BAC Information

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BAC

Clone NameB6Ng01-016D08
Chromosome8 (Build37)
Map Location 50,848,861 - 51,011,071
singlet/doubletdoublet
Overlap genenone
Upstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016D08.bB6Ng01-016D08.g
ACCDH850244DH850245
length1,217568
definitionDH850244|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D08, 5' end.DH850245|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,009,842 - 51,011,071)(50,848,861 - 50,849,434)
sequence
gaattcatttgactatagttagcctgcgtctgtgtagctgaaggaattga
tgcccgtagggaatggtcttgctgtctactctgctacttccctggtatca
tatggcctccctcccagttttagatcctcaaaggactaaaaccacaaaaa
tcgttttattgacaggtttttctttttccaaagatttcaaggatgttata
aaatcaaaggcctagatatgaaagaaagctggtcattcatccatatgcat
tgcatctcacaaaggtgaaatgcacgccttctaagaataattggagcaaa
ggtgctaacaggtacaaaccttagaagttggcgatcctatcagcgcgttt
tgtttacgttccattacgtgactcatgcacttcatcaaactactggatac
tcaagttacagaagacaatggcttattgtgactatcttaaaaaaaaaaaa
aaaaaaaaaaaagaaagaaagaaaggaaaaagaaaaccttgaaagttgta
acctttttttctactctcattttgtgataaaatcaaagagaatccattac
tctcctgtaatttttagtgcttgtcagaagatcctatccacacagcgtcg
aggcatgaaactgtctcctaaatgttccgtaactcaccagctacatttta
gtcattaaactaaacacctttaattgatccactgacttttttcttcctcg
tggatctcaaatacttattgtttgtatcagcaagtccagtttctatcaca
aaggaagaaaaagactaagagtatttactttaaaattcacaaaaatagct
tttctgtgtgtgagtggccacaagagaagacaggaggagccagggtctgt
cttcctgggacattgtacatcattctgcactttactaagtgaaggcgtca
tttaccattttgagacaggcccttacaacatgcataaatgaaagggtatg
cagtagaataaaaatagaaagttatatttcctagaaagtcaggagtacag
tctcaacttattaaaggattttaagggcctgtgattgtagaaagaagagc
agagcaagaaggcaggttaattccttagttagtctacgtgcttttgtatt
gaagaaagttcttttttgggaaatgttgacaatcatttggttaattttaa
ctgttttgaaaattgaggccttcatgacttgcttatggacaattgaatgg
ggacaatttatatatga
tttaagagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggg
aagaaactttcagtttttaatattcctctattttccatttctctttttaa
aagttgtcatgataatacatttattgtctaaaatatttcatagaaaattt
gtttggcttatctcttagatgtggaaacctgagacctgaggtagcttctt
gtcttctgaaggaccttatcttctggacaaagaatgctttgcagcaatac
cacccaacccttctttaaacattttcccttgagattcttcttattaatga
gttctttcatatatttctcatatacccactccatgatatcaatgattaca
tgttttcatatatgcagaaaaatgatcagcactagcctctttttctacta
ggtctcatacctactccacagtcgactgacctatagtaggtttgaaattg
gcttctgaattgtaatccttgattttggaatcctaattggtgatcatttc
agaatacagatgatagagaaatgtataatcatagttccctttgggactcc
acaacctttgtttgtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51009842_51011071
seq2: B6Ng01-016D08.b_45_1261 (reverse)

seq1  TCATATAT-AATTGT-CACATTCATATTGTCAATAAGCATTAGTCCATGA  48
      |||||||| |||||| | |||||| |||||| |||||||  ||| |||||
seq2  TCATATATAAATTGTCCCCATTCA-ATTGTCCATAAGCA--AGT-CATGA  46

seq1  AAGACCTTTCAATATTTTAAAACTAAGTTTAAATATAACAACATGATTTG  98
      | | |   ||||| ||| |||||  |||| |||| |||| | |||| |||
seq2  AGGCC---TCAAT-TTTCAAAAC--AGTTAAAAT-TAACCAAATGA-TTG  88

seq1  TCACCATTTCCCAAAAGA-AACTTTTTCTTTCAATAC-AAAGCACCCGTA  146
      ||| |||||||||||| | ||||||    |||||||| ||||||  ||||
seq2  TCAACATTTCCCAAAAAAGAACTTT---CTTCAATACAAAAGCA--CGTA  133

seq1  GACTAACTAGGGAAATTTACCCTGCTTTCTTGCTCCTGCTC-TCTTTCTT  195
      ||||||||| ||||  ||| ||||| |||||||| |||||| |||||| |
seq2  GACTAACTAAGGAA--TTAACCTGCCTTCTTGCT-CTGCTCTTCTTTC-T  179

seq1  ACAATTCACAG--CCCTAAAATTCTTTATTAGGTTGAGACTGTACTCCCT  243
      |||| ||||||  || |||||| ||||| || |||||||||||||| |||
seq2  ACAA-TCACAGGCCCTTAAAATCCTTTAATAAGTTGAGACTGTACT-CCT  227

seq1  GACTTTCTAGG-AATAT-ACTTTCTA-TTTTATTCTACTGCATA-CCTTT  289
      ||||||||||| ||||| |||||||| ||||||||||||||||| |||||
seq2  GACTTTCTAGGAAATATAACTTTCTATTTTTATTCTACTGCATACCCTTT  277

seq1  CATTTATGCATGTTGTAAGGGCCTGTCTCCAAAATGGTAAATGACGCCTT  339
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTTATGCATGTTGTAAGGGCCTGTCT-CAAAATGGTAAATGACGCCTT  326

seq1  CACTTAGTAAAGTGCAGAATGATGTACAATGTCCCAGGAAGACAGACCCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTAAAGTGCAGAATGATGTACAATGTCCCAGGAAGACAGACCCT  376

seq1  GGCTCCTCCTGTCTTCTCTTGTGGCCACTCACACACAGAAAAGCTATTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCCTGTCTTCTCTTGTGGCCACTCACACACAGAAAAGCTATTTT  426

seq1  TGTGAATTTTAAAGTAAATACTCTTAGTCTTTTTCTTCCTTTGTGATAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTTAAAGTAAATACTCTTAGTCTTTTTCTTCCTTTGTGATAGA  476

seq1  AACTGGACTTGCTGATACAAACAATAAGTATTTGAGATCCACGAGGAAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACTTGCTGATACAAACAATAAGTATTTGAGATCCACGAGGAAGA  526

seq1  AAAAAGTCAGTGGATCAATTAAAGGTGTTTAGTTTAATGACTAAAATGTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCAGTGGATCAATTAAAGGTGTTTAGTTTAATGACTAAAATGTA  576

seq1  GCTGGTGAGTTACGGAACATTTAGGAGACAGTTTCATGCCTCGACGCTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGTTACGGAACATTTAGGAGACAGTTTCATGCCTCGACGCTGT  626

seq1  GTGGATAGGATCTTCTGACAAGCACTAAAAATTACAGGAGAGTAATGGAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGGATCTTCTGACAAGCACTAAAAATTACAGGAGAGTAATGGAT  676

seq1  TCTCTTTGATTTTATCACAAAATGAGAGTAGAAAAAAAGGTTACAACTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGATTTTATCACAAAATGAGAGTAGAAAAAAAGGTTACAACTTT  726

seq1  CAAGGTTTTCTTTTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTTCTTTTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTT  776

seq1  TTTAAGATAGTCACAATAAGCCATTGTCTTCTGTAACTTGAGTATCCAGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATAGTCACAATAAGCCATTGTCTTCTGTAACTTGAGTATCCAGT  826

seq1  AGTTTGATGAAGTGCATGAGTCACGTAATGGAACGTAAACAAAACGCGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGAAGTGCATGAGTCACGTAATGGAACGTAAACAAAACGCGCT  876

seq1  GATAGGATCGCCAACTTCTAAGGTTTGTACCTGTTAGCACCTTTGCTCCA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATCGCCAACTTCTAAGGTTTGTACCTGTTAGCACCTTTGCTCCA  926

seq1  ATTATTCTTAGAAGGCGTGCATTTCACCTTTGTGAGATGCAATGCATATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTAGAAGGCGTGCATTTCACCTTTGTGAGATGCAATGCATATG  976

seq1  GATGAATGACCAGCTTTCTTTCATATCTAGGCCTTTGATTTTATAACATC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGACCAGCTTTCTTTCATATCTAGGCCTTTGATTTTATAACATC  1026

seq1  CTTGAAATCTTTGGAAAAAGAAAAACCTGTCAATAAAACGATTTTTGTGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATCTTTGGAAAAAGAAAAACCTGTCAATAAAACGATTTTTGTGG  1076

seq1  TTTTAGTCCTTTGAGGATCTAAAACTGGGAGGGAGGCCATATGATACCAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCCTTTGAGGATCTAAAACTGGGAGGGAGGCCATATGATACCAG  1126

seq1  GGAAGTAGCAGAGTAGACAGCAAGACCATTCCCTACGGGCATCAATTCCT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGCAGAGTAGACAGCAAGACCATTCCCTACGGGCATCAATTCCT  1176

seq1  TCAGCTACACAGACGCAGGCTAACTATAGTCAAATGAATTC  1230
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACACAGACGCAGGCTAACTATAGTCAAATGAATTC  1217

seq1: chr8_50848861_50849434
seq2: B6Ng01-016D08.g_66_639

seq1  GAATTCTTTAAGAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TATGGCAAGAAACTTTCAGTTTTTAATATTCCTCTATTTTCCATTTCTCT  100
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAGAAACTTTCAGTTTTTAATATTCCTCTATTTTCCATTTCTCT  100

seq1  TTTTAAAAGTTGTCATGATAATACATTTATTGTCTAAAATATTTCATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTTGTCATGATAATACATTTATTGTCTAAAATATTTCATAGA  150

seq1  AAATTTGTTTGGCTTATCTCTTAGATGTGGAAACCTGAGACCTGAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTTGGCTTATCTCTTAGATGTGGAAACCTGAGACCTGAGGTAG  200

seq1  CTTCTTGTCTTCTGAAGGACCTTATCTTCTGGACAAAGAATGCTTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTCTTCTGAAGGACCTTATCTTCTGGACAAAGAATGCTTTGCAG  250

seq1  CAATACCACCCAACCCTTCTTTAAACATTTTCCCTTGAGATTCTTCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCACCCAACCCTTCTTTAAACATTTTCCCTTGAGATTCTTCTTAT  300

seq1  TAATGAGTTCTTTCATATATTTCTCATATACCCACTCCATGATATCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTCTTTCATATATTTCTCATATACCCACTCCATGATATCAATG  350

seq1  ATTACATGTTTTCATATATGCAGAAAAATGATCAGCACTAGCCTCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTTTTCATATATGCAGAAAAATGATCAGCACTAGCCTCTTTTT  400

seq1  CTACTAGGTCTCATACCTACTCCACAGTCGACTGACCTATAGTAGGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGGTCTCATACCTACTCCACAGTCGACTGACCTATAGTAGGTTTG  450

seq1  AAATTGGCTTCTGAATTGTAATCCTTGATTTTGGAATCCTAATTGGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCTTCTGAATTGTAATCCTTGATTTTGGAATCCTAATTGGTGAT  500

seq1  CATTTCAGAATACAGATGATAGAGAAATGTATAATCATAGTTCCCTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGAATACAGATGATAGAGAAATGTATAATCATAGTTCCCTTTGG  550

seq1  GACTCCACAACCTTTGTTTGTAGT  574
      ||||||||||||||||||||||||
seq2  GACTCCACAACCTTTGTTTGTAGT  574