BAC Information

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BAC

Clone NameB6Ng01-013C19
Chromosome8 (Build37)
Map Location 124,816,507 - 125,000,257
singlet/doubletdoublet
Overlap geneZfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22
Downstream geneCdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013C19.bB6Ng01-013C19.g
ACCDH848060DH848061
length999531
definitionDH848060|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C19, 5' end.DH848061|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,816,507 - 124,817,506)(124,999,721 - 125,000,257)
sequence
gaattcagagaccctcctgtctctgcctcccaagcgcagagattaaagac
gtgcaccatcatgcctggttaagttggtatgtttattgcttgtagtaatt
tcatttaccgtcccccacacacacacacacacacacaaaggtggctcttt
tggtgagaatgttggcttgaagggatggagaggcagcttggtcagtaagt
gctctccacgcaagcgtgaggacctgagttcagatctccagcccccttat
aaagagccgagctcggcagtgcgggcctgtatcccagtgctgaggactcg
gggacatgctgcctctggacaatactgcatccctctcgggcaaagagctc
ccgcaggacttcttatttctgaccacccccacctggatgattctagaagt
ttgtctttgtcatcctgggttattgtccccaccctctcctgactaatcac
caggatttcatacctggggtgtctcgggattcacactctgaaccatcaag
ttcaaggatatgagaggggggctagggtccagcctacccatcacccttta
ggcgtctccctggtctgagcctcagtttccgtatctgtaagatggggcta
gagatgcaaaggttgccccgcaaccctggtcctgctccccagaacctcta
gccatattctctggccaccccatctgtcctgtacctcctcgctgcccacc
aaatccagactgctagactccaggccagagaggcacagctggacccagct
ccatctgacctggctgtgtacccttgggccagcacttcacctcactgggg
cctggctacctcatagaagcagatgagcccatgagtgtccttgcaggttc
ttgtgaagagctgatgagacagagcttggaaccctgagtcctggcagaca
ggtgggacccccaccctcccaggttcttctcaagcctgtcttccttcctg
gctggtgcctgaaaaagaggcctcctccttcatgttcacgggtggggga
cggttggtggggaaccgaaggggactgtccccggcctggtggtagaaggt
tcttaccttggccgcggcacgggcggaggctcccgccgcgccggccccgc
gtaatcctcaccggcctgacacatggaggggtgggtcccgactgcggagt
ggcgtgaggagccggcgcgctgagatgccggcgcgctgagatgccgtcac
cgccgagcgggcgctgtcgtgacgcaacccggggaggtggggcctgggcg
gtgacgccagcgcggcgccgtcgcggcagtgacgccgggtctgccggcct
ggatagggggcggcggcggcggcctgccccggggatggcgatgttccgca
gcctggtggcctcggcgcagcagcggcagccgccggctgggcccgcgggc
ggcgacagcggcctggaggcgcagttcagctgtcccatctgcctggaggt
gtaccatcggccagtggccatcggcagctgcggccacacgtgagagcgcg
cgccgggagcccgcgggaggggggtccgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124816507_124817506
seq2: B6Ng01-013C19.b_48_1046

seq1  GAATTCAGAGACCCTCCTGTCTCTGCCTCCCAAGCGCAGAGATTAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACCCTCCTGTCTCTGCCTCCCAAGCGCAGAGATTAAAGAC  50

seq1  GTGCACCATCATGCCTGGTTAAGTTGGTATGTTTATTGCTTGTAGTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCATCATGCCTGGTTAAGTTGGTATGTTTATTGCTTGTAGTAATT  100

seq1  TCATTTACCGTCCCCCACACACACACACACACACACAAAGGTGGCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACCGTCCCCCACACACACACACACACACACAAAGGTGGCTCTTT  150

seq1  TGGTGAGAATGTTGGCTTGAAGGGATGGAGAGGCAGCTTGGTCAGTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAATGTTGGCTTGAAGGGATGGAGAGGCAGCTTGGTCAGTAAGT  200

seq1  GCTCTCCACGCAAGCGTGAGGACCTGAGTTCAGATCTCCAGCCCCCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCACGCAAGCGTGAGGACCTGAGTTCAGATCTCCAGCCCCCTTAT  250

seq1  AAAGAGCCGAGCTCGGCAGTGCGGGCCTGTATCCCAGTGCTGAGGACTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCGAGCTCGGCAGTGCGGGCCTGTATCCCAGTGCTGAGGACTCG  300

seq1  GGGACATGCTGCCTCTGGACAATACTGCATCCCTCTCGGGCAAAGAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGCTGCCTCTGGACAATACTGCATCCCTCTCGGGCAAAGAGCTC  350

seq1  CCGCAGGACTTCTTATTTCTGACCACCCCCACCTGGATGATTCTAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGACTTCTTATTTCTGACCACCCCCACCTGGATGATTCTAGAAGT  400

seq1  TTGTCTTTGTCATCCTGGGTTATTGTCCCCACCCTCTCCTGACTAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGTCATCCTGGGTTATTGTCCCCACCCTCTCCTGACTAATCAC  450

seq1  CAGGATTTCATACCTGGGGTGTCTCGGGATTCACACTCTGAACCATCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTCATACCTGGGGTGTCTCGGGATTCACACTCTGAACCATCAAG  500

seq1  TTCAAGGATATGAGAGGGGGGCTAGGGTCCAGCCTACCCATCACCCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGATATGAGAGGGGGGCTAGGGTCCAGCCTACCCATCACCCTTTA  550

seq1  GGCGTCTCCCTGGTCTGAGCCTCAGTTTCCGTATCTGTAAGATGGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCTCCCTGGTCTGAGCCTCAGTTTCCGTATCTGTAAGATGGGGCTA  600

seq1  GAGATGCAAAGGTTGCCCCGCAACCCTGGTCCTGCTCCCCAGAACCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAAAGGTTGCCCCGCAACCCTGGTCCTGCTCCCCAGAACCTCTA  650

seq1  GCCATATTCTCTGGCCACCCCATCTGTCCTGTACCTCCTCGCTGCCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTCTCTGGCCACCCCATCTGTCCTGTACCTCCTCGCTGCCCACC  700

seq1  AAATCCAGACTGCTAGACTCCAGGCCAGAGAGGCACAGCTGGACCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGACTGCTAGACTCCAGGCCAGAGAGGCACAGCTGGACCCAGCT  750

seq1  CCATCTGACCTGGCTGTGTAACCTTGGGCCAAGCACTTCACCTCACT-GG  799
      |||||||||||||||||||| ||||||||| |||||||||||||||| ||
seq2  CCATCTGACCTGGCTGTGTACCCTTGGGCC-AGCACTTCACCTCACTGGG  799

seq1  GCCTGGCTACCTCATAG-AGCAGATGAGCCCATGAGTGTCCTTGCAGGTC  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GCCTGGCTACCTCATAGAAGCAGATGAGCCCATGAGTGTCCTTGCAGGTT  849

seq1  CTTGTGAAGAGCTGAGGAGACAGAGCTTGGGAACCCTGAGTCCTGGCAGA  898
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  CTTGTGAAGAGCTGATGAGACAGAGCTT-GGAACCCTGAGTCCTGGCAGA  898

seq1  CAGGTGGGACCCCCACCCTCCCAGGTTCTTCTCCAAGCCTGTCTTCCTTC  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGTGGGACCCCCACCCTCCCAGGTTCTTCT-CAAGCCTGTCTTCCTTC  947

seq1  CTGGCTGGTGCCTGAGAGAGAGGCCTCCTCCTTCAGCTCCACGGGTGTGG  998
      ||||||||||||||| | |||||||||||||||||  | |||||||| ||
seq2  CTGGCTGGTGCCTGAAAAAGAGGCCTCCTCCTTCATGTTCACGGGTGGGG  997

seq1  GA  1000
      ||
seq2  GA  999

seq1: chr8_124999721_125000257
seq2: B6Ng01-013C19.g_64_600 (reverse)

seq1  GCCCGGACCCCCCTCCCGCGGGCTCCCGGCGCGCGCTCTCACGTGTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGACCCCCCTCCCGCGGGCTCCCGGCGCGCGCTCTCACGTGTGGCC  50

seq1  GCAGCTGCCGATGGCCACTGGCCGATGGTACACCTCCAGGCAGATGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCCGATGGCCACTGGCCGATGGTACACCTCCAGGCAGATGGGAC  100

seq1  AGCTGAACTGCGCCTCCAGGCCGCTGTCGCCGCCCGCGGGCCCAGCCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTGCGCCTCCAGGCCGCTGTCGCCGCCCGCGGGCCCAGCCGGC  150

seq1  GGCTGCCGCTGCTGCGCCGAGGCCACCAGGCTGCGGAACATCGCCATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCGCTGCTGCGCCGAGGCCACCAGGCTGCGGAACATCGCCATCCC  200

seq1  CGGGGCAGGCCGCCGCCGCCGCCCCCTATCCAGGCCGGCAGACCCGGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCAGGCCGCCGCCGCCGCCCCCTATCCAGGCCGGCAGACCCGGCGT  250

seq1  CACTGCCGCGACGGCGCCGCGCTGGCGTCACCGCCCAGGCCCCACCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCGCGACGGCGCCGCGCTGGCGTCACCGCCCAGGCCCCACCTCCC  300

seq1  CGGGTTGCGTCACGACAGCGCCCGCTCGGCGGTGACGGCATCTCAGCGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTGCGTCACGACAGCGCCCGCTCGGCGGTGACGGCATCTCAGCGCG  350

seq1  CCGGCATCTCAGCGCGCCGGCTCCTCACGCCACTCCGCAGTCGGGACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCATCTCAGCGCGCCGGCTCCTCACGCCACTCCGCAGTCGGGACCCA  400

seq1  CCCCTCCATGTGTCAGGCCGGTGAGGATTACGCGGGGCCGGCGCGGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCATGTGTCAGGCCGGTGAGGATTACGCGGGGCCGGCGCGGCGGG  450

seq1  AGCCTCCGCCCGTGCCGCGGCCAAGGTAAGAACCTTCTACCACCAGGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCGCCCGTGCCGCGGCCAAGGTAAGAACCTTCTACCACCAGGCCG  500

seq1  GGGACAGTCCCCTTCGGTTCCCCACCAACCGGAATTC  537
      |||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTCCCCTTCGGTTCCCCACCAACCGGAATTC  537