BAC Information

Click to search

BAC

Clone NameB6Ng01-017J14
Chromosome8 (Build37)
Map Location 89,011,892 - 89,148,538
singlet/doubletdoublet
Overlap geneAbcc12, Lonp2
Upstream geneGpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneSiah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J14.bB6Ng01-017J14.g
ACCDH851240DH851241
length840894
definitionDH851240|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J14, 5' end.DH851241|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,147,697 - 89,148,538)(89,011,892 - 89,012,785)
sequence
gaattcacatcagataagcaccagcaacaggcagcaaatgaactgcacag
agtttccacccgtgtcaggcattgctccgtgactgatccggctcactaac
ggtcactggcgaaaagcgtccctcccacttttcacgctggggagacttga
gccacaactccgctcacaggccgccggggcgcgagtcccggagggcctcc
ctccgagtgcccggcgggcctacctgtgcaatggtggcaggtcctgcgtg
tcgctggccgggtcgggtgtgttggggatgactcctagaatggtgctctg
caacgacgtgcccttgagcaagcggctccgcaccagctgcaagttgcggg
ccgtgtccacacttgtgcgcatagtggagccaggcagcaacacactctcg
tgggtcaacagcagcggaaggcggctggggatctggatggggctcacgga
ggacatggccacggtcgtcaacaccagaggtgtcaggaggactcccaagt
acgaactctacacttccttcgccgaacgcaccgcagccgtcactcgacgg
cccgcccccaggcctgagtgccgccgcttccggcaccgccccttccccag
gctccggtccccaggcctgccgccgcttccggccccgccccttctccagg
ctcccagacttctgcccggacgcttcggactcgcccccgggccatgtgct
gctgtttccgggcccgcccacaacccttccggaggccgcagcggctaagc
cctcccggtctgtcactctcccccccccccccccccccaagctaaagcgt
atggcttcttgctcctcccctagacccaacccctcaattt
gaattcacactccattcaacttgagctgctgtgacagaattaaccctcct
gctttgagtctgttggaggaagtggtaccaaccccctcacacttcgatac
tgacaggaaaagatgctttagaaatgagtgattagtgggagagtcaacat
ctgagagaaatggaaggtggcaggggacctttcctcaaccagtcagctaa
agcaagactgattccaggcctgggaagtattcaagcgatgtagtaatgcc
tgcaatatttcaaaataggatggtttttgtagtgggaaaatttgaaatat
gctctgccgtcaaatcacaggcaattaataaaggtggttgaggatatgaa
gggagaaatcagccatgaaatactggctcaaacccacatttggattctag
acaccagcagcatatagcaccctctgaatttcaacatggtctgggagtct
ttgcctctagaaggacatggagagtgtttctggaatgccgcatggaattg
tcccaggaaacctctgtgatagtccatagcaggttcaaagaatcctttct
gggcacaccacatgtttgggcctccctttgtgtcacatcattttatatga
gacgggatgggatgtttctaaggaaaactcttctaaccttttctgttgtc
ctccccagtactgagcatctatgctggaatggcccctgcccctccaaggg
ggcgttgcatggcagacagttctttaaactcaaaacccagagaaaagagg
aggcaggggaaataaaagaagtcagagggaagagcttagaatgcttgggg
aagtgagaaaaatgattgagagagagagaaaaaaaaggaatgtctggagt
ggctgaaggtcaatgtgctcttgggtttggaaaatatacgtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89147697_89148538
seq2: B6Ng01-017J14.b_41_880 (reverse)

seq1  AAATTGAGGGGTTTGGGTCTAGGGGCGGAGCCAGAAGCCGCTACGCTTTA  50
      ||||||||||| ||||||||||||| ||||| |||||||  |||||||||
seq2  AAATTGAGGGG-TTGGGTCTAGGGGAGGAGCAAGAAGCC-ATACGCTTTA  48

seq1  GCTTTGGGGGGGGGGGGGGGGGGAGAGTGACAGACC-GGAAGGCTTAGCC  99
      |||| ||||||||||||||||||||||||||||||| ||| |||||||||
seq2  GCTTGGGGGGGGGGGGGGGGGGGAGAGTGACAGACCGGGAGGGCTTAGCC  98

seq1  GCTGCGGCCTCCGGAAGGGTTGTGGGCGGGCCCGGAAACAGCAGCACATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGCCTCCGGAAGGGTTGTGGGCGGGCCCGGAAACAGCAGCACATG  148

seq1  GCCCGGGGGCGAGTCCGAAGCGTCCGGGCAGAAGTCTGGGAGCCTGGAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGGGCGAGTCCGAAGCGTCCGGGCAGAAGTCTGGGAGCCTGGAGA  198

seq1  AGGGGCGGGGCCGGAAGCGGCGGCAGGCCTGGGGACCGGAGCCTGGGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGGGGCCGGAAGCGGCGGCAGGCCTGGGGACCGGAGCCTGGGGAA  248

seq1  GGGGCGGTGCCGGAAGCGGCGGCACTCAGGCCTGGGGGCGGGCCGTCGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGTGCCGGAAGCGGCGGCACTCAGGCCTGGGGGCGGGCCGTCGAG  298

seq1  TGACGGCTGCGGTGCGTTCGGCGAAGGAAGTGTAGAGTTCGTACTTGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGCTGCGGTGCGTTCGGCGAAGGAAGTGTAGAGTTCGTACTTGGGA  348

seq1  GTCCTCCTGACACCTCTGGTGTTGACGACCAGTGGCCATGTCCTCCGTGA  399
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCCTCCTGACACCTCTGGTGTTGACGACC-GTGGCCATGTCCTCCGTGA  397

seq1  GCCCCATCCAGATCCCCAGCCGCCTTCCGCTGCTGTTGACCCACGAGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATCCAGATCCCCAGCCGCCTTCCGCTGCTGTTGACCCACGAGAGT  447

seq1  GTGTTGCTGCCTGGCTCCACTATGCGCACAAGTGTGGACACGGCCCGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTGCCTGGCTCCACTATGCGCACAAGTGTGGACACGGCCCGCAA  497

seq1  CTTGCAGCTGGTGCGGAGCCGCTTGCTCAAGGGCACGTCGTTGCAGAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGCTGGTGCGGAGCCGCTTGCTCAAGGGCACGTCGTTGCAGAGCA  547

seq1  CCATTCTAGGAGTCATCCCCAACACACCCGACCCGGCCAGCGACACGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAGGAGTCATCCCCAACACACCCGACCCGGCCAGCGACACGCAG  597

seq1  GACCTGCCACCATTGCACAGGTAGGCCCGCCGGGCACTCGGAGGGAGGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCACCATTGCACAGGTAGGCCCGCCGGGCACTCGGAGGGAGGCC  647

seq1  CTCCGGGACTCGCGCCCCGGCGGCCTGTGAGCGGAGTTGTGGCTCAAGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGGACTCGCGCCCCGGCGGCCTGTGAGCGGAGTTGTGGCTCAAGTC  697

seq1  TCCCCAGCGTGAAAAGTGGGAGGGACGCTTTTCGCCAGTGACCGTTAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCGTGAAAAGTGGGAGGGACGCTTTTCGCCAGTGACCGTTAGTG  747

seq1  AGCCGGATCAGTCACGGAGCAATGCCTGACACGGGTGGAAACTCTGTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGATCAGTCACGGAGCAATGCCTGACACGGGTGGAAACTCTGTGCA  797

seq1  GTTCATTTGCTGCCTGTTGCTGGTGCTTATCTGATGTGAATTC  842
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTGCTGCCTGTTGCTGGTGCTTATCTGATGTGAATTC  840

seq1: chr8_89011892_89012785
seq2: B6Ng01-017J14.g_66_959

seq1  GAATTCACACTCCATTCAACTTGAGCTGCTGTGACAGAATTAACCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCCATTCAACTTGAGCTGCTGTGACAGAATTAACCCTCCT  50

seq1  GCTTTGAGTCTGTTGGAGGAAGTGGTACCAACCCCCTCACACTTCGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGTCTGTTGGAGGAAGTGGTACCAACCCCCTCACACTTCGATAC  100

seq1  TGACAGGAAAAGATGCTTTAGAAATGAGTGATTAGTGGGAGAGTCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAAAGATGCTTTAGAAATGAGTGATTAGTGGGAGAGTCAACAT  150

seq1  CTGAGAGAAATGGAAGGTGGCAGGGGACCTTTCCTCAACCAGTCAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAAATGGAAGGTGGCAGGGGACCTTTCCTCAACCAGTCAGCTAA  200

seq1  AGCAAGACTGATTCCAGGCCTGGGAAGTATTCAAGCGATGTAGTAATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACTGATTCCAGGCCTGGGAAGTATTCAAGCGATGTAGTAATGCC  250

seq1  TGCAATATTTCAAAATAGGATGGTTTTTGTAGTGGGAAAATTTGAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTTCAAAATAGGATGGTTTTTGTAGTGGGAAAATTTGAAATAT  300

seq1  GCTCTGCCGTCAAATCACAGGCAATTAATAAAGGTGGTTGAGGATATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCGTCAAATCACAGGCAATTAATAAAGGTGGTTGAGGATATGAA  350

seq1  GGGAGAAATCAGCCATGAAATACTGGCTCAAACCCACATTTGGATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAATCAGCCATGAAATACTGGCTCAAACCCACATTTGGATTCTAG  400

seq1  ACACCAGCAGCATATAGCACCCTCTGAATTTCAACATGGTCTGGGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCAGCATATAGCACCCTCTGAATTTCAACATGGTCTGGGAGTCT  450

seq1  TTGCCTCTAGAAGGACATGGAGAGTGTTTCTGGAATGCCGCATGGAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTAGAAGGACATGGAGAGTGTTTCTGGAATGCCGCATGGAATTG  500

seq1  TCCCAGGAAACCTCTGTGATAGTCCATAGCAGGTTCAAAGAATCCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAAACCTCTGTGATAGTCCATAGCAGGTTCAAAGAATCCTTTCT  550

seq1  GGGCACACCACATGTTTGGGCCTCCCTTTGTGTCACATCATTTTATATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACCACATGTTTGGGCCTCCCTTTGTGTCACATCATTTTATATGA  600

seq1  GACGGGATGGGATGTTTCTAAGGAAAACTCTTCTAACCTTTTCTGTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGATGGGATGTTTCTAAGGAAAACTCTTCTAACCTTTTCTGTTGTC  650

seq1  CTCCCCAGTACTGAGCATCTATGCTGGAATGGCCCCTGCCCCTCCAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGTACTGAGCATCTATGCTGGAATGGCCCCTGCCCCTCCAAGGG  700

seq1  GGCGTTGCATGGCAGACAGTTCTTTAAACTCAAAACCCAGAGAAAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTGCATGGCAGACAGTTCTTTAAACTCAAAACCCAGAGAAAAGAGG  750

seq1  AGGCAGGGGAAATAAAAGAAGTCAGAGGGAAGAGCTTAGAATGC-TGGGG  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGCAGGGGAAATAAAAGAAGTCAGAGGGAAGAGCTTAGAATGCTTGGGG  800

seq1  AAGTGAGAAAAATGAATGAGAGAGAGAG-AAAAAAAGGAATGTTCTGGAG  848
      ||||||||||||||| |||||||||||| ||||||||||||| |||||||
seq2  AAGTGAGAAAAATGATTGAGAGAGAGAGAAAAAAAAGGAATG-TCTGGAG  849

seq1  TGGCTG-AGGTCTATGTGCTCCTTGTGTTTGGAAAAATATACGTCAA  894
      |||||| ||||| ||||||| |||| |||||| ||||||||||||||
seq2  TGGCTGAAGGTCAATGTGCT-CTTGGGTTTGG-AAAATATACGTCAA  894