BAC Information

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BAC

Clone NameB6Ng01-033O23
Chromosome8 (Build37)
Map Location 93,950,276 - 94,097,427
singlet/doubletdoublet
Overlap geneAJ237917
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033O23.bB6Ng01-033O23.g
ACCDH862844DH862845
length8001,076
definitionDH862844|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O23, 5' end.DH862845|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,950,276 - 93,951,075)(94,096,339 - 94,097,427)
sequence
gaattctcaaatattcctacaagacgtttgttaaagagaactataatttt
gtgctccttgcagtgtctccactcaaggttggaggcagggaagtggtcat
tctgttctttctttccagcatgtttagggatgccttaacatactctattt
tcatgtgattggctgttgtcctggtttggaagctgaaggttttccttgtt
ctctcttctgcccttctacctgcacacacacacacctcagttccccaccc
ctgtttgagatgtgctgtcattttggttaaactggtacccagcctccaca
gtaattatgcctctgaaaatgcgggtcagcacattgcataatctgtgctc
aagttaccttttaaacagttcagcttttcctgtgttaatgtgaatcttgc
cttttctgtttgcagtttttctctgtacttaagatcagttaaatttcaca
cccactctctaccacctgtctgaatctctcttcaacaaggtcaaaatcag
ctcttcagtcaggtttatatttttggagtaatggtcttccagaaacatct
gacctgctctggttgggacgggccaccttctgcacctgatggcactgacc
cctgtaacctcacccacaccctcttgttttctggccttggtggaacatgt
tctccaaatacactagagaaaaattagagtgtaattacatttttaaatat
tacattcatttcttcactgtgtgtgtctgtgtgtctctgtgtgggatgtg
tgtctgtgtgtgcacacatgtggagtgctgtgtgtgtgtgtgtgtgtgtg

gaattcagtcagtaccttgactgcttagtcctatgtcaagctagactaga
tagcaagacccggttctccagaaataaaaaaataaaacaacccctgcaac
tttgcctgcccatctcctactccatgttctttaaaatagaagccaccttt
ccattctgcaccctcagaatcctgcacagtcctccgagcgtctgaaagtt
taatgttttttgaataatcagtgtcctggtgtcatttttggtgtttcctt
ctcataggctggcgtattctactcacttaatctactcagccttcctcagg
ggattgtctgtctgcagtcttattatttcttcctcctagaagctagtgca
ccagtggagtatggtgtctttcaaggaacagaaaaccaactatgcaaagt
ttaaaccatcagggcagttattcattgaagaagtctgaaggtgggagctt
cgggttggtcaccccagtcccaggctctttccatccctctgttttaccga
catgactattatagccctctgtctccaatcaattcatcccaggaagttgg
ctgctaaagccccagcatcaagcccttccactgtgctcaaagggaggtac
ctctggaagggcagagaacagagaataccaggaattctccacagtgagca
aaatacttcccagcagtccctagcaggcagatctgaacgtaccacgtggc
cacaccctcacccgctcgctgggtggaggctgggaaagtggacaccagga
gggaagcaggaatgtcacaattggcttaatccaagcatgcctttctcctc
tcactggccccctgccactgaaatcaagagatctctacccacaaactgaa
gaaaggtgaagaaggcagggaggggagaggggacctggcctcagtctgtg
accaagcgcacctgccaggacagcactgctaggtgccaggcttcttggca
tcaagaggacgagcaggttccagactgcctctcctccgggggttctggcc
ggtggtggtccacggtggatcccaaagctggtagatgagcttaaagctac
tgaaaaatctcttcactgcctctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_93950276_93951075
seq2: B6Ng01-033O23.b_44_843

seq1  GAATTCTCAAATATTCCTACAAGACGTTTGTTAAAGAGAACTATAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATATTCCTACAAGACGTTTGTTAAAGAGAACTATAATTTT  50

seq1  GTGCTCCTTGCAGTGTCTCCACTCAAGGTTGGAGGCAGGGAAGTGGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTTGCAGTGTCTCCACTCAAGGTTGGAGGCAGGGAAGTGGTCAT  100

seq1  TCTGTTCTTTCTTTCCAGCATGTTTAGGGATGCCTTAACATACTCTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTTCTTTCCAGCATGTTTAGGGATGCCTTAACATACTCTATTT  150

seq1  TCATGTGATTGGCTGTTGTCCTGGTTTGGAAGCTGAAGGTTTTCCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGATTGGCTGTTGTCCTGGTTTGGAAGCTGAAGGTTTTCCTTGTT  200

seq1  CTCTCTTCTGCCCTTCTACCTGCACACACACACACCTCAGTTCCCCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTGCCCTTCTACCTGCACACACACACACCTCAGTTCCCCACCC  250

seq1  CTGTTTGAGATGTGCTGTCATTTTGGTTAAACTGGTACCCAGCCTCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAGATGTGCTGTCATTTTGGTTAAACTGGTACCCAGCCTCCACA  300

seq1  GTAATTATGCCTCTGAAAATGCGGGTCAGCACATTGCATAATCTGTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATGCCTCTGAAAATGCGGGTCAGCACATTGCATAATCTGTGCTC  350

seq1  AAGTTACCTTTTAAACAGTTCAGCTTTTCCTGTGTTAATGTGAATCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCTTTTAAACAGTTCAGCTTTTCCTGTGTTAATGTGAATCTTGC  400

seq1  CTTTTCTGTTTGCAGTTTTTCTCTGTACTTAAGATCAGTTAAATTTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTTTGCAGTTTTTCTCTGTACTTAAGATCAGTTAAATTTCACA  450

seq1  CCCACTCTCTACCACCTGTCTGAATCTCTCTTCAACAAGGTCAAAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCTACCACCTGTCTGAATCTCTCTTCAACAAGGTCAAAATCAG  500

seq1  CTCTTCAGTCAGGTTTATATTTTTGGAGTAATGGTCTTCCAGAAACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTCAGGTTTATATTTTTGGAGTAATGGTCTTCCAGAAACATCT  550

seq1  GACCTGCTCTGGTTGGGACGGGCCACCTTCTGCACCTGATGGCACTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTCTGGTTGGGACGGGCCACCTTCTGCACCTGATGGCACTGACC  600

seq1  CCTGTAACCTCACCCACACCCTCTTGTTTTCTGGCCTTGGTGGAACATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACCTCACCCACACCCTCTTGTTTTCTGGCCTTGGTGGAACATGT  650

seq1  TCTCCAAATACACTAGAGAAAAATTAGAGTGTAATTACATTTTTAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAATACACTAGAGAAAAATTAGAGTGTAATTACATTTTTAAATAT  700

seq1  TACATTCATTTCTTCACTGTGTGTGTCTGTGTGTCTCTGTGTGGGATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATTTCTTCACTGTGTGTGTCTGTGTGTCTCTGTGTGGGATGTG  750

seq1  TGTCTGTGTGTGCACACATGTGGAGTGCTGTGTGTGTGTGTGTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTGCACACATGTGGAGTGCTGTGTGTGTGTGTGTGTGTGTG  800

seq1: chr8_94096339_94097427
seq2: B6Ng01-033O23.g_70_1145 (reverse)

seq1  GACAGAGGCAGGTAGCAGGAGTTCCTCGATGCCTTAAAGCTCATCTGACA  50
      |||||||||||   | ||   ||  ||  |  ||| ||||||||||  ||
seq2  GACAGAGGCAG--TGAAGAGATTTTTCAGTAGCTTTAAGCTCATCTACCA  48

seq1  GCTCTTGTGATACCACCGTGGACCACCAACTGCGCAGAACCCCGCGAGGA  100
      ||| ||| ||| |||||||||||||||| | || |||||||||  |||||
seq2  GCT-TTGGGAT-CCACCGTGGACCACCACCGGC-CAGAACCCCCGGAGGA  95

seq1  GAAGGCAGGTCTGGAAACCTGCTCGTCCTCTTTGATGGCCAGGAAGCCTG  150
      | ||||| |||||| ||||||||||||||| ||||| |||| ||||||||
seq2  G-AGGCA-GTCTGG-AACCTGCTCGTCCTC-TTGAT-GCCAAGAAGCCTG  140

seq1  GCAACCTTAGCAGTGCTGTCCTGGCAGGTGCGCTTGGTCACAGACCTGAG  200
      |||  | ||||||||||||||||||||||||||||||||||||| |||||
seq2  GCA--CCTAGCAGTGCTGTCCTGGCAGGTGCGCTTGGTCACAGA-CTGAG  187

seq1  GCCAGGTCCCCTCTCCCCTCCCTGCCTTCTTCACCTTTCTTCAGTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCCCCTCTCCCCTCCCTGCCTTCTTCACCTTTCTTCAGTTTGTG  237

seq1  GGTAGAGATCTCTTGATTTCAGTGGCAGGGGGCCAGTGAGAGGAGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGATCTCTTGATTTCAGTGGCAGGGGGCCAGTGAGAGGAGAAAGG  287

seq1  CATGCTTGGATTAAGCCAATTGTGACATTCCTGCTTCCCTCCTGGTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGGATTAAGCCAATTGTGACATTCCTGCTTCCCTCCTGGTGTCC  337

seq1  ACTTTCCCAGCCTCCACCCAGCGAGCGGGTGAGGGTGTGGCCACGTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCAGCCTCCACCCAGCGAGCGGGTGAGGGTGTGGCCACGTGGTA  387

seq1  CGTTCAGATCTGCCTGCTAGGGACTGCTGGGAAGTATTTTGCTCACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGATCTGCCTGCTAGGGACTGCTGGGAAGTATTTTGCTCACTGTG  437

seq1  GAGAATTCCTGGTATTCTCTGTTCTCTGCCCTTCCAGAGGTACCTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCCTGGTATTCTCTGTTCTCTGCCCTTCCAGAGGTACCTCCCTT  487

seq1  TGAGCACAGTGGAAGGGCTTGATGCTGGGGCTTTAGCAGCCAACTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGTGGAAGGGCTTGATGCTGGGGCTTTAGCAGCCAACTTCCTG  537

seq1  GGATGAATTGATTGGAGACAGAGGGCTATAATAGTCATGTCGGTAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATTGATTGGAGACAGAGGGCTATAATAGTCATGTCGGTAAAACA  587

seq1  GAGGGATGGAAAGAGCCTGGGACTGGGGTGACCAACCCGAAGCTCCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGGAAAGAGCCTGGGACTGGGGTGACCAACCCGAAGCTCCCACC  637

seq1  TTCAGACTTCTTCAATGAATAACTGCCCTGATGGTTTAAACTTTGCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTTCTTCAATGAATAACTGCCCTGATGGTTTAAACTTTGCATAG  687

seq1  TTGGTTTTCTGTTCCTTGAAAGACACCATACTCCACTGGTGCACTAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTCTGTTCCTTGAAAGACACCATACTCCACTGGTGCACTAGCTT  737

seq1  CTAGGAGGAAGAAATAATAAGACTGCAGACAGACAATCCCCTGAGGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGAAGAAATAATAAGACTGCAGACAGACAATCCCCTGAGGAAGG  787

seq1  CTGAGTAGATTAAGTGAGTAGAATACGCCAGCCTATGAGAAGGAAACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGATTAAGTGAGTAGAATACGCCAGCCTATGAGAAGGAAACACC  837

seq1  AAAAATGACACCAGGACACTGATTATTCAAAAAACATTAAACTTTCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACACCAGGACACTGATTATTCAAAAAACATTAAACTTTCAGAC  887

seq1  GCTCGGAGGACTGTGCAGGATTCTGAGGGTGCAGAATGGAAAGGTGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGAGGACTGTGCAGGATTCTGAGGGTGCAGAATGGAAAGGTGGCTT  937

seq1  CTATTTTAAAGAACATGGAGTAGGAGATGGGCAGGCAAAGTTGCAGGGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAAAGAACATGGAGTAGGAGATGGGCAGGCAAAGTTGCAGGGGT  987

seq1  TGTTTTATTTTTTTATTTCTGGAGAACCGGGTCTTGCTATCTAGTCTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTTTTTATTTCTGGAGAACCGGGTCTTGCTATCTAGTCTAGC  1037

seq1  TTGACATAGGACTAAGCAGTCAAGGTACTGACTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGACATAGGACTAAGCAGTCAAGGTACTGACTGAATTC  1076