BAC Information

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BAC

Clone NameB6Ng01-032N24
Chromosome8 (Build37)
Map Location 112,393,580 - 112,524,793
singlet/doubletdoublet
Overlap genePhlppl, Marveld3, LOC100041884, Tat
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1
Downstream geneChst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032N24.bB6Ng01-032N24.g
ACCDH862086DH862087
length1,0841,097
definitionDH862086|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N24, 5' end.DH862087|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,393,580 - 112,394,675)(112,523,666 - 112,524,793)
sequence
gaattcctctagagttctagaagagcaattggcaggatttaaaacttgcc
aaagaaggggaagaaaattaagatttaatgtgtttcgaaaccagtctgcc
aaacatcgaagatacttaatgttaaaagcaaaccttaagtaattaaatga
gattgttgttgagtaatatttccttttattaagattattagtaaagtagc
acaaagatggaagcagcagaaaaatttatttgttgtacttagtgaattca
taaaaccaatactcagtagactgaaattttattttctggcacctcccagt
gttaatgcatagtttactttagactaacttcataactgttacctacactg
ttacctacactggaatttactcaagcataaatcgaagtgtaattactcaa
agtcttccagatatttaaaatgatagcaaataacgaactgtaaattgtga
gtggattcagtacaggcaagagatctgcaggactaacttatgaggaaata
gttttgagagatatcaaatggcttttggtatgcagaggatggtcaattta
aaaaaaaaaaaacttttcttgtaacctttttgggtcatgttgaaatggcc
aattgcatgaatggagggttcctgaagctctcattttgggatcattagaa
agattccagtgatgggtcggtcagtcttgattcttggtcagaattgagct
cttgccatgaaagtctttctgaaaggccttcctggccttgctttcctgaa
ttagttaacactaatcctcgtaaataagtgggatagatggtcatggaaac
aggccttgtgtgtcccgcaagcagaagttctctggagttgctgagtggtt
cgctctctcaattttagcctataaagagtacaagaggtgagcagcagact
ttctgaaccttgaagaatgtcatgtttgcccacaggtttttctctggaga
tgtttgtaaagacttctctagcctagagcatggctctgggtaggagtgca
aggaggtcagcagccctcaacatacaagctctggtttatctcagctcagc
atcaaaatacttataaaagtgatgcatgcttaat
gaattctgttagtaatgccaggtggaattatctgtgcaggggaagctaag
agccttttgtaaagtaccaccttcctgtttattttggggggcaggagaca
ggaaaaggggagccagacgtttttggaaaagatccgctctggtggcacac
aggaaatgattgtttttatcatcttaatcattatatcttcctttattatg
gatatgacagggaaatttaaggcataaaatgtctggcagctcactgaact
gaagcacaggttagaagggacttttggcacttttttttttttttaagtag
gataattctttggttgtgaccagcaggattgagaccccaaatgcctcttc
taattgagaaaacccgcctcggtgagccatctccagacggtgatgatcta
gtacagcccccagccaaccttgtaagatttctcctgcccttgtctaaaga
gaagcgttgagggaaagtcgtaaagaggcaactgcaccacagaaggtttg
cagacaaagtgctgacctcttatccctaggtcaaatgaaagtagttccac
cgagtagctacaggagttaggtaagggtaggtgactggtactgaagatac
acgtagacatccgatacataggtagggtgtgtgggacaatgctaacagac
aggcagaagaactggtaaggttgagtaagctcaaaccctggggaatctcg
gagatttgagaagagcaagagtggagccattccccgtccgtctctgtacc
tgctctggacatgtaaccacgacagcccaacagagaggaccacgggcagt
cagtcacatagcataaagtgactcctcttcgccatgttaatgaggtatct
agatagccttgagccttagccagtgaccttcctttcctgggattctcacg
ccctcactaggagtactaatctctggtcactcaaataaagtgtatggatc
cacacccaccctccatcagcagatgaccaagcacagatcatcacagagag
ctgctcatgaagattgccacagaagcctcacttaaagagcatgcccaaga
tcctgagatgccagagatcaactgataacttattaaaaaagagatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112393580_112394675
seq2: B6Ng01-032N24.b_46_1129

seq1  GAATTCCTCTAGAGTTCTAGAAGAGCAATTGGCAGGATTTAAAACTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAGAGTTCTAGAAGAGCAATTGGCAGGATTTAAAACTTGCC  50

seq1  AAAGAAGGGGAAGAAAATTAAGATTTAATGTGTTTCGAAACCAGTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGGAAGAAAATTAAGATTTAATGTGTTTCGAAACCAGTCTGCC  100

seq1  AAACATCGAAGATACTTAATGTTAAAAGCAAACCTTAAGTAATTAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCGAAGATACTTAATGTTAAAAGCAAACCTTAAGTAATTAAATGA  150

seq1  GATTGTTGTTGAGTAATATTTCCTTTTATTAAGATTATTAGTAAAGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGTTGAGTAATATTTCCTTTTATTAAGATTATTAGTAAAGTAGC  200

seq1  ACAAAGATGGAAGCAGCAGAAAAATTTATTTGTTGTACTTAGTGAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGGAAGCAGCAGAAAAATTTATTTGTTGTACTTAGTGAATTCA  250

seq1  TAAAACCAATACTCAGTAGACTGAAATTTTATTTTCTGGCACCTCCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAATACTCAGTAGACTGAAATTTTATTTTCTGGCACCTCCCAGT  300

seq1  GTTAATGCATAGTTTACTTTAGACTAACTTCATAACTGTTACCTACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCATAGTTTACTTTAGACTAACTTCATAACTGTTACCTACACTG  350

seq1  TTACCTACACTGGAATTTACTCAAGCATAAATCGAAGTGTAATTACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACACTGGAATTTACTCAAGCATAAATCGAAGTGTAATTACTCAA  400

seq1  AGTCTTCCAGATATTTAAAATGATAGCAAATAACGAACTGTAAATTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCAGATATTTAAAATGATAGCAAATAACGAACTGTAAATTGTGA  450

seq1  GTGGATTCAGTACAGGCAAGAGATCTGCAGGACTAACTTATGAGGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCAGTACAGGCAAGAGATCTGCAGGACTAACTTATGAGGAAATA  500

seq1  GTTTTGAGAGATATCAAATGGCTTTTGGTATGCAGAGGATGGTCAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGAGATATCAAATGGCTTTTGGTATGCAGAGGATGGTCAATTTA  550

seq1  AAAAAAAAAAAACTTTTCTTGTAACCTTTTTGGGTCATGTTGAAATGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACTTTTCTTGTAACCTTTTTGGGTCATGTTGAAATGGCC  600

seq1  AATTGCATGAATGGAGGGTTCCTGAAGCTCTCATTTTGGGATCATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATGAATGGAGGGTTCCTGAAGCTCTCATTTTGGGATCATTAGAA  650

seq1  AGATTCCAGTGATGGGTCGGTCAGTCTTGATTCTTGGTCAGAATTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGTGATGGGTCGGTCAGTCTTGATTCTTGGTCAGAATTGAGCT  700

seq1  CTTGCCATGAAAGTCTTTCTGAAAGGCCTTCCTGGCCTTGCTTTCCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATGAAAGTCTTTCTGAAAGGCCTTCCTGGCCTTGCTTTCCTGAA  750

seq1  TTAGTTAACACTAATCCTCGTAAATAAGTGGGATAGATGGTCATGGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAACACTAATCCTCGTAAATAAGTGGGATAGATGGTCATGGAAAC  800

seq1  AGGCCTTGTGTGTCCCGCAAGCAGAAGTTCTCTGGAGTTGCTGAGTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGTGTGTCCCGCAAGCAGAAGTTCTCTGGAGTTGCTGAGTGGTT  850

seq1  CGCTCTCTCAATTTTAGCCTATAAAGAGTACAAGAGGTGAGCAGCAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCTCAATTTTAGCCTATAAAGAGTACAAGAGGTGAGCAGCAGACT  900

seq1  TTCTGAACCTTGAAGAATGTCATGTTTGCCCACAGGTTTTTCTCTGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACCTTGAAGAATGTCATGTTTGCCCACAGGTTTTTCTCTGGAGA  950

seq1  TGTTTGTAAAGACTTCTCTAGCCTAGGAGCATGGCTCTGGGTTAGGAGTG  1000
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TGTTTGTAAAGACTTCTCTAGCCTA-GAGCATGGCTCTGGG-TAGGAGTG  998

seq1  CAGGGAGGGTCAGCAGCCCTCCAACATACAAGGCTCTGGTTTTATTCCTC  1050
      || ||| ||||||||||||| |||||||||| ||||||| |||||  |||
seq2  CAAGGA-GGTCAGCAGCCCT-CAACATACAA-GCTCTGG-TTTAT--CTC  1042

seq1  AGCTCAAGCATCAAAATACTTATAAAAAGTTGATGCATGCCTTAAT  1096
      ||||| |||||||||||||||||||||   ||||||||| ||||||
seq2  AGCTC-AGCATCAAAATACTTATAAAA--GTGATGCATG-CTTAAT  1084

seq1: chr8_112523666_112524793
seq2: B6Ng01-032N24.g_67_1163 (reverse)

seq1  TATTCTCTTTTTTTTTAAATAAAATTTTATCAAGTATGCTTCTCTGTGCC  50
      || ||||||||||    |||||    ||||||     | |  ||| || |
seq2  TAATCTCTTTTTT----AATAA---GTTATCA-----GTTGATCTCTGGC  38

seq1  TTCTTCAGGGATCTTGGGCATGGCTCTTTTAGGTGAAGGCCTTCCCTGTG  100
       || ||| ||||||||||||| |||| |||| ||||  | |||  |||||
seq2  ATC-TCA-GGATCTTGGGCAT-GCTC-TTTAAGTGA--GGCTT--CTGTG  80

seq1  GCAATCTTTAATGAAGCAGCTCTCTGTGATGATCTGTGCTTGGTCATACT  150
      |||||| || ||| ||||||||||||||||||||||||||||||||| ||
seq2  GCAATC-TTCATG-AGCAGCTCTCTGTGATGATCTGTGCTTGGTCAT-CT  127

seq1  GCTTGATTGGGGGGTGGGTGTGGATCCATACACTTTATTTGGGTGACCCA  200
      || ||| ||| |||||||||||||||||||||||||||||| |||| |||
seq2  GC-TGA-TGGAGGGTGGGTGTGGATCCATACACTTTATTTGAGTGA-CCA  174

seq1  GAGATTAAGTACCTCTTGGGTGAAGGGCGTGAGAATCCCCAGGAAAGGAA  250
      |||||| |||||  || | |   ||||||||||||| |||||||||||||
seq2  GAGATT-AGTACTCCTAGTG---AGGGCGTGAGAAT-CCCAGGAAAGGAA  219

seq1  GGTCACTGGCTAAAGGCTCAAGGCTATCTAGATACCTCATTAACATGGCG  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGGCT-AAGGCTCAAGGCTATCTAGATACCTCATTAACATGGCG  268

seq1  AAGAGGAGTCACTTTATGCTATGTGACTGACTGCCCGTGGTCCTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTCACTTTATGCTATGTGACTGACTGCCCGTGGTCCTCTCTGT  318

seq1  T-GGCTGTCGTGGTTACATGTCCAGAGCAGGTACAGAGACGGACGGGGAA  399
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTCGTGGTTACATGTCCAGAGCAGGTACAGAGACGGACGGGGAA  368

seq1  TGGCTCCACTCTTGCTCTTCTCAAATCTCCGAGATTCCCCAGGGTTTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCACTCTTGCTCTTCTCAAATCTCCGAGATTCCCCAGGGTTTGAG  418

seq1  CTTACTCAACCTTACCAGTTCTTCTGCCTGTCTGTTAGCATTGTCCCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAACCTTACCAGTTCTTCTGCCTGTCTGTTAGCATTGTCCCACA  468

seq1  CACCCTACCTATGTATCGGATGTCTACGTGTATCTTCAGTACCAGTCACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACCTATGTATCGGATGTCTACGTGTATCTTCAGTACCAGTCACC  518

seq1  TACCCTTACCTAACTCCTGTAGCTACTCGGTGGAACTACTTTCATTTGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTACCTAACTCCTGTAGCTACTCGGTGGAACTACTTTCATTTGAC  568

seq1  CTAGGGATAAGAGGTCAGCACTTTGTCTGCAAACCTTCTGTGGTGCAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGATAAGAGGTCAGCACTTTGTCTGCAAACCTTCTGTGGTGCAGTT  618

seq1  GCCTCTTTACGACTTTCCCTCAACGCTTCTCTTTAGACAAGGGCAGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTACGACTTTCCCTCAACGCTTCTCTTTAGACAAGGGCAGGAGA  668

seq1  AATCTTACAAGGTTGGCTGGGGGCTGTACTAGATCATCACCGTCTGGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACAAGGTTGGCTGGGGGCTGTACTAGATCATCACCGTCTGGAGA  718

seq1  TGGCTCACCGAGGCGGGTTTTCTCAATTAGAAGAGGCATTTGGGGTCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACCGAGGCGGGTTTTCTCAATTAGAAGAGGCATTTGGGGTCTCA  768

seq1  ATCCTGCTGGTCACAACCAAAGAATTATCCTACTTAAAAAAAAAAAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTGGTCACAACCAAAGAATTATCCTACTTAAAAAAAAAAAAAAG  818

seq1  TGCCAAAAGTCCCTTCTAACCTGTGCTTCAGTTCAGTGAGCTGCCAGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAAGTCCCTTCTAACCTGTGCTTCAGTTCAGTGAGCTGCCAGACA  868

seq1  TTTTATGCCTTAAATTTCCCTGTCATATCCATAATAAAGGAAGATATAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCCTTAAATTTCCCTGTCATATCCATAATAAAGGAAGATATAAT  918

seq1  GATTAAGATGATAAAAACAATCATTTCCTGTGTGCCACCAGAGCGGATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGATGATAAAAACAATCATTTCCTGTGTGCCACCAGAGCGGATCT  968

seq1  TTTCCAAAAACGTCTGGCTCCCCTTTTCCTGTCTCCTGCCCCCCAAAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAAACGTCTGGCTCCCCTTTTCCTGTCTCCTGCCCCCCAAAATA  1018

seq1  AACAGGAAGGTGGTACTTTACAAAAGGCTCTTAGCTTCCCCTGCACAGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAGGTGGTACTTTACAAAAGGCTCTTAGCTTCCCCTGCACAGAT  1068

seq1  AATTCCACCTGGCATTACTAACAGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  AATTCCACCTGGCATTACTAACAGAATTC  1097