BAC Information

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BAC

Clone NameB6Ng01-018J19
Chromosome8 (Build37)
Map Location 107,725,531 - 107,867,627
singlet/doubletdoublet
Overlap geneCbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1
Upstream geneBean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408
Downstream geneSlc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018J19.bB6Ng01-018J19.g
ACCDH851961DH851962
length408950
definitionDH851961|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J19, 5' end.DH851962|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,867,214 - 107,867,627)(107,725,531 - 107,726,484)
sequence
aatatgcgtgtcatacatcaggcttgtgacgctcctcctctgggtgctgc
aagtttaggtgtgcaccaccagacctgactgattcactgtatttctgagc
tgctcacttgtcaaactcacaaacctataggcagcctagagtgaggcgtg
gtggcttgcacctactaccccagcatttggatagctaagtcaggaagctt
gccccgcatttaaagccagtatggattgcagtaagagactcctcgatcca
gaaaggaagaggggaggaaagggaacaggagaggtgaaagcagaaaagga
aaactggacattgtaagccaggcatggtggtatatattatatactatgcg
tgttatagagtgtgtgtatggatgtatgtataggctgtatgtctgtgcgt
atgtgtgt
gaattccagaccttcagaagagcacgcgatgatgcttttacccactgagc
catctcaccagcctccattgggtcttctgctgttacctcattggcagaag
tgagttacactgccaacttttgtactgttgtagggaagtgaatattgatg
gctgcttttttattttctttttgcggggagggtattctgtatcttttagt
ttctgcaaatcatcaaaaatataagtgcatactaagttgtacgtgattgg
caaagcttgaacattttatgctgaagagagtaacagtaagggagcattta
aggttaggagtcattgtgatcacattgtgctttagctatacacacacaca
cggatcgcaggggcagctctgaggtgccagaacagaatggaacaggggcg
gtgtttgggggacttaaaataatcgagtttacagctctttgggttccaag
ttagaaaagtgtttatagaaatgaagattccaaaaatataagcagcaaat
aggtagagtgctactttagtttacagaggtaagaagggttacaaagatgg
ttcagattcctgttagaatgaggaggcacatgtcggtaatcccagtgctg
gagaagttaaggcaggaggattatgtttcagaccagccaaggctataacg
agaccctcactccaaaataaaagtacctctgaaattagtgcgggatggag
gggattgattaatactgatattttaagaattactcttcggttggattctt
tccaaaaaaaccccaaattcaattttttttttttacataaatcaaaataa
ttatttcatgtaccctgacagcaggaagatgcattacacaacaggccttt
gaagaggctcgaagaatactcgagaatttgaggatagagacaggtctcac
cggagaaatggagggtgagagtttcacagctgctggcagtactggttagt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107867214_107867627
seq2: B6Ng01-018J19.b_47_460 (reverse)

seq1  ACACACATACACACAGACATACAGCCTATACATACATCCATACACACACT  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACGCACAGACATACAGCCTATACATACATCCATACACACACT  50

seq1  CTATAACACGCATAGTATATAATATATACCACCATGCCTGGCTTACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACACGCATAGTATATAATATATACCACCATGCCTGGCTTACAATG  100

seq1  TCCAGTTTTCCTTTTCTGCTTTCACCTCTCCTGTTCCCTTTCCTCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTCCTTTTCTGCTTTCACCTCTCCTGTTCCCTTTCCTCCCCTC  150

seq1  TTCCTTTCTGGATCGAGGAGTCTCTTACTGCAATCCATACTGGCTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTGGATCGAGGAGTCTCTTACTGCAATCCATACTGGCTTTAAA  200

seq1  TGCGGGGCAAGCTTCCTGACTTAGCTATCCAAATGCTGGGGTAGTAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGCAAGCTTCCTGACTTAGCTATCCAAATGCTGGGGTAGTAGGTG  250

seq1  CAAGCCACCACGCCTCACTCTAGGCTGCCTATAGGTTTGTGAGTTTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACCACGCCTCACTCTAGGCTGCCTATAGGTTTGTGAGTTTGACA  300

seq1  AGTGAGCAGCTCAGAAATACAGTGAATCAGTCAGGTCTGGTGGTGCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAGCTCAGAAATACAGTGAATCAGTCAGGTCTGGTGGTGCACAC  350

seq1  CTAAACTTGCAGCACCCAGAGGAGGAGCGTCACAAGCCTGATGTATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTGCAGCACCCAGAGGAGGAGCGTCACAAGCCTGATGTATGACA  400

seq1  CGCATATTGAATTC  414
      ||||||||||||||
seq2  CGCATATTGAATTC  414

seq1: chr8_107725531_107726484
seq2: B6Ng01-018J19.g_68_1017

seq1  GAATTCCAGACCTTCAGAAGAGCACGCGATGATGCTTTTACCCACTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCTTCAGAAGAGCACGCGATGATGCTTTTACCCACTGAGC  50

seq1  CATCTCACCAGCCTCCATTGGGTCTTCTGCTGTTACCTCATTGGCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACCAGCCTCCATTGGGTCTTCTGCTGTTACCTCATTGGCAGAAG  100

seq1  TGAGTTACACTGCCAACTTTTGTACTGTTGTAGGGAAGTGAATATTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACACTGCCAACTTTTGTACTGTTGTAGGGAAGTGAATATTGATG  150

seq1  GCTGCTTTTTTATTTTCTTTTTGCGGGGAGGGTATTCTGTATCTTTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTTTTATTTTCTTTTTGCGGGGAGGGTATTCTGTATCTTTTAGT  200

seq1  TTCTGCAAATCATCAAAAATATAAGTGCATACTAAGTTGTACGTGATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAATCATCAAAAATATAAGTGCATACTAAGTTGTACGTGATTGG  250

seq1  CAAAGCTTGAACATTTTATGCTGAAGAGAGTAACAGTAAGGGAGCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTGAACATTTTATGCTGAAGAGAGTAACAGTAAGGGAGCATTTA  300

seq1  AGGTTAGGAGTCATTGTGATCACATTGTGCTTTAGCTATACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGAGTCATTGTGATCACATTGTGCTTTAGCTATACACACACACA  350

seq1  CGGATCGCAGGGGCAGCTCTGAGGTGCCAGAACAGAATGGAACAGGGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCGCAGGGGCAGCTCTGAGGTGCCAGAACAGAATGGAACAGGGGCG  400

seq1  GTGTTTGGGGGACTTAAAATAATCGAGTTTACAGCTCTTTGGGTTCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGGGGACTTAAAATAATCGAGTTTACAGCTCTTTGGGTTCCAAG  450

seq1  TTAGAAAAGTGTTTATAGAAATGAAGATTCCAAAAATATAAGCAGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGTGTTTATAGAAATGAAGATTCCAAAAATATAAGCAGCAAAT  500

seq1  AGGTAGAGTGCTACTTTAGTTTACAGAGGTAAGAAGGGTTACAAAGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGTGCTACTTTAGTTTACAGAGGTAAGAAGGGTTACAAAGATGG  550

seq1  TTCAGATTCCTGTTAGAATGAGGAGGCACATGTCGGTAATCCCAGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCCTGTTAGAATGAGGAGGCACATGTCGGTAATCCCAGTGCTG  600

seq1  GAGAAGTTAAGGCAGGAGGATTATGTTTCAGACCAGCCAAGGCTATAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTAAGGCAGGAGGATTATGTTTCAGACCAGCCAAGGCTATAACG  650

seq1  AGACCCTCACTCCAAAATAAAAGTACCTCTGAAATTAGTGCGGGATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCACTCCAAAATAAAAGTACCTCTGAAATTAGTGCGGGATGGAG  700

seq1  GGGATTGATTAATACTGATATTTTAAGAATTACTCTTCGGTTGGATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGATTAATACTGATATTTTAAGAATTACTCTTCGGTTGGATTCTT  750

seq1  TCCAAAAAATCCCCAAATTCAATTTTTTTTTTTTACATAAATCAAAATAA  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAAACCCCAAATTCAATTTTTTTTTTTTACATAAATCAAAATAA  800

seq1  TTATTTCATGTACCCTGACAGCAGGAAGATGCATTAGCACAACAGGCCTT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATTTCATGTACCCTGACAGCAGGAAGATGCATTA-CACAACAGGCCTT  849

seq1  TGAAGAGGCTCGAAGAAGAACTCGAGAATTTGAGGATAGAGACAGGTCTC  900
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  TGAAGAGGCTCGAAGAA-TACTCGAGAATTTGAGGATAGAGACAGGTCTC  898

seq1  ACCGGGAGGAAATGGA-GGTGAGAGTTTCACAGCTGCTGGCAGTAACTGG  949
      |||||   |||||||| ||||||||||||||||||||||||||| |||||
seq2  ACCGG--AGAAATGGAGGGTGAGAGTTTCACAGCTGCTGGCAGT-ACTGG  945

seq1  TTAGT  954
      |||||
seq2  TTAGT  950