BAC Information

Click to search

BAC

Clone NameB6Ng01-013C22
Chromosome8 (Build37)
Map Location 128,687,988 - 128,845,394
singlet/doubletdoublet
Overlap geneSlc35f3
Upstream geneDisc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
Downstream geneLOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013C22.bB6Ng01-013C22.g
ACCDH848066DH848067
length1,113956
definitionDH848066|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C22, 5' end.DH848067|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,687,988 - 128,689,105)(128,844,440 - 128,845,394)
sequence
gaattccaccctcaaactctgaacccgaaataaatccttcctcttttaag
tagcttcctgtcatgtattctgtcacagcagtaagaaaagtaacaaagcc
agaccagtgaagagcctcactcagtgtccctcaggagaagtggcaaatga
tgtgcctctgaggcaggctgtgccgcgcattctaagcatcaccttctgtt
tccaagcaaggatcccttgactagagagaccaccaagtctctctgtcacc
aaccaggtagatgtgtgcgctgagcccggtaaagcttaaggaggtgagtg
agcctgctggtccacagtggtgctgggtctgacaggggattcaaaattta
gctttctgaaaaccatcggctccccagtgctgcttctgaagtgaagatgc
tgcctagacctccagaggctgccttcaaggtgtctgatgccgcctcagct
ctgggtgaggctgcagagagaaaacgaaggctgcccacagggacccctca
aatgcttgcacgagtgtgagaacgtgagggaaagagcgctcggctcctca
aaccctttccttccatttgccagactccacactgggctggatggtgggcg
gctgccatactgatggactttgttctcgagccctttacactagagtttcc
ccatatccacatcattctgagatccagcatcctggacgtcgctgggaaga
ctgtatctctcactgagacctaccacacatcagtcctcatcctaacagac
tctcagggaactctgtcaaaggtgcctctgaagatgctacaagccctgcc
ccaacacatcccacatcagattgccctgtcccgtctctgtgtgacagaac
tgtgtgacagtttcttccatcttgctgtgcattgtggggattatatcgct
gagttacagaacatagttcagtgagcaaaacagcatccctctaccagctt
gtagcatccgcatggtgtactggtgactgtcgatgctctcgcaagaagag
tatgtggagggtacttggacccttccttggaaggtcagctacaagtggct
ccagggacctagggaaggttgctaacccataagcaagaaaaggttaatgg
tgggggggggggc
gaattctgaccttgacttcaggacagagcaggtgcatttttgtgcatatt
gtggtgtctcacccttgatccctcccacagcccaccagcgctgacctcca
gggtcaactcagctgcctggcacttggggaacggcccccaggtgagtgat
cggcggtctaggagtccctacctgtatctctgtttcatagactgcttctc
tgtggatttgcacacatgtcctgcgtagtacaatgggaagaacagaaagt
tccagttggtggcaaaccacgtcagggtgaacggtgcgtcgaaggtcttg
aaagtcagcctggcgagctgcgtggagccggcccaggaggcgcacacgca
gaacacgacagccacaccccagaagaccttcttgagccgctcctgagaac
atgtccagttgtgccggcttgtcctcccaccagcctctgtcccagctggc
gcctgggcctctgcagggcccgggggctcccgggggcgctcctcccctga
agaagagaaggggtgttagctgggtcttccacagttggatccctggcaac
cattcggggggcaggcaggtgggatgctgggtaatgctctggactacagc
tggaagatgtgtgctaggtttcctaaccgaaggccactggaccacaagga
gtgattctccaggtcaggctctgtctgtatcctttacactgccctgggga
actttatgaatggcaaacttttgggctccagattcagatccttggactgc
accttgatccgcatggagagtttgaggatcatattttccatacagatggg
ataaggcagaaacaacaggtctcatatgtcccaggatgccaccatacttt
gctatgtagttgaagagaccttgaacttctgatgtctctacttgtcctcc
ctgggtctaggataacagcggggtgccacacattcattttaggaaatagc
tggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_128687988_128689105
seq2: B6Ng01-013C22.b_46_1157

seq1  GAATTCCACCCTCAAACTCTGAACCCGAAATAAATCCTTCCTCTTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCTCAAACTCTGAACCCGAAATAAATCCTTCCTCTTTTAAG  50

seq1  TAGCTTCCTGTCATGTATTCTGTCACAGCAGTAAGAAAAGTAACAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCTGTCATGTATTCTGTCACAGCAGTAAGAAAAGTAACAAAGCC  100

seq1  AGACCAGTGAAGAGCCTCACTCAGTGTCCCTCAGGAGAAGTGGCAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGAAGAGCCTCACTCAGTGTCCCTCAGGAGAAGTGGCAAATGA  150

seq1  TGTGCCTCTGAGGCAGGCTGTGCCGCGCATTCTAAGCATCACCTTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCTGAGGCAGGCTGTGCCGCGCATTCTAAGCATCACCTTCTGTT  200

seq1  TCCAAGCAAGGATCCCTTGACTAGAGAGACCACCAAGTCTCTCTGTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAAGGATCCCTTGACTAGAGAGACCACCAAGTCTCTCTGTCACC  250

seq1  AACCAGGTAGATGTGTGCGCTGAGCCCGGTAAAGCTTAAGGAGGTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTAGATGTGTGCGCTGAGCCCGGTAAAGCTTAAGGAGGTGAGTG  300

seq1  AGCCTGCTGGTCCACAGTGGTGCTGGGTCTGACAGGGGATTCAAAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGGTCCACAGTGGTGCTGGGTCTGACAGGGGATTCAAAATTTA  350

seq1  GCTTTCTGAAAACCATCGGCTCCCCAGTGCTGCTTCTGAAGTGAAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGAAAACCATCGGCTCCCCAGTGCTGCTTCTGAAGTGAAGATGC  400

seq1  TGCCTAGACCTCCAGAGGCTGCCTTCAAGGTGTCTGATGCCGCCTCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGACCTCCAGAGGCTGCCTTCAAGGTGTCTGATGCCGCCTCAGCT  450

seq1  CTGGGTGAGGCTGCAGAGAGAAAACGAAGGCTGCCCACAGGGACCCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGAGGCTGCAGAGAGAAAACGAAGGCTGCCCACAGGGACCCCTCA  500

seq1  AATGCTTGCACGAGTGTGAGAACGTGAGGGAAAGAGCGCTCGGCTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGCACGAGTGTGAGAACGTGAGGGAAAGAGCGCTCGGCTCCTCA  550

seq1  AACCCTTTCCTTCCATTTGCCAGACTCCACACTGGGCTGGATGGTGGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTCCTTCCATTTGCCAGACTCCACACTGGGCTGGATGGTGGGCG  600

seq1  GCTGCCATACTGATGGACTTTGTTCTCGAGCCCTTTACACTAGAGTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATACTGATGGACTTTGTTCTCGAGCCCTTTACACTAGAGTTTCC  650

seq1  CCATATCCACATCATTCTGAGATCCAGCATCCTGGACGTCGCTGGGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCACATCATTCTGAGATCCAGCATCCTGGACGTCGCTGGGAAGA  700

seq1  CTGTATCTCTCACTGAGACCTACCACACATCAGTCCTCATCCTAACAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTCTCACTGAGACCTACCACACATCAGTCCTCATCCTAACAGAC  750

seq1  TCTCAGGGAACTCTGTCAAAGGTGCCTCTGAAGATGCTACAAAGCCCTGC  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTCAGGGAACTCTGTCAAAGGTGCCTCTGAAGATGCTAC-AAGCCCTGC  799

seq1  CCCAACACATCCCACATCAGATTGCCCTGTCCCGTCTCTGTGTGACAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACATCCCACATCAGATTGCCCTGTCCCGTCTCTGTGTGACAGAA  849

seq1  CTGTGTGACAGTTTC-TCCATCTTGCTGTGCATTGT-GGGATTATATCGC  898
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CTGTGTGACAGTTTCTTCCATCTTGCTGTGCATTGTGGGGATTATATCGC  899

seq1  TGAGTTACAGAACATAGTCCAGTGAGCAAAACAGCATCCCTCTACCAGCT  948
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAGTTACAGAACATAGTTCAGTGAGCAAAACAGCATCCCTCTACCAGCT  949

seq1  TGTAAGCATCCGCCATGGTGGGACTTGGTGACTGTCGATGCTCTCGCAAA  998
      ||| |||||||| |||||| | || |||||||||||||||||||||| ||
seq2  TGT-AGCATCCG-CATGGT-GTAC-TGGTGACTGTCGATGCTCTCGC-AA  994

seq1  GAAGAAGTAATGTGGAGGGTTACTGGACCCTCCCTTGAGAGTCCAGCTAC  1048
      |||| ||| |||||||||||   |||||||| |||||  ||  |||||||
seq2  GAAG-AGT-ATGTGGAGGGTACTTGGACCCTTCCTTGGAAGGTCAGCTAC  1042

seq1  AAGTGGCCTCAGGGACCTAAGGAAGG-TGCTAAACCACATAGGCAGAGAA  1097
      |||||||  |||||||||| |||||| |||||| ||| | ||  ||| ||
seq2  AAGTGGCTCCAGGGACCTAGGGAAGGTTGCTAACCCATA-AGCAAGAAAA  1091

seq1  GGTTAATGGTGGGGGGGGGGG  1118
      |||||||||||||||||||||
seq2  GGTTAATGGTGGGGGGGGGGG  1112

seq1: chr8_128844440_128845394
seq2: B6Ng01-013C22.g_67_1022 (reverse)

seq1  ACCCCTGCTATTTCATAAACTGGATGTGGTGGCACACAGCTGTCATCCTA  50
      ||||| |||||||| |||| || |||| ||||||| | ||||| ||||||
seq2  ACCCCAGCTATTTCCTAAAATGAATGT-GTGGCACCCCGCTGTTATCCTA  49

seq1  GACCCAGGGAGGAACAAGTAGAGACATCAGAAGTTCAAGGTCATCTTCAA  100
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GACCCAGGGAGG-ACAAGTAGAGACATCAGAAGTTCAAGGTC-TCTTCAA  97

seq1  CTTCATAGC-AAGTTTGGTGGCATCCTGGGACATATGAGACCTGTTGTTT  149
      || |||||| |||| |||||||||||||||||||||||||||||||||||
seq2  CTACATAGCAAAGTATGGTGGCATCCTGGGACATATGAGACCTGTTGTTT  147

seq1  CTG-CTTCT-CCATCTGTTATGG-AAATATGTTCCTCAAACTCTCCATGC  196
      ||| ||| | ||||||| ||||| ||||||| ||||||||||||||||||
seq2  CTGCCTTATCCCATCTG-TATGGAAAATATGATCCTCAAACTCTCCATGC  196

seq1  GGATC-AGGTGCAGTCCAAGGATCTGAATCTGGAGCCCAAAAGTTTGCCA  245
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGTGCAGTCCAAGGATCTGAATCTGGAGCCCAAAAGTTTGCCA  246

seq1  TTCATAAAGTTCCCCAGGGCAGTGTTAAAGGATACAGACAGAGCCTGACC  295
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCATAAAGTTCCCCAGGGCAGTG-TAAAGGATACAGACAGAGCCTGACC  295

seq1  TGGAGAATCACTCCTTGTGGTCCAGTGGCCTTCGGTTAGGAAACCTAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATCACTCCTTGTGGTCCAGTGGCCTTCGGTTAGGAAACCTAGCA  345

seq1  CACATCTTCCAGCTGTAGTCCAGAGCATTACCCAGCATCCCACCTGCCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCCAGCTGTAGTCCAGAGCATTACCCAGCATCCCACCTGCCTG  395

seq1  -CCCCCGAATGGTTGCCAGGGATCCAACTGTGGAAGACCCAGCTAACACC  444
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGAATGGTTGCCAGGGATCCAACTGTGGAAGACCCAGCTAACACC  445

seq1  CCTTCTCTTCTTCAGGGGAGGAGCGCCCCCGGGAGCCCCCGGGCCCTGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTTCTTCAGGGGAGGAGCGCCCCCGGGAGCCCCCGGGCCCTGCA  495

seq1  GAGGCCCAGGCGCCAGCTGGGACAGAGGCTGGTGGGAGGACAAGCCGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCAGGCGCCAGCTGGGACAGAGGCTGGTGGGAGGACAAGCCGGCA  545

seq1  CAACTGGACATGTTCTCAGGAGCGGCTCAAGAAGGTCTTCTGGGGTGTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGACATGTTCTCAGGAGCGGCTCAAGAAGGTCTTCTGGGGTGTGG  595

seq1  CTGTCGTGTTCTGCGTGTGCGCCTCCTGGGCCGGCTCCACGCAGCTCGCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTGTTCTGCGTGTGCGCCTCCTGGGCCGGCTCCACGCAGCTCGCC  645

seq1  AGGCTGACTTTCAAGACCTTCGACGCACCGTTCACCCTGACGTGGTTTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTTTCAAGACCTTCGACGCACCGTTCACCCTGACGTGGTTTGC  695

seq1  CACCAACTGGAACTTTCTGTTCTTCCCATTGTACTACGCAGGACATGTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTGGAACTTTCTGTTCTTCCCATTGTACTACGCAGGACATGTGT  745

seq1  GCAAATCCACAGAGAAGCAGTCTATGAAACAGAGATACAGGTAGGGACTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCACAGAGAAGCAGTCTATGAAACAGAGATACAGGTAGGGACTC  795

seq1  CTAGACCGCCGATCACTCACCTGGGGGCCGTTCCCCAAGTGCCAGGCAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCGCCGATCACTCACCTGGGGGCCGTTCCCCAAGTGCCAGGCAGC  845

seq1  TGAGTTGACCCTGGAGGTCAGCGCTGGTGGGCTGTGGGAGGGATCAAGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGACCCTGGAGGTCAGCGCTGGTGGGCTGTGGGAGGGATCAAGGG  895

seq1  TGAGACACCACAATATGCACAAAAATGCACCTGCTCTGTCCTGAAGTCAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACACCACAATATGCACAAAAATGCACCTGCTCTGTCCTGAAGTCAA  945

seq1  GGTCAGAATTC  955
      |||||||||||
seq2  GGTCAGAATTC  956