BAC Information

Click to search

BAC

Clone NameB6Ng01-020M10
Chromosome8 (Build37)
Map Location 129,445,638 - 129,569,467
singlet/doubletdoublet
Overlap geneTomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1
Upstream geneBC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
Downstream genePard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020M10.bB6Ng01-020M10.g
ACCDH853474DH853475
length1761,089
definitionDH853474|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M10, 5' end.DH853475|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,569,292 - 129,569,467)(129,445,638 - 129,446,738)
sequence
aacatttcttgtctttcacaatcatgacctttgtgagtggtattaagtgt
cctcaatctgtactcgctcttcaaagtataatgtctcttaaatatagatt
cacttccataagcatttttgaaaaattaaacgcgctgttatcatggtact
gcttcgggggcgggggagggggaggg
gaattccttgctgcgcaagcacgagttcaggtccccagaacccattttga
gaaagtgggggtgggagagcatggcatggtgttatgtgaacatcctggtg
ctaaggaggcagaggacaagaggggctcctgggatgccagtgtagctgaa
cagtgagctccaggcttggtgatattctagaaaaataaggtgaagaggaa
cagaagacactcaacatggatctctggccttcatatatacaaggacacac
atgcatgtacacaagcacacctgcacacaatacacacacaccacagaaga
cttagaactcagcagtcctatgtttaggtaactgagagaggaatgaggag
ggaggggatgcctaacggttcaagtcctgacgctcttgtatctctgagga
ggtggcctcgcctgaggaaacaggaagcagggcaagatccaggagatcca
aagtcagctctgaggcctaaatatgcgacccggtagggcaggacttcaag
cctcattccctatggtggccagctttgattgtcaacttggaacaacctag
aatcatctggaaggagtctcagtgggggactgtgtgcgtcgggttgtcct
gtttgtgggacattgtcttaatctatgcaggaagacccagcccactgtgg
gcgacaccattcctaggcagaggttcctaaactgtatactaatagagaaa
cctagcaggaacaaacaagaaagcaagaatatatacatttatttctctcc
attcttgactgtgggtgatatatgactggctgtgtgaagttctggcgttg
atttcttaccatgatgggctgttacttggggtctgaaactaaataaaccc
tttctcctcactgcaacagaaatggcaccaggatacttcctttcccacac
acctctgttcacctcacatttgcctttttgaacatgggtagcataaccac
gtttggagtgggttcctacggtccatgcttaagacccactcctgccagct
gcaatcactgttcatcaagtcatgtactcagacctgggtacctgtggctg
gacagaaagtgatgaatgtctcatagaaagaaagccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_129569292_129569467
seq2: B6Ng01-020M10.b_47_222 (reverse)

seq1  CCCTCCCCCTCCCCCGCCCCCGAAGCAGTACCATGATAACAGCGCGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCTCCCCCGCCCCCGAAGCAGTACCATGATAACAGCGCGTTTA  50

seq1  ATTTTTCAAAAATGCTTATGGAAGTGAATCTATATTTAAGAGACATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAAAATGCTTATGGAAGTGAATCTATATTTAAGAGACATTATA  100

seq1  CTTTGAAGAGCGAGTACAGATTGAGGACACTTAATACCACTCACAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGAGCGAGTACAGATTGAGGACACTTAATACCACTCACAAAGGT  150

seq1  CATGATTGTGAAAGACAAGAAATGTT  176
      ||||||||||||||||||||||||||
seq2  CATGATTGTGAAAGACAAGAAATGTT  176

seq1: chr8_129445638_129446738
seq2: B6Ng01-020M10.g_66_1154

seq1  GAATTCCTTGCTGCGCAAGCACGAGTTCAGGTCCCCAGAACCCATTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCTGCGCAAGCACGAGTTCAGGTCCCCAGAACCCATTTTGA  50

seq1  GAAAGTGGGGGTGGGAGAGCATGGCATGGTGTTATGTGAACATCCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGGGTGGGAGAGCATGGCATGGTGTTATGTGAACATCCTGGTG  100

seq1  CTAAGGAGGCAGAGGACAAGAGGGGCTCCTGGGATGCCAGTGTAGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGGCAGAGGACAAGAGGGGCTCCTGGGATGCCAGTGTAGCTGAA  150

seq1  CAGTGAGCTCCAGGCTTGGTGATATTCTAGAAAAATAAGGTGAAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTCCAGGCTTGGTGATATTCTAGAAAAATAAGGTGAAGAGGAA  200

seq1  CAGAAGACACTCAACATGGATCTCTGGCCTTCATATATACAAGGACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACACTCAACATGGATCTCTGGCCTTCATATATACAAGGACACAC  250

seq1  ATGCATGTACACAAGCACACCTGCACACAATACACACACACCACAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTACACAAGCACACCTGCACACAATACACACACACCACAGAAGA  300

seq1  CTTAGAACTCAGCAGTCCTATGTTTAGGTAACTGAGAGAGGAATGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACTCAGCAGTCCTATGTTTAGGTAACTGAGAGAGGAATGAGGAG  350

seq1  GGAGGGGATGCCTAACGGTTCAAGTCCTGACGCTCTTGTATCTCTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGATGCCTAACGGTTCAAGTCCTGACGCTCTTGTATCTCTGAGGA  400

seq1  GGTGGCCTCGCCTGAGGAAACAGGAAGCAGGGCAAGATCCAGGAGATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTCGCCTGAGGAAACAGGAAGCAGGGCAAGATCCAGGAGATCCA  450

seq1  AAGTCAGCTCTGAGGCCTAAATATGCGACCCGGTAGGGCAGGACTTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCTCTGAGGCCTAAATATGCGACCCGGTAGGGCAGGACTTCAAG  500

seq1  CCTCATTCCCTATGGTGGCCAGCTTTGATTGTCAACTTGGAACAACCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCCCTATGGTGGCCAGCTTTGATTGTCAACTTGGAACAACCTAG  550

seq1  AATCATCTGGAAGGAGTCTCAGTGGGGGACTGTGTGCGTCGGGTTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTGGAAGGAGTCTCAGTGGGGGACTGTGTGCGTCGGGTTGTCCT  600

seq1  GTTTGTGGGACATTGTCTTAATCTATGCAGGAAGACCCAGCCCACTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGGACATTGTCTTAATCTATGCAGGAAGACCCAGCCCACTGTGG  650

seq1  GCGACACCATTCCTAGGCAGAGGTTCCTAAACTGTATACTAATAGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACACCATTCCTAGGCAGAGGTTCCTAAACTGTATACTAATAGAGAAA  700

seq1  CCTAGCAGGAACAAACAAGAAAGCAAGAATATATACATTTATTTCTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAGGAACAAACAAGAAAGCAAGAATATATACATTTATTTCTCTCC  750

seq1  ATTCTTGACTGTGGGTGATATATGACTGGCTGTGTGAAGTTCTGGCGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGACTGTGGGTGATATATGACTGGCTGTGTGAAGTTCTGGCGTTG  800

seq1  ATTTCTTACCAATGATGGGCTGTTACTTGGGGTCTGAAAACTAAATAAAC  850
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  ATTTCTTACC-ATGATGGGCTGTTACTTGGGGTCTG-AAACTAAATAAAC  848

seq1  CCTTTCTCCTCACTGCAACAGAAATGGCACCAGGATACTTCCTTTCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCTCACTGCAACAGAAATGGCACCAGGATACTTCCTTTCCCAC  898

seq1  ACACCTCTGTTCACCTCACATTTGCCTTTTTTGAACATTGGGTAGCATAA  950
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  ACACCTCTGTTCACCTCACATTTGCC-TTTTTGAACA-TGGGTAGCATAA  946

seq1  CCACGTTTGGAGTGGGTTCCTACGGTCCCATGCTTTAGACACACTCCTGC  1000
      |||||||||||||||||||||||||| |||||||| |||| |||||||||
seq2  CCACGTTTGGAGTGGGTTCCTACGGT-CCATGCTTAAGACCCACTCCTGC  995

seq1  CAGGCCTGCAGAGTCACTG-TCATCAAGTCATGTAACTCAAGACCTGGGT  1049
      |||  ||||  | |||||| |||||||||||||| |||| ||||||||||
seq2  CAG--CTGC--AATCACTGTTCATCAAGTCATGT-ACTC-AGACCTGGGT  1039

seq1  CACTGTTGGCTGGACAGAAAGTGGATGAATGTCCTATAGAAAGAAGGCCA  1099
        ||| |||||||||||||||| ||||||||||  |||||||||| ||||
seq2  ACCTG-TGGCTGGACAGAAAGT-GATGAATGTCTCATAGAAAGAAAGCCA  1087

seq1  TT  1101
      ||
seq2  TT  1089