BAC Information

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BAC

Clone NameB6Ng01-016K19
Chromosome8 (Build37)
Map Location 55,101,633 - 55,250,349
singlet/doubletdoublet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K19.bB6Ng01-016K19.g
ACCDH850574DH850575
length1,1501,105
definitionDH850574|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K19, 5' end.DH850575|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,249,192 - 55,250,349)(55,101,633 - 55,102,738)
sequence
gaattctcttttctcttttcttctaattatcctaactttgagcacattca
acattaaaaaagaaaaaaagaaaaagttgtgactggaaggtataaaagca
ataattcctaaaaatgagaagaggtgaaagttcaaagttcatgtctgcag
ttaaacttagtgtcctggccacacacccacagctgttcaaagcctttaga
actcaagagtagatttaaaatgaaaagcagatagaagagtcttgacactc
agctctgaacacattttaacatactgtgatgcatgaaactcacaccacat
tacaaataggttaaaacctcaagtcaggagctctcagagtccttgataaa
attcttaacaccatcaatatctttatttgaccaaaagcaatgcttttttt
cacagatttattggttaaaataatattttcctgaagaaaatattattatt
gcataactttctgctaactttcctggtcaagagctctttctccacatcaa
gatgaaacctgttttctagcaactgtacttgccaaatattaatttgttaa
ggacacaacacaaatcacattccatttaaaaatacatgaatacatacgag
tggaataaattaatcttccatgcccctgcagcattctggaagaaatattt
ctaactacagtgcaaataataccgcctacttgtactataaagatccatat
tatactgaggttcaaatgtattctgttgtaaaaaaaaatatgatacattg
tattcaaatataaagaaataatgttggcaatacatatgtttatataattt
ctataaacttaaagaaacaaattgctgtatctttttgagtaggaaataca
gaattttaaataatgcttaaaattagttcatgaagctagactggtttctc
ttgcctagtgcctaatgactattaaaaaaaaaactgctcaacttcttgag
agcaaacttcagcgtcacagtatacctttggtcctagtaaccatgcattc
atattatgatctttatgatgccattttgggggaatgggaacattcatggc
acttcagaactccacatgccacatttcatagcgaatacctttcttctgct
ctactttcatcaaaaaatacttattttctgcaagatcacttaacttttgc

gaattctgtagctaaaaactggggcatacttcacagactggtggagcact
aagcagagttctgagggctgatactttgaagtgtctactagtttcacact
gtatgaaaaacctaacattgtttatattgggaattaatattatgttatta
tccaagatgtgctactactgtagctgtaaatttctctgatacttttttta
tgctatggttggaaactgtacaagaaaaaataagtttacttgccttggag
tttttgtacttaaaaatccaattatttagacagagatgtacaagtgaaaa
tgaggaaaaaagagtgttagaacacagaacttgaactgataagtaattct
agaaaaactcttaatagagactaaatagaggggattaaaagaaatcagat
ctccctgagaaaagtctttctcttttagataattaaatagtcttttaaat
gactttatttaaaacctgagcttccaaggctgagcacttgccttcacatc
atcttatgttcattaactttagaaaatcttggggaaggcatgccaaagaa
acaattagttcacagcctgctacactgagagacggagagtggctgagctg
atgtgatcttcatcgtggaaaatgaactctggacttgagttgtttgtgaa
tattttgtttatccctaatcaatccattttcatggaaaattcataaagct
tagaaattgtcatttatcttaatactgcagactgacaagtcaattaagga
aactgaatttgtttgcttattacattgaacagtaagcactggtttctcaa
tcttaggaaattagcatctttctctaacctcctgagggaagctgcaggaa
gattgaaaatgagagccaatttcagtgtatgtttcctgaaacagtgctct
actaattttgctatggtaacaaaaccctattaattttctaacagacatta
gtattaaaacatttgagatttatcagaaatgaccttaaaacctcttcaat
gtattgaatccgtttgaaactatgtatatggagaccaagttcagagactt
ctcagtgaattctccttgactgttcgaatattgatgggatgaatggaagg
aatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55249192_55250349
seq2: B6Ng01-016K19.b_44_1193 (reverse)

seq1  GCAAAAGCTAAAGTGAATCTTGCAGAAAATAAGTTATTTGTTGATGAAAG  50
      ||||||| | ||||| ||||||||||||||||| ||||| ||||||||||
seq2  GCAAAAG-TTAAGTG-ATCTTGCAGAAAATAAG-TATTTTTTGATGAAAG  47

seq1  TAGAGCCAGAAGAAAGGTATCTGCTATGAAAATGT-GCATGTGGAG-TCT  98
      ||||| ||||||||||||||  |||||| |||||| |||||||||| |||
seq2  TAGAG-CAGAAGAAAGGTATTCGCTATG-AAATGTGGCATGTGGAGTTCT  95

seq1  GAAGTGCCATGAATGTTCCCATTTCCCCCAAAATGGCATCATAAAGATCA  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGTGCCATGAATGTTCCCA-TTCCCCCAAAATGGCATCATAAAGATCA  144

seq1  TAATAATGAATGCATGGTTACTAGGACCAAAGGTATAACTGTGACGCCTG  198
      |||| ||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TAAT-ATGAATGCATGGTTACTAGGACCAAAGGTAT-ACTGTGACG-CTG  191

seq1  AAGTTTGCTCTCAAGAAGTTGAGCAGTTTTTTTTTTAAATAGTCATTAGG  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTTTGCTCTCAAGAAGTTGAGCAGTTTTTTTTTT-AATAGTCATTAGG  240

seq1  CACTAGGCAAGAGAAACCAGTCTAGCTTCATGAACTAATTTTAAGCATTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCAAGAGAAACCAGTCTAGCTTCATGAACTAATTTTAAGCATTA  290

seq1  TTTAAAATTCTGTATTTCCTACTCAAAAAGATACAGCAATTTGTTTCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTCTGTATTTCCTACTCAAAAAGATACAGCAATTTGTTTCTTT  340

seq1  AAGTTTATAGAAATTATATAAACATATGTATTGCCAACATTATTTCTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATAGAAATTATATAAACATATGTATTGCCAACATTATTTCTTTA  390

seq1  TATTTGAATACAATGTATCATATTTTTTTTTACAACAGAATACATTTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATACAATGTATCATATTTTTTTTTACAACAGAATACATTTGAA  440

seq1  CCTCAGTATAATATGGATCTTTATAGTACAAGTAGGCGGTATTATTTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTATAATATGGATCTTTATAGTACAAGTAGGCGGTATTATTTGCA  490

seq1  CTGTAGTTAGAAATATTTCTTCCAGAATGCTGCAGGGGCATGGAAGATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTAGAAATATTTCTTCCAGAATGCTGCAGGGGCATGGAAGATTA  540

seq1  ATTTATTCCACTCGTATGTATTCATGTATTTTTAAATGGAATGTGATTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCCACTCGTATGTATTCATGTATTTTTAAATGGAATGTGATTTG  590

seq1  TGTTGTGTCCTTAACAAATTAATATTTGGCAAGTACAGTTGCTAGAAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTCCTTAACAAATTAATATTTGGCAAGTACAGTTGCTAGAAAAC  640

seq1  AGGTTTCATCTTGATGTGGAGAAAGAGCTCTTGACCAGGAAAGTTAGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCATCTTGATGTGGAGAAAGAGCTCTTGACCAGGAAAGTTAGCAG  690

seq1  AAAGTTATGCAATAATAATATTTTCTTCAGGAAAATATTATTTTAACCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGCAATAATAATATTTTCTTCAGGAAAATATTATTTTAACCAA  740

seq1  TAAATCTGTGAAAAAAAGCATTGCTTTTGGTCAAATAAAGATATTGATGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGTGAAAAAAAGCATTGCTTTTGGTCAAATAAAGATATTGATGG  790

seq1  TGTTAAGAATTTTATCAAGGACTCTGAGAGCTCCTGACTTGAGGTTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAATTTTATCAAGGACTCTGAGAGCTCCTGACTTGAGGTTTTAA  840

seq1  CCTATTTGTAATGTGGTGTGAGTTTCATGCATCACAGTATGTTAAAATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGTAATGTGGTGTGAGTTTCATGCATCACAGTATGTTAAAATGT  890

seq1  GTTCAGAGCTGAGTGTCAAGACTCTTCTATCTGCTTTTCATTTTAAATCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGCTGAGTGTCAAGACTCTTCTATCTGCTTTTCATTTTAAATCT  940

seq1  ACTCTTGAGTTCTAAAGGCTTTGAACAGCTGTGGGTGTGTGGCCAGGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGAGTTCTAAAGGCTTTGAACAGCTGTGGGTGTGTGGCCAGGACA  990

seq1  CTAAGTTTAACTGCAGACATGAACTTTGAACTTTCACCTCTTCTCATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTAACTGCAGACATGAACTTTGAACTTTCACCTCTTCTCATTTT  1040

seq1  TAGGAATTATTGCTTTTATACCTTCCAGTCACAACTTTTTCTTTTTTTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTATTGCTTTTATACCTTCCAGTCACAACTTTTTCTTTTTTTCT  1090

seq1  TTTTTAATGTTGAATGTGCTCAAAGTTAGGATAATTAGAAGAAAAGAGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGTTGAATGTGCTCAAAGTTAGGATAATTAGAAGAAAAGAGAA  1140

seq1  AAGAGAATTC  1158
      ||||||||||
seq2  AAGAGAATTC  1150

seq1: chr8_55101633_55102738
seq2: B6Ng01-016K19.g_70_1174

seq1  GAATTCTGTAGCTAAAAACTGGGGCATACTTCACAGACTGGTGGAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCTAAAAACTGGGGCATACTTCACAGACTGGTGGAGCACT  50

seq1  AAGCAGAGTTCTGAGGGCTGATACTTTGAAGTGTCTACTAGTTTCACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGTTCTGAGGGCTGATACTTTGAAGTGTCTACTAGTTTCACACT  100

seq1  GTATGAAAAACCTAACATTGTTTATATTGGGAATTAATATTATGTTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAAACCTAACATTGTTTATATTGGGAATTAATATTATGTTATTA  150

seq1  TCCAAGATGTGCTACTACTGTAGCTGTAAATTTCTCTGATACTTTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATGTGCTACTACTGTAGCTGTAAATTTCTCTGATACTTTTTTTA  200

seq1  TGCTATGGTTGGAAACTGTACAAGAAAAAATAAGTTTACTTGCCTTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGTTGGAAACTGTACAAGAAAAAATAAGTTTACTTGCCTTGGAG  250

seq1  TTTTTGTACTTAAAAATCCAATTATTTAGACAGAGATGTACAAGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTACTTAAAAATCCAATTATTTAGACAGAGATGTACAAGTGAAAA  300

seq1  TGAGGAAAAAAGAGTGTTAGAACACAGAACTTGAACTGATAAGTAATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAAAAGAGTGTTAGAACACAGAACTTGAACTGATAAGTAATTCT  350

seq1  AGAAAAACTCTTAATAGAGACTAAATAGAGGGGATTAAAAGAAATCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTCTTAATAGAGACTAAATAGAGGGGATTAAAAGAAATCAGAT  400

seq1  CTCCCTGAGAAAAGTCTTTCTCTTTTAGATAATTAAATAGTCTTTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGAGAAAAGTCTTTCTCTTTTAGATAATTAAATAGTCTTTTAAAT  450

seq1  GACTTTATTTAAAACCTGAGCTTCCAAGGCTGAGCACTTGCCTTCACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATTTAAAACCTGAGCTTCCAAGGCTGAGCACTTGCCTTCACATC  500

seq1  ATCTTATGTTCATTAACTTTAGAAAATCTTGGGGAAGGCATGCCAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGTTCATTAACTTTAGAAAATCTTGGGGAAGGCATGCCAAAGAA  550

seq1  ACAATTAGTTCACAGCCTGCTACACTGAGAGACGGAGAGTGGCTGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGTTCACAGCCTGCTACACTGAGAGACGGAGAGTGGCTGAGCTG  600

seq1  ATGTGATCTTCATCGTGGAAAATGAACTCTGGACTTGAGTTGTTTGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCTTCATCGTGGAAAATGAACTCTGGACTTGAGTTGTTTGTGAA  650

seq1  TATTTTGTTTATCCCTAATCAATCCATTTTCATGGAAAATTCATAAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTATCCCTAATCAATCCATTTTCATGGAAAATTCATAAAGCT  700

seq1  TAGAAATTGTCATTTATCTTAATACTGCAGACTGACAAGTCAATTAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTGTCATTTATCTTAATACTGCAGACTGACAAGTCAATTAAGGA  750

seq1  AACTGAATTTGTTTGCTTATTACATTGAACAGTAAGCACTGGTTTCTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATTTGTTTGCTTATTACATTGAACAGTAAGCACTGGTTTCTCAA  800

seq1  TCTTAGGAAATTAGCATCTTTCTCTAACCTCCTGAGGGAAGCTGCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGAAATTAGCATCTTTCTCTAACCTCCTGAGGGAAGCTGCAGGAA  850

seq1  GATTGAAAATGAGAGCCAATTTCAGTGTATGTTTCCTGAAACAGTGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAATGAGAGCCAATTTCAGTGTATGTTTCCTGAAACAGTGCTCT  900

seq1  ACTAATTTTGCTATGGTAACAAAACCCTATTAATTTTCTAACAGACATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTGCTATGGTAACAAAACCCTATTAATTTTCTAACAGACATTA  950

seq1  GGTATTAAAACATTTGAGATTTATCAGAAATGACCTTAAAACCTCTTCAA  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTATTAAAACATTTGAGATTTATCAGAAATGACCTTAAAACCTCTTCAA  999

seq1  TGTATTGAATCCGTTTGAAACTATGTATAT-GAGACCAAGTTCAGGAGAC  1049
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TGTATTGAATCCGTTTGAAACTATGTATATGGAGACCAAGTTCA-GAGAC  1048

seq1  TTCTCAGTGAATTCTCCTTGACTGTTCGATTAATTGAT-GGATGGATGGA  1098
      ||||||||||||||||||||||||||||| | |||||| ||||| |||||
seq2  TTCTCAGTGAATTCTCCTTGACTGTTCGAAT-ATTGATGGGATGAATGGA  1097

seq1  AGGAATGA  1106
      ||||||||
seq2  AGGAATGA  1105