BAC Information

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BAC

Clone NameB6Ng01-030B11
Chromosome8 (Build37)
Map Location 4,652,929 - 4,829,106
singlet/doubletdoublet
Overlap geneEG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393
Upstream geneRetn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021
Downstream geneEG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030B11.bB6Ng01-030B11.g
ACCDH860098DH860099
length6231,004
definitionDH860098|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B11, 5' end.DH860099|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,828,484 - 4,829,106)(4,652,929 - 4,653,943)
sequence
gaattcactttatttgctgaaaatgttaagaggttgttcaatgccaccca
tttgtaatcaccacaataagagagaaaatagagcatgaatattaaatgtt
ttcagtattctagcaaaaaaaaaaaaaagatacaacacacgtatcattaa
attctaaaaccagattttcatgtcgtatttaaagttggtagcatctggga
agtcacttctataattatcagtgtgtcattttaaagtgtgtaagaacatt
acttacatgttggtttgtcatttctgggtaataatttttctaccaacacc
tgtattaaaatcttgatggccagaagtccattcaattggaaatctggaaa
gctgctgcaaaaattgcatcaaggtttttaaaaatatagtcttacttgtc
taaaagccaaatacaaaggagcaaaatttcacaggtgagttgtttagatt
gaagccaacaaatcaatttctacccacttttaaaagaaggattgtgtggt
agaaaaggcctcatcaagttgcatcttttgaaactgaattgatgtgaaat
taaacctagaaaaaacagagaagatgcagagaaagaaagaaggaaaggaa
gggagggagagagggagggaggg
gaattcagaggaaaggatttccttttcaaattatattttgctgagttttg
tcttatattcagggcacactggatctaagatacaggaggcagagtggttt
gagtcacttctaaaggttcctggtattatgtaccgtcaagatgggaatgc
ccatttcttcaaatctgttactctagaagcccctgaagaagccggacagt
gtcacacagtgaatatgggaaacagccttcttcactgacttgtgcagcaa
agtgacacatccttatgaaaagcaagggggttggctgtcactcacattcc
agtcgctgagaataaaaagcaactaggaattgttgagaagtgtgaaccca
gtattaatcagctctgaatctacagagccttatagcaacaagaaagccag
aaactgagcaacttgggccacagatggctaggaccactgtaaacaagaga
ggcacacactttcttgccaaatgccatttttgcctgggtgttttttattt
ttattttttattttctttgcagtgcagtgttgctggtccaacatagcacc
ttatcttttggataagtactatgttgtatttataccaattaattacttga
aacagtgatacacctgtctttttgctgtgtcaagcctgcaatatattttc
caggtggtttggtttttaaataaagtttcattgtctcaaaaaaaaaagaa
aaaaaaagaaaaaaaaagagaaaggacaggagaaaagtacagagggtcag
gaaattgagtacaaatatttagtagtgggggatggagaactggggttgcc
actagaaagtcccagatgcaagggaagtgagaggctcccaggacccaaag
gggatgactttaatacccaacaaaggggaaatagaacctgtagagacacc
tccagtagatggacatggcccagttgagcgatggggcacccaactatctc
aaaatttaatcttaattgctctgtccaaggaagacgggacaaaaaaaaaa
aaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_4828484_4829106
seq2: B6Ng01-030B11.b_44_666 (reverse)

seq1  CCCTCCCTCCCTCTCTCCCTCCCTTCCTTTCCTTCTTTCTTTCTCTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCCTCTCTCCCTCCCTTCCTTTCCTTCTTTCTTTCTCTGCAT  50

seq1  CTTCTCTGTTTTTTCTAGGTTTAATTTCACATCAATTCAGTTTCAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTTTTTTCTAGGTTTAATTTCACATCAATTCAGTTTCAAAAGA  100

seq1  TGCAACTTGATGAGGCCTTTTCTACCACACAATCCTTCTTTTAAAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTGATGAGGCCTTTTCTACCACACAATCCTTCTTTTAAAAGTGG  150

seq1  GTAGAAATTGATTTGTTGGCTTCAATCTAAACAACTCACCTGTGAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATTGATTTGTTGGCTTCAATCTAAACAACTCACCTGTGAAATTT  200

seq1  TGCTCCTTTGTATTTGGCTTTTAGACAAGTAAGACTATATTTTTAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTGTATTTGGCTTTTAGACAAGTAAGACTATATTTTTAAAAAC  250

seq1  CTTGATGCAATTTTTGCAGCAGCTTTCCAGATTTCCAATTGAATGGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGCAATTTTTGCAGCAGCTTTCCAGATTTCCAATTGAATGGACTT  300

seq1  CTGGCCATCAAGATTTTAATACAGGTGTTGGTAGAAAAATTATTACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATCAAGATTTTAATACAGGTGTTGGTAGAAAAATTATTACCCAG  350

seq1  AAATGACAAACCAACATGTAAGTAATGTTCTTACACACTTTAAAATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAACCAACATGTAAGTAATGTTCTTACACACTTTAAAATGACA  400

seq1  CACTGATAATTATAGAAGTGACTTCCCAGATGCTACCAACTTTAAATACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAATTATAGAAGTGACTTCCCAGATGCTACCAACTTTAAATACG  450

seq1  ACATGAAAATCTGGTTTTAGAATTTAATGATACGTGTGTTGTATCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAATCTGGTTTTAGAATTTAATGATACGTGTGTTGTATCTTTTT  500

seq1  TTTTTTTTTGCTAGAATACTGAAAACATTTAATATTCATGCTCTATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGCTAGAATACTGAAAACATTTAATATTCATGCTCTATTTTC  550

seq1  TCTCTTATTGTGGTGATTACAAATGGGTGGCATTGAACAACCTCTTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATTGTGGTGATTACAAATGGGTGGCATTGAACAACCTCTTAACA  600

seq1  TTTTCAGCAAATAAAGTGAATTC  623
      |||||||||||||||||||||||
seq2  TTTTCAGCAAATAAAGTGAATTC  623

seq1: chr8_4652929_4653943
seq2: B6Ng01-030B11.g_68_1071

seq1  GAATTCAGAGGAAAGGATTTCCTTTTCAAATTATATTTTGCTGAGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGAAAGGATTTCCTTTTCAAATTATATTTTGCTGAGTTTTG  50

seq1  TCTTATATTCAGGGCACACTGGATCTAAGATACAGGAGGCAGAGTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATTCAGGGCACACTGGATCTAAGATACAGGAGGCAGAGTGGTTT  100

seq1  GAGTCACTTCTAAAGGTTCCTGGTATTATGTACCGTCAAGATGGGAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTTCTAAAGGTTCCTGGTATTATGTACCGTCAAGATGGGAATGC  150

seq1  CCATTTCTTCAAATCTGTTACTCTAGAAGCCCCTGAAGAAGCCGGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTCAAATCTGTTACTCTAGAAGCCCCTGAAGAAGCCGGACAGT  200

seq1  GTCACACAGTGAATATGGGAAACAGCCTTCTTCACTGACTTGTGCAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACAGTGAATATGGGAAACAGCCTTCTTCACTGACTTGTGCAGCAA  250

seq1  AGTGACACATCCTTATGAAAAGCAAGGGGGTTGGCTGTCACTCACATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACATCCTTATGAAAAGCAAGGGGGTTGGCTGTCACTCACATTCC  300

seq1  AGTCGCTGAGAATAAAAAGCAACTAGGAATTGTTGAGAAGTGTGAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCTGAGAATAAAAAGCAACTAGGAATTGTTGAGAAGTGTGAACCCA  350

seq1  GTATTAATCAGCTCTGAATCTACAGAGCCTTATAGCAACAAGAAAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATCAGCTCTGAATCTACAGAGCCTTATAGCAACAAGAAAGCCAG  400

seq1  AAACTGAGCAACTTGGGCCACAGATGGCTAGGACCACTGTAAACAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCAACTTGGGCCACAGATGGCTAGGACCACTGTAAACAAGAGA  450

seq1  GGCACACACTTTCTTGCCAAATGCCATTTTTGCCTGGGTGTTTTTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACTTTCTTGCCAAATGCCATTTTTGCCTGGGTGTTTTTTATTT  500

seq1  TTATTTTTTATTTTCTTTGCAGTGCAGTGTTGCTGGTCCAACATAGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATTTTCTTTGCAGTGCAGTGTTGCTGGTCCAACATAGCACC  550

seq1  TTATCTTTTGGATAAGTACTATGTTGTATTTATACCAATTAATTACTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTGGATAAGTACTATGTTGTATTTATACCAATTAATTACTTGA  600

seq1  AACAGTGATACACCTGTCTTTTTGCTGTGTCAAGCCTGCAATATATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGATACACCTGTCTTTTTGCTGTGTCAAGCCTGCAATATATTTTC  650

seq1  CAGGTGGTTTGGTTTTTAAATAAAGTTTCATTGTCTCAAAAAAAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTTTGGTTTTTAAATAAAGTTTCATTGTCTCAAAAAAAAAAGAA  700

seq1  AAAAAAAGAAAAAAAAAGAGAAAGGACAGGAGAAAAGTACAGAGGGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAAAAAAAGAGAAAGGACAGGAGAAAAGTACAGAGGGTCAG  750

seq1  GAAATTGAGTACAAATATTTAGTAGTGGGGGATGGAGAACTGGGGTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAGTACAAATATTTAGTAGTGGGGGATGGAGAACTGGGGTTGCC  800

seq1  ACTAGAAAGTCCCAGATGCAAGGGAAGTGAGAGGCTCCCAGGACCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAGTCCCAGATGCAAGGGAAGTGAGAGGCTCCCAGGACCCAAAG  850

seq1  GGGATGACTTTAATACCCAACAAAGGGGAAATAGAACCTGTAGAGACCAC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGATGACTTTAATACCCAACAAAGGGGAAATAGAACCTGTAGAGA-CAC  899

seq1  CTCCAGTAGATGGACATGGCCCCCAGTTGAGCGATGGGGCCACCCACCTA  950
      |||||||||||||||||||  |||||||||||||||||| |||||| |||
seq2  CTCCAGTAGATGGACATGG--CCCAGTTGAGCGATGGGG-CACCCAACTA  946

seq1  TCTCAAAATTTTTAATCCTTAATTGCTCCTGTCCAAAGGAAAGACAGGGA  1000
      ||||||||  |||||| |||||||||| ||||||||  | ||||| ||||
seq2  TCTCAAAA--TTTAAT-CTTAATTGCT-CTGTCCAA--GGAAGAC-GGGA  989

seq1  CAAAAAAAAAAAAAA  1015
      |||||||||||||||
seq2  CAAAAAAAAAAAAAA  1004