BAC Information

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BAC

Clone NameB6Ng01-024M21
Chromosome8 (Build37)
Map Location 88,984,612 - 89,062,606
singlet/doubletdoublet
Overlap geneAbcc12
Upstream geneGpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneLonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024M21.bB6Ng01-024M21.g
ACCDH856329DH856330
length1,121902
definitionDH856329|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M21, 5' end.DH856330|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,061,477 - 89,062,606)(88,984,612 - 88,985,513)
sequence
gaattcttccagtcagcattgcctagcgtaaggcatgggggagcttatgt
gcagagagagataacaagctgtgttgtctccccgagtcctgaagagtttt
agaatgctcctgatatacaaagaccatggggtggcaggcagacttaataa
tgatgggcagtgccattatccctgtccacagattggagagcggggtgtca
acctctctgggggacagaggcagaggatcagcctggcccgtgctgtgtat
gctaatcgtcagctctacctgctggatgacccgctctcggctgtggatgc
ccacgtggggaagcatgtctttgaagaatgcattaagaagacactcaaag
ggaagacagttgtgctggttacccaccagttgcaggtgactgggatgtgc
gtggtccatgaggccttgggatgagtgcagcacttgatggtcaaagagac
tcctgttctgcctaaatatgccatttccaccagtaggtggctttacctga
acaggggattgagatggtaggagacactgatgagtcctgcagccatccct
agcttcctggtattgctacctgctcctctctgggtatgacttcctttggc
ttagtctttgggatcagtggggagacgacttttcctcccccattgggtag
attgtgtaggatcaattggctctgagatctgggccattggtgccaaggaa
atggggagccaggcatggacaagtcaggctctacccattctccagtaggg
acttgatgggcctgaggttgggggttccttgtctgagggtcatggaagct
ctgttttctttcctcacccagaaagtcatggctcttgtgatgagtggccc
agactccccagtcttcccctagcccaggaaaggctcctgagccaggacca
atgggcaacgcttcaggttcttctgccttcttagatcctgttccattcaa
acagtagtctccctcttggcttagaggtgaatctgctggagaagagaact
gggccttatgttagttgactggaggatttggcctgcatggtcacagacct
gttgatccatccacatacgggtctcgaatgctctggggaatcatgggccc
ttctcttaccaagaaaattca
gaattccaccttgctctagaattcttgcctagcttgtcttctaaattctt
gatggaacatgaatgtggttgcataaaagttcgtttctctctctggagaa
gaaaagaagaaatacctttcttacagttaacattctttgcaaggagagat
agagtggagagaaaaggaaaagcccattagatgtcagtgtcttggagggg
gggagctttttggtcacagtggattctctctcccccctccctctctctct
gaagtgtaatcattttttaaccatcacctctgctttctgttcactcagac
agcacacaggttccatgtacttcatttacatcgagtcttttaagcttagc
actatacctattagtgagatgctgtttcggttcccattgtatagatgaag
aaactgaggtaaaggtttgtagatatcctccagatgctacatttagcaaa
tggtcggtcatgtgaatagaagccccagtctaaatgcctggtagggcttc
tgaagttaaaagaggcttcccctcaaatagctagatataaagaagtttct
ttgatatccctgggaggaacctgttcttagcactaactgaactttccaca
gcacaggagcaccctgctaatccattgtctccattccctctggctggctt
cttgctgttgcagagacagaagacaaatccatgtgtctgggaccaagctg
aggacatgatttctgtatggggccactttgcctgtttgtgttactgcctg
gcctctaaggacacttaagtagagctgttttagcttgtcaccagctacca
cactcactcagtcaggatggggtgggggatagagcatgggttccttccat
cccatttggcgagaaccccagttagtgtcttgggaaccactggcactgca
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89061477_89062606
seq2: B6Ng01-024M21.b_46_1166 (reverse)

seq1  TGAATTATCTTGGGTAGAGAAGGGGCCCTAGATTCCCACCAAGCATTCAG  50
      |||||| ||||||  |||||| ||||||  ||||||| |  |||||||  
seq2  TGAATTTTCTTGGTAAGAGAA-GGGCCCATGATTCCC-CAGAGCATTCGA  48

seq1  AACCTGTATGTGGGATGGATTCAACAAGGTCTGTGACCATGCA-GCCAAA  99
       ||| |||||| ||||||| ||||| ||||||||||||||||| ||||||
seq2  GACCCGTATGT-GGATGGA-TCAAC-AGGTCTGTGACCATGCAGGCCAAA  95

seq1  TCCTCCAGTTCACTTAACATAA-GCCCAGTCTCT-TTCTCCAGCAAGATT  147
      |||||||| |||  |||||||| ||||||| ||| ||||||||| |||||
seq2  TCCTCCAG-TCAACTAACATAAGGCCCAGT-TCTCTTCTCCAGC-AGATT  142

seq1  CACCCTCCTAAGCC-AGAGGGAGACTACTGTTTGAATGGGAACAGGATCT  196
      ||||   ||||||| |||||||||||||||||||||| ||||||||||||
seq2  CACC--TCTAAGCCAAGAGGGAGACTACTGTTTGAAT-GGAACAGGATCT  189

seq1  AAGAAGGCAGAAGAACCCTGAAGCGTTGCCCATTGGTCCTGGCCTCAGGA  246
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AAGAAGGCAGAAGAA-CCTGAAGCGTTGCCCATTGGTCCTGG-CTCAGGA  237

seq1  GCCTTTCCTGGGCTAGGGGAAGACTGGGGAGTCTGGGCCACTCATCACAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCTGGGCTAGGGGAAGACTGGGGAGTCTGGGCCACTCATCACAA  287

seq1  GAGCCATGACTTTCTGGGTGAGGAAAGAAAACAGAGCTTCCATGACCCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGACTTTCTGGGTGAGGAAAGAAAACAGAGCTTCCATGACCCTC  337

seq1  AGACAAGGAACCCCCAACCTCAGGCCCATCAAGTCCCTACTGGAGAATGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGAACCCCCAACCTCAGGCCCATCAAGTCCCTACTGGAGAATGG  387

seq1  GTAGAGCCTGACTTGTCCATGCCTGGCTCCCCATTTCCTTGGCACCAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCCTGACTTGTCCATGCCTGGCTCCCCATTTCCTTGGCACCAATG  437

seq1  GCCCAGATCTCAGAGCCAATTGATCCTACACAATCTACCCAATGGGGGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATCTCAGAGCCAATTGATCCTACACAATCTACCCAATGGGGGAG  487

seq1  GAAAAGTCGTCTCCCCACTGATCCCAAAGACTAAGCCAAAGGAAGTCATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCGTCTCCCCACTGATCCCAAAGACTAAGCCAAAGGAAGTCATA  537

seq1  CCCAGAGAGGAGCAGGTAGCAATACCAGGAAGCTAGGGATGGCTGCAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGGAGCAGGTAGCAATACCAGGAAGCTAGGGATGGCTGCAGGA  587

seq1  CTCATCAGTGTCTCCTACCATCTCAATCCCCTGTTCAGGTAAAGCCACCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGTGTCTCCTACCATCTCAATCCCCTGTTCAGGTAAAGCCACCT  637

seq1  ACTGGTGGAAATGGCATATTTAGGCAGAACAGGAGTCTCTTTGACCATCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGAAATGGCATATTTAGGCAGAACAGGAGTCTCTTTGACCATCA  687

seq1  AGTGCTGCACTCATCCCAAGGCCTCATGGACCACGCACATCCCAGTCACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGCACTCATCCCAAGGCCTCATGGACCACGCACATCCCAGTCACC  737

seq1  TGCAACTGGTGGGTAACCAGCACAACTGTCTTCCCTTTGAGTGTCTTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGGTGGGTAACCAGCACAACTGTCTTCCCTTTGAGTGTCTTCTT  787

seq1  AATGCATTCTTCAAAGACATGCTTCCCCACGTGGGCATCCACAGCCGAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTCTTCAAAGACATGCTTCCCCACGTGGGCATCCACAGCCGAGA  837

seq1  GCGGGTCATCCAGCAGGTAGAGCTGACGATTAGCATACACAGCACGGGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTCATCCAGCAGGTAGAGCTGACGATTAGCATACACAGCACGGGCC  887

seq1  AGGCTGATCCTCTGCCTCTGTCCCCCAGAGAGGTTGACACCCCGCTCTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATCCTCTGCCTCTGTCCCCCAGAGAGGTTGACACCCCGCTCTCC  937

seq1  AATCTGTGGACAGGGATAATGGCACTGCCCATCATTATTAAGTCTGCCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGGACAGGGATAATGGCACTGCCCATCATTATTAAGTCTGCCTG  987

seq1  CCACCCCATGGTCTTTGTATATCAGGAGCATTCTAAAACTCTTCAGGACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCATGGTCTTTGTATATCAGGAGCATTCTAAAACTCTTCAGGACT  1037

seq1  CGGGGAGACAACACAGCTTGTTATCTCTCTCTGCACATAAGCTCCCCCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGACAACACAGCTTGTTATCTCTCTCTGCACATAAGCTCCCCCAT  1087

seq1  GCCTTACGCTAGGCAATGCTGACTGGAAGAATTC  1130
      ||||||||||||||||||||||||||||||||||
seq2  GCCTTACGCTAGGCAATGCTGACTGGAAGAATTC  1121

seq1: chr8_88984612_88985513
seq2: B6Ng01-024M21.g_68_969

seq1  GAATTCCACCTTGCTCTAGAATTCTTGCCTAGCTTGTCTTCTAAATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTTGCTCTAGAATTCTTGCCTAGCTTGTCTTCTAAATTCTT  50

seq1  GATGGAACATGAATGTGGTTGCATAAAAGTTCGTTTCTCTCTCTGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACATGAATGTGGTTGCATAAAAGTTCGTTTCTCTCTCTGGAGAA  100

seq1  GAAAAGAAGAAATACCTTTCTTACAGTTAACATTCTTTGCAAGGAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGAAATACCTTTCTTACAGTTAACATTCTTTGCAAGGAGAGAT  150

seq1  AGAGTGGAGAGAAAAGGAAAAGCCCATTAGATGTCAGTGTCTTGGAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGAGAAAAGGAAAAGCCCATTAGATGTCAGTGTCTTGGAGGGG  200

seq1  GGGAGCTTTTTGGTCACAGTGGATTCTCTCTCCCCCCTCCCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTTTTTGGTCACAGTGGATTCTCTCTCCCCCCTCCCTCTCTCTCT  250

seq1  GAAGTGTAATCATTTTTTAACCATCACCTCTGCTTTCTGTTCACTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTAATCATTTTTTAACCATCACCTCTGCTTTCTGTTCACTCAGAC  300

seq1  AGCACACAGGTTCCATGTACTTCATTTACATCGAGTCTTTTAAGCTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGGTTCCATGTACTTCATTTACATCGAGTCTTTTAAGCTTAGC  350

seq1  ACTATACCTATTAGTGAGATGCTGTTTCGGTTCCCATTGTATAGATGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACCTATTAGTGAGATGCTGTTTCGGTTCCCATTGTATAGATGAAG  400

seq1  AAACTGAGGTAAAGGTTTGTAGATATCCTCCAGATGCTACATTTAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGTAAAGGTTTGTAGATATCCTCCAGATGCTACATTTAGCAAA  450

seq1  TGGTCGGTCATGTGAATAGAAGCCCCAGTCTAAATGCCTGGTAGGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGGTCATGTGAATAGAAGCCCCAGTCTAAATGCCTGGTAGGGCTTC  500

seq1  TGAAGTTAAAAGAGGCTTCCCCTCAAATAGCTAGATATAAAGAAGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTAAAAGAGGCTTCCCCTCAAATAGCTAGATATAAAGAAGTTTCT  550

seq1  TTGATATCCCTGGGAGGAACCTGTTCTTAGCACTAACTGAACTTTCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATCCCTGGGAGGAACCTGTTCTTAGCACTAACTGAACTTTCCACA  600

seq1  GCACAGGAGCACCCTGCTAATCCATTGTCTCCATTCCCTCTGGCTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGAGCACCCTGCTAATCCATTGTCTCCATTCCCTCTGGCTGGCTT  650

seq1  CTTGCTGTTGCAGAGACAGAAGACAAATCCATGTGTCTGGGACCAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTTGCAGAGACAGAAGACAAATCCATGTGTCTGGGACCAAGCTG  700

seq1  AGGACATGATTTCTGTATGGGGCCACTTTGCCTGTTTGTGTTACTGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGATTTCTGTATGGGGCCACTTTGCCTGTTTGTGTTACTGCCTG  750

seq1  GCCTCTAAGGACACTTAAGTAGAGCTGTTTTAGCTTGTCACCAGCTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAAGGACACTTAAGTAGAGCTGTTTTAGCTTGTCACCAGCTACCA  800

seq1  CACTCACTCAGTCAGGATGGGATGGGGGATAGAGCATGGGTTCCTTCCAT  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACTCACTCAGTCAGGATGGGGTGGGGGATAGAGCATGGGTTCCTTCCAT  850

seq1  CCCATTTGGCGAGAGCTCCAGTTAGTGTCTTGGGAACCACAGGCACTGCA  900
      |||||||||||||| | ||||||||||||||||||||||| |||||||||
seq2  CCCATTTGGCGAGAACCCCAGTTAGTGTCTTGGGAACCACTGGCACTGCA  900

seq1  GT  902
      ||
seq2  GT  902