BAC Information

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BAC

Clone NameB6Ng01-024G16
Chromosome8 (Build37)
Map Location 126,187,354 - 126,336,281
singlet/doubletdoublet
Overlap geneRhou, LOC100042484, LOC100042490, Rab4a
Upstream geneCbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1
Downstream gene1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024G16.bB6Ng01-024G16.g
ACCDH856059DH856060
length9281,028
definitionDH856059|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G16, 5' end.DH856060|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,187,354 - 126,188,284)(126,335,255 - 126,336,281)
sequence
gaattctaaacgcatgtgcctgggtgggacgtcaagtcagggttctcatc
aaagctgagaagtggctggaatgttcagcttggtgtctggggaggatcct
gtgagctatgtagagaggtggctcttcagcctgactcagtgtgggctgaa
cgaagtacctgcagaacacacggtagcaggctccaaaatcgtcacctcaa
gcatgcgtgcaagcaaacttccgagaactccgttttctgctcggcagacg
tgtgagcagctacccagaagtctcaagccaaaaggggagcctcgctcgct
ggctcctctgcaggtgccttatcgacctgtgctcttctcttttcccgtgt
caaagatgttggacaggatcttgtacttgaaacatactacaaatgagtta
ctatgaaataaattctgacctgtggaccgagctgctcttgcttattctac
tgaaaggatagaagctcagatatgccttggcctggacaggttcagaagct
tccctgtattcagggaaagtacctagtatcacactcactcagtacttcct
gtacctagtatcatactcagtacttcctgtacctagtatcacgatcactc
agtacttcctgtacctagtatcacactcagtacttcctgtacctagtatc
acgctcactcagtacggctgtgggctctggtcttgttctgatggttggca
ccctctgcatttgtttgtttgtttgtttgttttgttttccagataggttt
ctttgtataacctccctggctgtcttggacttgctttgtagaccaggctg
gcctcaaactcacagagatctgactgcgtctgctgccgagtgctgggata
aaggcatttgccaccacgcccggcttccctctgcatatttggggaggcca
ggttccgagtgcagacttcctggggtga
gaattcttgcttttgaaacaaggtctcactttgaagccctggctagacag
gagtctctatgtagatctggctggatctgcttgcttctgccctgggagtt
ctaagattaaaggctgtgccaacacacccagctccttagaactcgtagac
aagcttcaaaaaacaaaagcaaaaaacaaaacaacaacaacaaaaaaaga
gcaaaaaaaaacctaaaaccaaccaaccaccaacctataagtacaccatg
cttccttcccttatgtcctgttatataacatggttccttttcttttatct
tttttaaagacagggtttcacggagcccaggttaccctcctagctctact
tcagaggtgttggggtcattggcaatgcccatgacacccagttctaccct
gtaatatgtgtcttgtgtcattttatattttactgcacagttgcagtcac
caagtagcaaatgtcacatatccttcaaatgcacagaagacagtccatca
gcggaaacagatcccctcagatcgtctgagctctgcgggcaacaggcaca
cacggaatattcgcatacatccaggcaaatactcagacacacacacacaa
aaaaaaataaatcgtaacaaacaaacaaacaagcaaaattgtcccatctc
agaaattctgtcatggcaacaggggttaaggcaataggccaggactcggg
ccctccaaaggcttccaacataccaccctaactgggcagtgctctcctag
aattactgagaattgatcaaaacagaccagctcaagtttgaccactcccc
tcggagagcttcagagaagaaattccagaaacaattagccttttctcatt
ttcgaagaaattgttcagggttggaagatggctcaatagtttagaacact
tcctgcccgtccaggagaacagaggtcaattcaagtactagttacactgc
ctgtgacggcaggtccaggatatcagatgcacccactcatgtagcatttc
atacacacaacacagaccacacaaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_126187354_126188284
seq2: B6Ng01-024G16.b_29_955

seq1  GAATTCTAAACGCATGTGCCTGGGTGGGACGTCAAGTCAGGGTTCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACGCATGTGCCTGGGTGGGACGTCAAGTCAGGGTTCTCATC  50

seq1  AAAGCTGAGAAGTGGCTGGAATGTTCAGCTTGGTGTCTGGGGAGGATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGAAGTGGCTGGAATGTTCAGCTTGGTGTCTGGGGAGGATCCT  100

seq1  GTGAGCTATGTAGAGAGGTGGCTCTTCAGCCTGACTCAGTGTGGGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTATGTAGAGAGGTGGCTCTTCAGCCTGACTCAGTGTGGGCTGAA  150

seq1  CGAAGTACCTGCAGAACACACGGTAGCAGGCTCCAAAATCGTCACCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTACCTGCAGAACACACGGTAGCAGGCTCCAAAATCGTCACCTCAA  200

seq1  GCATGCGTGCAAGCAAACTTCCGAGAACTCCGTTTTCTGCTCGGCAGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCGTGCAAGCAAACTTCCGAGAACTCCGTTTTCTGCTCGGCAGACG  250

seq1  TGTGAGCAGCTACCCAGAAGTCTCAAGCCAAAAGGGGAGCCTCGCTCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCAGCTACCCAGAAGTCTCAAGCCAAAAGGGGAGCCTCGCTCGCT  300

seq1  GGCTCCTCTGCAGGTGCCTTATCGACCTGTGCTCTTCTCTTTTCCCGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCTGCAGGTGCCTTATCGACCTGTGCTCTTCTCTTTTCCCGTGT  350

seq1  CAAAGATGTTGGACAGGATCTTGTACTTGAAACATACTACAAATGAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGTTGGACAGGATCTTGTACTTGAAACATACTACAAATGAGTTA  400

seq1  CTATGAAATAAATTCTGACCTGTGGACCGAGCTGCTCTTGCTTATTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAATAAATTCTGACCTGTGGACCGAGCTGCTCTTGCTTATTCTAC  450

seq1  TGAAAGGATAGAAGCTCAGATATGCCTTGGCCTGGACAGGTTCAGAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGATAGAAGCTCAGATATGCCTTGGCCTGGACAGGTTCAGAAGCT  500

seq1  TCCCTGTATTCAGGGAAAGTACCTAGTATCACACTCACTCAGTACTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTATTCAGGGAAAGTACCTAGTATCACACTCACTCAGTACTTCCT  550

seq1  GTACCTAGTATCATACTCAGTACTTCCTGTACCTAGTATCACGATCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTAGTATCATACTCAGTACTTCCTGTACCTAGTATCACGATCACTC  600

seq1  AGTACTTCCTGTACCTAGTATCACACTCAGTACTTCCTGTACCTAGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCCTGTACCTAGTATCACACTCAGTACTTCCTGTACCTAGTATC  650

seq1  ACGCTCACTCAGTACGGCTGTGGGCTCTGGTCTTGTTCTGATGGTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCACTCAGTACGGCTGTGGGCTCTGGTCTTGTTCTGATGGTTGGCA  700

seq1  CCCTCTGCATTTGTTTGTTTGTTTGTTTGTTTTGTTTTCCAGATAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCATTTGTTTGTTTGTTTGTTTGTTTTGTTTTCCAGATAGGTTT  750

seq1  CTCTGTATAACCTCCCTGGCTGTCTTGGAACTTGCTTTGTAGACCAGGCT  800
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTGTATAACCTCCCTGGCTGTCTTGG-ACTTGCTTTGTAGACCAGGCT  799

seq1  GGCCTCAAACTCACAGAGATCTGACTGCGTCTGCTGCCCGAGTGCTGGGA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCCTCAAACTCACAGAGATCTGACTGCGTCTGCTG-CCGAGTGCTGGGA  848

seq1  TTAAAGGCATTTGCCACCACGCCCGGCTTCCCTCTGCATATTTTGGGAAG  900
       ||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  -TAAAGGCATTTGCCACCACGCCCGGCTTCCCTCTGCATA-TTTGGGGAG  896

seq1  GCCAGGTTACAGAGTGCAGAC-TCCAGGGGTG  931
      |||||||| | |||||||||| ||| ||||||
seq2  GCCAGGTT-CCGAGTGCAGACTTCCTGGGGTG  927

seq1: chr8_126335255_126336281
seq2: B6Ng01-024G16.g_67_1094 (reverse)

seq1  GTGTGTGTGT-GTGTGTG-TGTGTGTATGAATATGCTACATGTGTGGGTG  48
      |||| ||||| || |||| |||||||||||| |||||||||| |||||||
seq2  GTGTTTGTGTGGTCTGTGTTGTGTGTATGAA-ATGCTACATGAGTGGGTG  49

seq1  CATCTGATCTCCTGGACCTGGCGTCACAGGCAGTTGTGAACTAGGTAC-T  97
      |||||||| ||||||||||| |||||||||||| ||| ||||| |||| |
seq2  CATCTGATATCCTGGACCTGCCGTCACAGGCAG-TGT-AACTA-GTACTT  96

seq1  GGATTGAACTCTGGTTCT-CTGGACGGGCAGGAAGTGTTCTTAACTATTG  146
      | ||||| |||| ||||| |||||||||||||||||||||| ||||||||
seq2  GAATTGACCTCT-GTTCTCCTGGACGGGCAGGAAGTGTTCTAAACTATTG  145

seq1  AGCCATCTTTCCAACCCTGAAC-ATTTCTTCG-AAATGAGAAAAGGCTTA  194
      ||||||| |||||||||||||| ||||||||| ||||||||||||||| |
seq2  AGCCATC-TTCCAACCCTGAACAATTTCTTCGAAAATGAGAAAAGGCTAA  194

seq1  TTGTTTCTGGAATTTCTTCTCTGAAGCTCTCCGAGGGGAGTGGTCAAACT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTGGAATTTCTTCTCTGAAGCTCTCCGAGGGGAGTGGTCAAACT  244

seq1  TGAGCTGGTCTGTTTTGATC-ATTCTCAGTAATTCTAGGAGAGCACTGCC  293
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGCTGGTCTGTTTTGATCAATTCTCAGTAATTCTAGGAGAGCACTGCC  294

seq1  CAGTTAGGGTGGTTTGTTGGAAGCCTTTGGAGGGCCCGAGTCCTGGCCTA  343
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGGTGGTATGTTGGAAGCCTTTGGAGGGCCCGAGTCCTGGCCTA  344

seq1  TTGCCTTAACCCCTGTTGCCATGACAGAATTTCTGAGATGGGACAATTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTAACCCCTGTTGCCATGACAGAATTTCTGAGATGGGACAATTTT  394

seq1  GCTTGTTTGTTTGTTTGTTACGATTTATTTTTTTTTGTGTGTGTGTGTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTGTTTGTTTGTTACGATTTATTTTTTTTTGTGTGTGTGTGTCT  444

seq1  GAGTATTTGCCTGGATGTATGCGAATATTCCGTGTGTGCCTGTTGCCCGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTGCCTGGATGTATGCGAATATTCCGTGTGTGCCTGTTGCCCGC  494

seq1  AGAGCTCAGACGATCTGAGGGGATCTGTTTCCGCTGATGGACTGTCTTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGACGATCTGAGGGGATCTGTTTCCGCTGATGGACTGTCTTCT  544

seq1  GTGCATTTGAAGGATATGTGACATTTGCTACTTGGTGACTGCAACTGTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTGAAGGATATGTGACATTTGCTACTTGGTGACTGCAACTGTGC  594

seq1  AGTAAAATATAAAATGACACAAGACACATATTACAGGGTAGAACTGGGTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATATAAAATGACACAAGACACATATTACAGGGTAGAACTGGGTG  644

seq1  TCATGGGCATTGCCAATGACCCCAACACCTCTGAAGTAGAGCTAGGAGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCATTGCCAATGACCCCAACACCTCTGAAGTAGAGCTAGGAGGG  694

seq1  TAACCTGGGCTCCGTGAAACCCTGTCTTTAAAAAAGATAAAAGAAAAGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGGCTCCGTGAAACCCTGTCTTTAAAAAAGATAAAAGAAAAGGA  744

seq1  ACCATGTTATATAACAGGACATAAGGGAAGGAAGCATGGTGTACTTATAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTATATAACAGGACATAAGGGAAGGAAGCATGGTGTACTTATAG  794

seq1  GTTGGTGGTTGGTTGGTTTTAGGTTTTTTTTTGCTCTTTTTTTGTTGTTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGTTGGTTGGTTTTAGGTTTTTTTTTGCTCTTTTTTTGTTGTTG  844

seq1  TTGTTTTGTTTTTTGCTTTTGTTTTTTGAAGCTTGTCTACGAGTTCTAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTGCTTTTGTTTTTTGAAGCTTGTCTACGAGTTCTAAG  894

seq1  GAGCTGGGTGTGTTGGCACAGCCTTTAATCTTAGAACTCCCAGGGCAGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGTGTGTTGGCACAGCCTTTAATCTTAGAACTCCCAGGGCAGAA  944

seq1  GCAAGCAGATCCAGCCAGATCTACATAGAGACTCCTGTCTAGCCAGGGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGATCCAGCCAGATCTACATAGAGACTCCTGTCTAGCCAGGGCT  994

seq1  TCAAAGTGAGACCTTGTTTCAAAAGCAAGAATTC  1027
      ||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGAGACCTTGTTTCAAAAGCAAGAATTC  1028