC clone: B6Ng01-010K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,334,456 - 52,335,650)(52,200,989 - 52,202,068)
sequence
gaattctattacaagtgggaaaatatctacctagttcactttaaagacgt
aacaagggctctcccaaggataaaaaggagaatttcatctattctacatt
atgtggctttcttcctatttggtctctagttatgaggtgttgaaaagtgc
atcttctgataaagctgccatctgcagggttccttagactaaccactaac
aaatgcaaactgacacttctgaaatggattagtgtgcatatcaacaatct
tctaatggctttcatcctttctatcacatttgaccttgccttttggaggc
atttgataaatgattaattattcattctagaacttgatccttcaacaact
aaactacttcccggaaacaaatatggatgtgtattagagcatcagaataa
atcaattattcattgatcctttgccttgtatttgcctagtgtgtgtcaat
ctctaagttaggcagactgtgaggaaaaaagaaaaaggaatacatgctct
ctgaccaattttatttccagaatgaaacagatactaacagaaggcttggg
ctgagttattatgattagctacttttttgtgtctatcctcagtaatttcc
attcaacctgtgaatgtgtgttcttggtgaagaacgaagattaaaaatgt
agcagcgtaatacagcctcaaatatcaaaatatgtgagtacatgaaaatg
aacatgaaaggaaaactcattagtaattaaataaaaataaaactgcactg
aaagtggaaatccattctcatcactgttaaaatataacaaaacagcagaa
atacacaaaatcccaaatgtgagtatttcaaggtgtttcacgtggccata
aaatatgatatatatatgcatatattaaacaagtatacatgtgattcatg
tgtaaatatgtatatacatatatatatacatatataaagaaacatatata
tatatataaatttttttaaatatattttaacccttacacacacacgcaca
cacactccacacacactcacacccacttaattccaatgggaaaggaggga
aactggaggaatgaaaatgagaacctgaagaatgtctaagtaaaaataaa
gtttgggactgaagaagatgaacttttttttaaaccagggtgaaaaaatg
gcaggaccctcaatttgtattcctga
gaattctagtttttgagcagagtctccaaagttcagaccatcaaaatagc
tttccacattttctaatctacagtggtaagtgctcacttgggggaagagt
gatttgcctttatgtcttctttccatataattcttcctaacatcccttcg
ttttcttcacattgcaactgtagattcaaataagttctcactactaagat
ttcagcataaaaaataggacccattaaaaaggtttaaagaccttcccttg
cttctagccttgcattctttaatgcctgcttacctaggagtaaaagcttt
ccatagttttacctagctaatttttctctcttcatgatagagtaattttc
ccaagcacagtgtgacattaaacaccctccaattactccagcaattctgc
ttctccttggtgctgcttccaccaccccaacccttttgcaaacactaagg
gtgttttcaggagttctattttctctctgaacctcagactatgctctccc
tgtgccactatttaatttaatattgtttaatttaacacagattataggaa
cctttcctaagtgcttttagccagggcttctcaacacctgcaatactatg
aatttgaactggaaatttttatgtgtggttggtgaggctttcctgggatg
tatgtggtttgtatgactttacccagtgggtattcttgtaggaactacaa
ctttgaagtatggttattgaatgggatcaaactttgacaagtaaattata
cccttttgacatatgatttatgctgagctatcaagaaacagtagcaggaa
ctctttgatcatccactattttagtacaatcagggcacacatttcccttt
ctgcaaagaaaatttccatatattaaaattattaattttaaaagatgtta
ggttatttttacagtcaaaaagtaaaaagcttttatctacaaagatgtaa
ctttgtttcccagtagtagtttctactggtgctctctctttctgtctctg
cttccatgtcatctgtctatctttctgctatgatctatgtccatgacctg
tgcacctatgtacctatgtatttacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52334456_52335650
seq2: B6Ng01-010K10.b_45_1220 (reverse)

seq1  TCAGAGAATACAAAATTGAGAGTCCTGCCATTTTTTTCAACCTGGTTTTA  50
      |||| |||||| |||||||| ||||||||| |||||||| ||||||||  
seq2  TCAG-GAATAC-AAATTGAGGGTCCTGCCA-TTTTTTCACCCTGGTTT--  45

seq1  AACAAAAAGTTCATCATCTTCAGTCACAATACTTAATTTTCTACTTTAAG  100
      || |||||||||||| ||||||||| ||| |||| ||||| |||||  ||
seq2  AAAAAAAAGTTCATCTTCTTCAGTCCCAA-ACTTTATTTT-TACTT--AG  91

seq1  ACATTCTTCAGG-TCTCATTTTTCATTCCTCCAGTTTTCACTCCCTTTCC  149
      |||||||||||| ||||| ||||||||||||||| |||| || |||||||
seq2  ACATTCTTCAGGTTCTCA-TTTTCATTCCTCCAG-TTTCCCT-CCTTTCC  138

seq1  ATTTGGAATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  199
        ||||||||| ||| ||||| |||||||||   | ||||||||| ||||
seq2  CATTGGAATTAAGTGGGTGTGAGTGTGTGTG---GAGTGTGTGTGCGTGT  185

seq1  GTGTGTATGTGTTTATAAATATATTTATATAAAATTTATATATATATATA  249
      ||||||| | |||   ||||||||||| | ||||||||||||||||||||
seq2  GTGTGTAAGGGTT--AAAATATATTTA-AAAAAATTTATATATATATATA  232

seq1  TGTTTCTTTATATATGTATATTATATATGTATTATACATATTTACACATG  299
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  TGTTTCTTTATATATGTATA-TATATATGTA-TATACATATTTACACATG  280

seq1  AATCACATGTATACTTGTTTAATATATGCATATATATATCATATTTTATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATGTATACTTGTTTAATATATGCATATATATATCATATTTTATG  330

seq1  GCCACCTGAAACACCTTGAAATACTCACATTTGGGATTTTGTGTATTTCT  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTGAAACACCTTGAAATACTCACATTTGGGATTTTGTGTATTTCT  380

seq1  GCTGTTTTGTTATATTTTAACAGTGATGAGAATGGATTTCCACTTTCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTGTTATATTTTAACAGTGATGAGAATGGATTTCCACTTTCAGT  430

seq1  GCAGTTTTATTTTTATTTAATTACTAATGAGTTTTCCTTTCATGTTCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTATTTTTATTTAATTACTAATGAGTTTTCCTTTCATGTTCATT  480

seq1  TTCATGTACTCACATATTTTGATATTTGAGGCTGTATTACGCTGCTACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTACTCACATATTTTGATATTTGAGGCTGTATTACGCTGCTACAT  530

seq1  TTTTAATCTTCGTTCTTCACCAAGAACACACATTCACAGGTTGAATGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTTCGTTCTTCACCAAGAACACACATTCACAGGTTGAATGGAA  580

seq1  ATTACTGAGGATAGACACAAAAAAGTAGCTAATCATAATAACTCAGCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGAGGATAGACACAAAAAAGTAGCTAATCATAATAACTCAGCCCA  630

seq1  AGCCTTCTGTTAGTATCTGTTTCATTCTGGAAATAAAATTGGTCAGAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTGTTAGTATCTGTTTCATTCTGGAAATAAAATTGGTCAGAGAG  680

seq1  CATGTATTCCTTTTTCTTTTTTCCTCACAGTCTGCCTAACTTAGAGATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTCCTTTTTCTTTTTTCCTCACAGTCTGCCTAACTTAGAGATTG  730

seq1  ACACACACTAGGCAAATACAAGGCAAAGGATCAATGAATAATTGATTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTAGGCAAATACAAGGCAAAGGATCAATGAATAATTGATTTAT  780

seq1  TCTGATGCTCTAATACACATCCATATTTGTTTCCGGGAAGTAGTTTAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCTCTAATACACATCCATATTTGTTTCCGGGAAGTAGTTTAGTT  830

seq1  GTTGAAGGATCAAGTTCTAGAATGAATAATTAATCATTTATCAAATGCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGGATCAAGTTCTAGAATGAATAATTAATCATTTATCAAATGCCT  880

seq1  CCAAAAGGCAAGGTCAAATGTGATAGAAAGGATGAAAGCCATTAGAAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGCAAGGTCAAATGTGATAGAAAGGATGAAAGCCATTAGAAGAT  930

seq1  TGTTGATATGCACACTAATCCATTTCAGAAGTGTCAGTTTGCATTTGTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATATGCACACTAATCCATTTCAGAAGTGTCAGTTTGCATTTGTTA  980

seq1  GTGGTTAGTCTAAGGAACCCTGCAGATGGCAGCTTTATCAGAAGATGCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGTCTAAGGAACCCTGCAGATGGCAGCTTTATCAGAAGATGCAC  1030

seq1  TTTTCAACACCTCATAACTAGAGACCAAATAGGAAGAAAGCCACATAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACACCTCATAACTAGAGACCAAATAGGAAGAAAGCCACATAATG  1080

seq1  TAGAATAGATGAAATTCTCCTTTTTATCCTTGGGAGAGCCCTTGTTACGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGATGAAATTCTCCTTTTTATCCTTGGGAGAGCCCTTGTTACGT  1130

seq1  CTTTAAAGTGAACTAGGTAGATATTTTCCCACTTGTAATAGAATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTGAACTAGGTAGATATTTTCCCACTTGTAATAGAATTC  1176

seq1: chr8_52200989_52202068
seq2: B6Ng01-010K10.g_66_1141

seq1  GAATTCTAGTTTTTGAGCAGAGTCTCCAAAGTTCAGACCATCAAAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTTTTGAGCAGAGTCTCCAAAGTTCAGACCATCAAAATAGC  50

seq1  TTTCCACATTTTCTAATCTACAGTGGTAAGTGCTCACTTGGGGGAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACATTTTCTAATCTACAGTGGTAAGTGCTCACTTGGGGGAAGAGT  100

seq1  GATTTGCCTTTATGTCTTCTTTCCATATAATTCTTCCTAACATCCCTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTTTATGTCTTCTTTCCATATAATTCTTCCTAACATCCCTTCG  150

seq1  TTTTCTTCACATTGCAACTGTAGATTCAAATAAGTTCTCACTACTAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCACATTGCAACTGTAGATTCAAATAAGTTCTCACTACTAAGAT  200

seq1  TTCAGCATAAAAAATAGGACCCATTAAAAAGGTTTAAAGACCTTCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATAAAAAATAGGACCCATTAAAAAGGTTTAAAGACCTTCCCTTG  250

seq1  CTTCTAGCCTTGCATTCTTTAATGCCTGCTTACCTAGGAGTAAAAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGCCTTGCATTCTTTAATGCCTGCTTACCTAGGAGTAAAAGCTTT  300

seq1  CCATAGTTTTACCTAGCTAATTTTTCTCTCTTCATGATAGAGTAATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTTTACCTAGCTAATTTTTCTCTCTTCATGATAGAGTAATTTTC  350

seq1  CCAAGCACAGTGTGACATTAAACACCCTCCAATTACTCCAGCAATTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACAGTGTGACATTAAACACCCTCCAATTACTCCAGCAATTCTGC  400

seq1  TTCTCCTTGGTGCTGCTTCCACCACCCCAACCCTTTTGCAAACACTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGGTGCTGCTTCCACCACCCCAACCCTTTTGCAAACACTAAGG  450

seq1  GTGTTTTCAGGAGTTCTATTTTCTCTCTGAACCTCAGACTATGCTCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCAGGAGTTCTATTTTCTCTCTGAACCTCAGACTATGCTCTCCC  500

seq1  TGTGCCACTATTTAATTTAATATTGTTTAATTTAACACAGATTATAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACTATTTAATTTAATATTGTTTAATTTAACACAGATTATAGGAA  550

seq1  CCTTTCCTAAGTGCTTTTAGCCAGGGCTTCTCAACACCTGCAATACTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTAAGTGCTTTTAGCCAGGGCTTCTCAACACCTGCAATACTATG  600

seq1  AATTTGAACTGGAAATTTTTATGTGTGGTTGGTGAGGCTTTCCTGGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAACTGGAAATTTTTATGTGTGGTTGGTGAGGCTTTCCTGGGATG  650

seq1  TATGTGGTTTGTATGACTTTACCCAGTGGGTATTCTTGTAGGAACTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTTTGTATGACTTTACCCAGTGGGTATTCTTGTAGGAACTACAA  700

seq1  CTTTGAAGTATGGTTATTGAATGGGATCAAACTTTGACAAGTAAATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGTATGGTTATTGAATGGGATCAAACTTTGACAAGTAAATTATA  750

seq1  CCCTTTTGACATATGATTTATGCTGAGCTATCAAGAAACAGTAGCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGACATATGATTTATGCTGAGCTATCAAGAAACAGTAGCAGGAA  800

seq1  CTCTTTGATCATCCACTATTTTAGTACAATCAGGGCACACATTTCCC-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTTTGATCATCCACTATTTTAGTACAATCAGGGCACACATTTCCCTTT  850

seq1  CTGCAAAGAAAATTTCCATATATTAAAATTATTAATTTTAAAAGATGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGAAAATTTCCATATATTAAAATTATTAATTTTAAAAGATGTTA  900

seq1  GGTTATTTTTACAGTCAAAAAAGTAAAAAGCTTTTATCTACAAAGATGTA  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTTATTTTTACAGTC-AAAAAGTAAAAAGCTTTTATCTACAAAGATGTA  949

seq1  ACTTTGTTTCCCAGTAGTAGTTTCTACT-GTGCTCTCTCTTTCTGTCTCT  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTTTGTTTCCCAGTAGTAGTTTCTACTGGTGCTCTCTCTTTCTGTCTCT  999

seq1  GCTTCCATGTCATCTGTCTATCTTTCTGCTTATGTATCTATGTACCTATG  1048
      ||||||||||||||||||||||||||||| |||| ||||||||  | |||
seq2  GCTTCCATGTCATCTGTCTATCTTTCTGC-TATG-ATCTATGT--CCATG  1045

seq1  TACCTGTGCACCTATGTACCTATGTATATACG  1080
       |||||||||||||||||||||||||| ||||
seq2  -ACCTGTGCACCTATGTACCTATGTATTTACG  1076