BAC Information

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BAC

Clone NameB6Ng01-034C05
Chromosome8 (Build37)
Map Location 88,923,322 - 89,091,716
singlet/doubletdoublet
Overlap geneAbcc12
Upstream gene4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneLonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034C05.bB6Ng01-034C05.g
ACCDH862984DH862985
length1,077948
definitionDH862984|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C05, 5' end.DH862985|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,923,322 - 88,924,412)(89,091,145 - 89,091,716)
sequence
gaattcccatactgtcaagagaatacactagaaaaactttgaagattagt
ttaattcatctgttagcttgatttccgtttctagtgtgctgactctccct
ggaagagactggtatgggctcaggactcccaagatcgagttctcagcata
aagtgcatggggcctctttcctaggggtgtgttccactccctgcaggatt
agggctggaacagtgcacaggatactggggcattccagggaagtctggct
ctaagcacaaagactctccaggttgactgaccagttttaactctggtgtt
ccagaagtcattcgttccatcagttgattgacaatcctggtttctccaat
gcttactctaatctgtgctgccaggtctggtatgctttcaaaatcagatg
ctgataggcaaggtggaacatgtccatcatcctagcacttagtaggctaa
tgtaggaggaccatgaatttaacaactatgatcctagcatttagtaggct
gatgtaggaggaccatgaattcaacaactataatcctagcacttagtagg
ctaagggaggaagaccatgaattcaacaacaacctgggccccatggtgat
aacctagatcaacaaaactatcaaaagctacagtgctagaaagtacatac
tttaccatgtcaggaagcttggataacttcagacttctgtagtcagggtt
tctacattagcatcttccaggtggcctccttctgatgccatttccgtcat
ttgagtcatgatttagtaagcaatgtatgtttagtttttttggtacaaac
tatcgaatctttgcaaataaatgattcactggagtttgagctagccatta
tctagatcccaagacaatcaagccccactcatacagcatgcccgttcact
gggatgttaacaagattttcatttctcttattgctccataactatgccct
ccataaagactttaaaaatttaaactctaagctctccagtaaactctcaa
tctcaatctcattcaatctcaactcaatccaattctctctcctcttctct
ttcccttctttgatagttcttttggga
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tatttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctcagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgccgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccgcccagaag
ctctgcgactctcgcccgtcccagaaacggctggcactctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaacctctcagccgggcagacccccgtgctc
tcaccaggaaggtggccggctatctcgagaattgctttttaaccatgaga
acttccagagagaaatcacagtaaatttgagccccatgttaagtaacaat
atgggtcgagccttgtttagatggacagaagccagttcaacatagcttag
cagaaaggggcatgtattcttgtatctggggggaggaatgtgtgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88923322_88924412
seq2: B6Ng01-034C05.b_49_1125

seq1  GAATTCCCATACTGTCAAGAGAATACACTAGAAAAACTTTGAAGATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATACTGTCAAGAGAATACACTAGAAAAACTTTGAAGATTAGT  50

seq1  TTAATTCATCTGTTAGCTTGATTTCCGTTTCTAGTGTGCTGACTCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCATCTGTTAGCTTGATTTCCGTTTCTAGTGTGCTGACTCTCCCT  100

seq1  GGAAGAGACTGGTATGGGCTCAGGACTCCCAAGATCGAGTTCTCAGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGACTGGTATGGGCTCAGGACTCCCAAGATCGAGTTCTCAGCATA  150

seq1  AAGTGCATGGGGCCTCTTTCCTAGGGGTGTGTTCCACTCCCTGCAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATGGGGCCTCTTTCCTAGGGGTGTGTTCCACTCCCTGCAGGATT  200

seq1  AGGGCTGGAACAGTGCACAGGATACTGGGGCATTCCAGGGAAGTCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAACAGTGCACAGGATACTGGGGCATTCCAGGGAAGTCTGGCT  250

seq1  CTAAGCACAAAGACTCTCCAGGTTGACTGACCAGTTTTAACTCTGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCACAAAGACTCTCCAGGTTGACTGACCAGTTTTAACTCTGGTGTT  300

seq1  CCAGAAGTCATTCGTTCCATCAGTTGATTGACAATCCTGGTTTCTCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCATTCGTTCCATCAGTTGATTGACAATCCTGGTTTCTCCAAT  350

seq1  GCTTACTCTAATCTGTGCTGCCAGGTCTGGTATGCTTTCAAAATCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTCTAATCTGTGCTGCCAGGTCTGGTATGCTTTCAAAATCAGATG  400

seq1  CTGATAGGCAAGGTGGAACATGTCCATCATCCTAGCACTTAGTAGGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGCAAGGTGGAACATGTCCATCATCCTAGCACTTAGTAGGCTAA  450

seq1  TGTAGGAGGACCATGAATTTAACAACTATGATCCTAGCATTTAGTAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGGACCATGAATTTAACAACTATGATCCTAGCATTTAGTAGGCT  500

seq1  GATGTAGGAGGACCATGAATTCAACAACTATAATCCTAGCACTTAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGAGGACCATGAATTCAACAACTATAATCCTAGCACTTAGTAGG  550

seq1  CTAAGGGAGGAAGACCATGAATTCAACAACAACCTGGGCCCCATGGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAGGAAGACCATGAATTCAACAACAACCTGGGCCCCATGGTGAT  600

seq1  AACCTAGATCAACAAAACTATCAAAAGCTACAGTGCTAGAAAGTACATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGATCAACAAAACTATCAAAAGCTACAGTGCTAGAAAGTACATAC  650

seq1  TTTACCATGTCAGGAAGCTTGGATAACTTCAGACTTCTGTAGTCAGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATGTCAGGAAGCTTGGATAACTTCAGACTTCTGTAGTCAGGGTT  700

seq1  TCTACATTAGCATCTTCCAGGTGGCCTCCTTCTGATGCCATTTCCGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTAGCATCTTCCAGGTGGCCTCCTTCTGATGCCATTTCCGTCAT  750

seq1  TTGAGTCATGATTTAGTAAGCAATGTATGTTTAGTTTTTTTGGTACAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCATGATTTAGTAAGCAATGTATGTTTAGTTTTTTTGGTACAAAC  800

seq1  TATCGAATCTTTGCAAATAAATGATTCACTGGAGTTTGAGCTAGCCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGAATCTTTGCAAATAAATGATTCACTGGAGTTTGAGCTAGCCATTA  850

seq1  TCTAGATCCCAAGACAATCAAGCCCCACTCATACAGCATGCCCGTTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATCCCAAGACAATCAAGCCCCACTCATACAGCATGCCCGTTCACT  900

seq1  GGGATGTTAACAAGAATTTTCATTTCTCTTATTGCTCCATAACTATGCCC  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGATGTTAACAAG-ATTTTCATTTCTCTTATTGCTCCATAACTATGCCC  949

seq1  TCCATAGAAGACTTTAAAGACTTTAAACTCTAGGCTCTCCAGTAAACCTC  1000
      |||||| ||||||||||| | ||||||||||| ||||||||||||| |||
seq2  TCCATA-AAGACTTTAAA-AATTTAAACTCTAAGCTCTCCAGTAAA-CTC  996

seq1  TCAATCTCAATCTCAATCTCAATCTCAATCTCAATCTCAATCTCTCTCTC  1050
      |||||||||||||||   |||||||||| ||||||| ||||   ||||||
seq2  TCAATCTCAATCTCA--TTCAATCTCAA-CTCAATC-CAAT---TCTCTC  1039

seq1  TCTCTCTCTCTCTCTCCTCTCTCTGTATGTTTCTTTTGGGA  1091
      || |||| ||||| |||  ||| || ||  |||||||||||
seq2  TC-CTCT-TCTCTTTCCCTTCTTTG-ATAGTTCTTTTGGGA  1077

seq1: chr8_89091145_89091716
seq2: B6Ng01-034C05.g_453_1017 (reverse)

seq1  TCCCCACAACATTCCTCCCCCCAGATACAAGAAATACATGCCCCTTTGCT  50
      ||||||| ||||||||||||||||||||||| ||||||||||||||| ||
seq2  TCCCCAC-ACATTCCTCCCCCCAGATACAAG-AATACATGCCCCTTT-CT  47

seq1  GCTAAGCTATGTTGAACTGGCTTCTGTCCATCTTAAACAAAGGCTCGACC  100
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GCTAAGCTATGTTGAACTGGCTTCTGTCCATC-TAAAC-AAGGCTCGACC  95

seq1  CATATTGTTACTTAAACATGGGGCTCAAATTT-CTGTGATTTCTCTCTGG  149
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  CATATTGTTACTT-AACATGGGGCTCAAATTTACTGTGATTTCTCTCTGG  144

seq1  AAGTTCTCATGGTTAAAAAGCAATTCTCGAGATAGCCGGCCACCTTCCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCATGGTTAAAAAGCAATTCTCGAGATAGCCGGCCACCTTCCTG  194

seq1  GTGAGAGCACGGGGGTCTGCCCGGCCTGAGAGGTTTGTGGCACAGGCGCC  249
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GTGAGAGCACGGGGGTCTGCCCGG-CTGAGAGG-TTGTGGCACAGGCGCC  242

seq1  GGCGGGAGCCTTCTTGGCTCCGGGACTCCGCGGAGGGCAGGCTGCACGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGAGCCTTCTTGGCTCCGGGACTCCGCGGAGGGCAGGCTGCACGGG  292

seq1  TGACCGTGTGGAATACAGAGTGCCAGCCGTTTCTGGGACGGGCGAGAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTGTGGAATACAGAGTGCCAGCCGTTTCTGGGACGGGCGAGAGTC  342

seq1  GCAGAGCTTCTGGGCGGCGCCATCTTCAGCTCCAGACAACCAGCCACCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTCTGGGCGGCGCCATCTTCAGCTCCAGACAACCAGCCACCTT  392

seq1  CCCGGCAAGAGCCACAGAGCTTCTGAGGCGGCGCCATCCTCAGCTCCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCAAGAGCCACAGAGCTTCTGAGGCGGCGCCATCCTCAGCTCCAGA  442

seq1  CGGCCGGCCTCCTTCCGGACAAGAGCCACAGAGCTTCTGAGGCGGCGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGGCCTCCTTCCGGACAAGAGCCACAGAGCTTCTGAGGCGGCGACA  492

seq1  TCTTCGACTCCAGACAACTGGCCACCTTCCTGGCCAAAGCAACACAGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGACTCCAGACAACTGGCCACCTTCCTGGCCAAAGCAACACAGCTT  542

seq1  CTGGGAAAGATCCTGTTTTGGGC  572
      |||||||||||||||||||||||
seq2  CTGGGAAAGATCCTGTTTTGGGC  565