BAC Information

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BAC

Clone NameB6Ng01-016C09
Chromosome8 (Build37)
Map Location 109,783,075 - 109,930,262
singlet/doubletdoublet
Overlap geneLOC100042791, Nfat5, Nqo1
Upstream geneSmpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b
Downstream geneNob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C09.bB6Ng01-016C09.g
ACCDH850206DH850207
length425905
definitionDH850206|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C09, 5' end.DH850207|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,783,075 - 109,783,499)(109,929,364 - 109,930,262)
sequence
gaattcagttcgggttggctttgtagatacttgtctctcatcccaagcct
ttaatcttcgatttcctcgcctttagacaggagtgatgatactaccaact
tcaaagaggagtcttttagggattaaatgagattatccatgaagattcct
ggcacatattagaagacaataaaaaggcttaagcaggactggagagatgg
ctcagcatataaaggtccctgctatgcaaacccagccatctaggttcaat
ccccaaaacctacataaaggtggaagagaactgactgcatcaagttgtct
tctgaccttcaaatatatgttgtggcacctccacccctaccaccacatca
cacattaaataataataaacaaatatttaagcaatgtaatttttttctgg
agtgtgtgcgtgtgtgcatgtgtgc
gaattccagtactgtggagaaactgagatttcatacgttcagaggctaat
tatctagttttagctttctggagctaacaccttgtgataataaataaaaa
actcacagaagatataacttagcagaatattagcctctgtgcctgttggc
ctacagggcagggccctcagaagaggaggggaggagttgctgaggggagg
gagtcaatcaatggtcagggtagtcttgcagctctgactggcaacgaggt
acttgttatttatacaggtttcacagaacaaagacagtctaatgattatg
caagaagtacagattgtgtgtctgacttttcgttacaagttcagacacaa
ttagaaaatacaaatgcacagattttatttttattgttagctctataact
gcaatgtcaagaatcttaaagactgtctcctccaaagcaaacacattata
tggcagcctgcttttagggtggcagtgtttgcagtctgaaagcacttcag
acaaacagaagatatctgaactggtctttctatgaatagcaaacattaat
acctaacttattacatgtttcctcatctgtgctatacagtagagaacgtg
tagtcaatctcccttattttccgagtgctattcctccaggggtatgccct
gtatgactcgctatcttacatttttcagtaatctctaagcatattgtaaa
agaaggccttgaatctgtcccctttttctcctggccagtcagagttttgt
cggttgtctctgttttaccctgcactaatcagactgtttgagtttattca
ggggtagacaccccatgaagattcctggagtaatggcttcatctatttac
gtgttttatctgagcttaatgatcttccaggccatgatggagacatccaa
acagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109783075_109783499
seq2: B6Ng01-016C09.b_43_467

seq1  GAATTCAGTTCGGGTTGGCTTTGTAGATACTTGTCTCTCATCCCAAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCGGGTTGGCTTTGTAGATACTTGTCTCTCATCCCAAGCCT  50

seq1  TTAATCTTCGATTTCCTCGCCTTTAGACAGGAGTGATGATACTACCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTCGATTTCCTCGCCTTTAGACAGGAGTGATGATACTACCAACT  100

seq1  TCAAAGAGGAGTCTTTTAGGGATTAAATGAGATTATCCATGAAGATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGGAGTCTTTTAGGGATTAAATGAGATTATCCATGAAGATTCCT  150

seq1  GGCACATATTAGAAGACAATAAAAAGGCTTAAGCAGGACTGGAGAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATATTAGAAGACAATAAAAAGGCTTAAGCAGGACTGGAGAGATGG  200

seq1  CTCAGCATATAAAGGTCCCTGCTATGCAAACCCAGCCATCTAGGTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATATAAAGGTCCCTGCTATGCAAACCCAGCCATCTAGGTTCAAT  250

seq1  CCCCAAAACCTACATAAAGGTGGAAGAGAACTGACTGCATCAAGTTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAACCTACATAAAGGTGGAAGAGAACTGACTGCATCAAGTTGTCT  300

seq1  TCTGACCTTCAAATATATGTTGTGGCACCTCCACCCCTACCACCACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTTCAAATATATGTTGTGGCACCTCCACCCCTACCACCACATCA  350

seq1  CACATTAAATAATAATAAACAAATATTTAAGCAATGTAATTTTTTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAATAATAATAAACAAATATTTAAGCAATGTAATTTTTTTCTGG  400

seq1  AGTGTGTGCGTGTGTGCATGTGTGC  425
      |||||||||||||||||||||||||
seq2  AGTGTGTGCGTGTGTGCATGTGTGC  425

seq1: chr8_109929364_109930262
seq2: B6Ng01-016C09.g_67_971 (reverse)

seq1  ACTGTTTGGATGTCTCCCTCATGGCCTGG-AGATCATTAAGCTCAGAT-A  48
      ||||||||||||||||| ||||||||||| |||||||||||||||||| |
seq2  ACTGTTTGGATGTCTCCATCATGGCCTGGAAGATCATTAAGCTCAGATAA  50

seq1  AACACGTAACTAGATGAAGCCATTACTCCAGGAATCTTCTTGGGGTGTCT  98
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AACACGTAAATAGATGAAGCCATTACTCCAGGAATCTTCATGGGGTGTCT  100

seq1  ACCCCTGAATAAACTCAAACAGTCTGATTAGTGCAGGGT-AAACAGAGAC  147
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCCCTGAATAAACTCAAACAGTCTGATTAGTGCAGGGTAAAACAGAGAC  150

seq1  AACCGAC-AAACTCTGACTGGCCAGGAG-AAAAGGGGACAGATTCAAGGC  195
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AACCGACAAAACTCTGACTGGCCAGGAGAAAAAGGGGACAGATTCAAGGC  200

seq1  CTTCTTTTACAATATGCTTAGAGATTACTG-AAAATGTAAGATAGCGAGT  244
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTCTTTTACAATATGCTTAGAGATTACTGAAAAATGTAAGATAGCGAGT  250

seq1  CATACAGGGCATACCCCTGGAGGAATAGCACTCGGAAAATAAGGGAGATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGGCATACCCCTGGAGGAATAGCACTCGGAAAATAAGGGAGATT  300

seq1  GACTACACGTTCTCTACTGTATAGCACAGATGAGGAAACATGTAATAAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACGTTCTCTACTGTATAGCACAGATGAGGAAACATGTAATAAGT  350

seq1  TAGGTATTAATGTTTGCTATTCATAGAAAGACCAGTTCAGATATCTTCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTAATGTTTGCTATTCATAGAAAGACCAGTTCAGATATCTTCTG  400

seq1  TTTGTCTGAAGTGCTTTCAGACTGCAAACACTGCCACCCTAAAAGCAGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGAAGTGCTTTCAGACTGCAAACACTGCCACCCTAAAAGCAGGC  450

seq1  TGCCATATAATGTGTTTGCTTTGGAGGAGACAGTCTTTAAGATTCTTGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATAATGTGTTTGCTTTGGAGGAGACAGTCTTTAAGATTCTTGAC  500

seq1  ATTGCAGTTATAGAGCTAACAATAAAAATAAAATCTGTGCATTTGTATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTTATAGAGCTAACAATAAAAATAAAATCTGTGCATTTGTATTT  550

seq1  TCTAATTGTGTCTGAACTTGTAACGAAAAGTCAGACACACAATCTGTACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTGTGTCTGAACTTGTAACGAAAAGTCAGACACACAATCTGTACT  600

seq1  TCTTGCATAATCATTAGACTGTCTTTGTTCTGTGAAACCTGTATAAATAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATAATCATTAGACTGTCTTTGTTCTGTGAAACCTGTATAAATAA  650

seq1  CAAGTACCTCGTTGCCAGTCAGAGCTGCAAGACTACCCTGACCATTGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCTCGTTGCCAGTCAGAGCTGCAAGACTACCCTGACCATTGATT  700

seq1  GACTCCCTCCCCTCAGCAACTCCTCCCCTCCTCTTCTGAGGGCCCTGCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTCCCCTCAGCAACTCCTCCCCTCCTCTTCTGAGGGCCCTGCCC  750

seq1  TGTAGGCCAACAGGCACAGAGGCTAATATTCTGCTAAGTTATATCTTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCAACAGGCACAGAGGCTAATATTCTGCTAAGTTATATCTTCTG  800

seq1  TGAGTTTTTTATTTATTATCACAAGGTGTTAGCTCCAGAAAGCTAAAACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTTTATTTATTATCACAAGGTGTTAGCTCCAGAAAGCTAAAACT  850

seq1  AGATAATTAGCCTCTGAACGTATGAAATCTCAGTTTCTCCACAGTACTGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTAGCCTCTGAACGTATGAAATCTCAGTTTCTCCACAGTACTGG  900

seq1  AATTC  899
      |||||
seq2  AATTC  905