BAC Information

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BAC

Clone NameB6Ng01-038D09
Chromosome8 (Build37)
Map Location 49,300,849 - 49,471,015
singlet/doubletdoublet
Overlap geneOdz3
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038D09.bB6Ng01-038D09.g
ACCDH865844DH865845
length1,045527
definitionDH865844|Mus musculus domesticus DNA, BAC clone: B6Ng01-038D09, 5' end.DH865845|Mus musculus domesticus DNA, BAC clone: B6Ng01-038D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,469,969 - 49,471,015)(49,300,849 - 49,301,381)
sequence
gaattccaacccagttttcaccacagcatcttcccgtcacgctttgacgc
gttacattttacctgagctggagaagggagcgttctatgctactgtgatt
tcattgcatcataggaaagctgtgttgactgaattttagaggagggctat
tgtgaagctgaagttttggaatcaatattttatttttatagtcatgaaat
taagacacatttaagcctgattcagtggtagatggagtcacagagtaaaa
cagcttccctgaggggaagggcaaaaatcatcctttcattaaacgacctt
caagaatatcctacgtttttgaaccccaaaagaagacagagctagcaaaa
actaagctctacaaaactggggggtctgtttgtttgtttgtttttcctta
ataacaacagtgctatgcatttctgcaatccttcaacactctctaaactt
tgttcatatcatttggggttttatcctggctttcagtaggaaatcttctt
ggtgaatttttcacaaaacattttccatgtctttgtgttagaacatggat
gaggactggagatcacttaaaacccagcacagtctgctcccagcttggta
ataccaacccagcgatttctgcttgaactcactgagaaaagcctacaata
cttgctgctgatttgtgacagtgtagagtttttgctgcttttcattagca
tatttggttttgagttcatcgtgttttgtattatttccacagaaagaaag
cacttcccagatcagaaaggtacaagctcttatgcccctcctttccgctg
agaatagtttatgttgctcttagcttggtatgaagccagctaaaataaat
aatatcaaaaatcctgtatttaagcaaattttttatttgaatatagggat
ctcttgacttggaaaatagtctagattgctaacaattagaaataatttta
aattcaattcatcttcagcttgtgcctagtgataaacagcttttttggga
catcgagtaatggtcctttgtctaagttattgtggtgtgtgtgtg
ttaggaatagggacaggacgtttaagggtttcgaaagccagggcgcttta
gacctggtaaagaagaagaagaggtgatggttagtgtggccagaggaagg
gccatgagagacctctgcctaggagagatgcaagctagaaagggactctg
tggccttggtgcctcacctggtcatgaggatgagctctgagagtggagcc
tggcatctccctaaaacagagcccagaagggtaaacagagaaggtacaac
ctgtgacgtacaccagaggactgcagacagcatcctggggagcacgtctg
cagtagggtgggaattcccagcacgaaggcctggctcccagtgtgggtct
cttccgggcaatcccattggcctgtgcagggcatacacttgcctcccgta
gcctcactagccaagtgcgggtggacaagcttttctttaggacggaggcc
ccacgacgttgcaggcaccagcaaggatggtacccaaaaggatacctttg
ggggttggtgagaatagggtggtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_49469969_49471015
seq2: B6Ng01-038D09.b_47_1091 (reverse)

seq1  CACACACACACACACAATAACCTAAGACAGA-GACCATTACTCGATGTCA  49
      ||||||||||| |||||||| || ||||| | ||||||||||||||||| 
seq2  CACACACACAC-CACAATAA-CTTAGACAAAGGACCATTACTCGATGTCC  48

seq1  CAAAAAAGCTGTTTATCACTAGGCACAAGCTGAAGATGAATTGAATTTAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGCTGTTTATCACTAGGCACAAGCTGAAGATGAATTGAATTTAA  98

seq1  AATTATTTCTAATTGTTAGCAATCTAGACTATTTTCCAAGTCAAGAGATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCTAATTGTTAGCAATCTAGACTATTTTCCAAGTCAAGAGATC  148

seq1  CCTATATTCAAATAAAAAAATTTGCTTAAATACAGGATTTTTGATATTAT  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTATATTCAAAT-AAAAAATTTGCTTAAATACAGGATTTTTGATATTAT  197

seq1  TTATTTTAGCTGGCTTCATACCAAGCTAAGAGCAACATAAACTATTCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGCTGGCTTCATACCAAGCTAAGAGCAACATAAACTATTCTCA  247

seq1  GCGGAAAGGAGGGGCATAAGAGCTTGTACCTTTCTGATCTGGGAAGTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAAGGAGGGGCATAAGAGCTTGTACCTTTCTGATCTGGGAAGTGCT  297

seq1  TTCTTTCTGTGGAAATAATACAAAACACGATGAACTCAAAACCAAATATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGTGGAAATAATACAAAACACGATGAACTCAAAACCAAATATG  347

seq1  CTAATGAAAAGCAGCAAAAACTCTACACTGTCACAAATCAGCAGCAAGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAAAGCAGCAAAAACTCTACACTGTCACAAATCAGCAGCAAGTA  397

seq1  TTGTAGGCTTTTCTCAGTGAGTTCAAGCAGAAATCGCTGGGTTGGTATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCTTTTCTCAGTGAGTTCAAGCAGAAATCGCTGGGTTGGTATTA  447

seq1  CCAAGCTGGGAGCAGACTGTGCTGGGTTTTAAGTGATCTCCAGTCCTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGGGAGCAGACTGTGCTGGGTTTTAAGTGATCTCCAGTCCTCAT  497

seq1  CCATGTTCTAACACAAAGACATGGAAAATGTTTTGTGAAAAATTCACCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTAACACAAAGACATGGAAAATGTTTTGTGAAAAATTCACCAA  547

seq1  GAAGATTTCCTACTGAAAGCCAGGATAAAACCCCAAATGATATGAACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTCCTACTGAAAGCCAGGATAAAACCCCAAATGATATGAACAAA  597

seq1  GTTTAGAGAGTGTTGAAGGATTGCAGAAATGCATAGCACTGTTGTTATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGAGTGTTGAAGGATTGCAGAAATGCATAGCACTGTTGTTATTA  647

seq1  AGGAAAAACAAACAAACAAACAGACCCCCCAGTTTTGTAGAGCTTAGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAACAAACAAACAAACAGACCCCCCAGTTTTGTAGAGCTTAGTTT  697

seq1  TTGCTAGCTCTGTCTTCTTTTGGGGTTCAAAAACGTAGGATATTCTTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCTCTGTCTTCTTTTGGGGTTCAAAAACGTAGGATATTCTTGAA  747

seq1  GGTCGTTTAATGAAAGGATGATTTTTGCCCTTCCCCTCAGGGAAGCTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTTAATGAAAGGATGATTTTTGCCCTTCCCCTCAGGGAAGCTGTT  797

seq1  TTACTCTGTGACTCCATCTACCACTGAATCAGGCTTAAATGTGTCTTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGTGACTCCATCTACCACTGAATCAGGCTTAAATGTGTCTTAAT  847

seq1  TTCATGACTATAAAAATAAAATATTGATTCCAAAACTTCAGCTTCACAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTATAAAAATAAAATATTGATTCCAAAACTTCAGCTTCACAAT  897

seq1  AGCCCTCCTCTAAAATTCAGTCAACACAGCTTTCCTATGATGCAATGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCTCTAAAATTCAGTCAACACAGCTTTCCTATGATGCAATGAAA  947

seq1  TCACAGTAGCATAGAACGCTCCCTTCTCCAGCTCAGGTAAAATGTAACGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTAGCATAGAACGCTCCCTTCTCCAGCTCAGGTAAAATGTAACGC  997

seq1  GTCAAAGCGTGACGGGAAGATGCTGTGGTGAAAACTGGGTTGGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCGTGACGGGAAGATGCTGTGGTGAAAACTGGGTTGGAATTC  1045

seq1: chr8_49300849_49301381
seq2: B6Ng01-038D09.g_68_600

seq1  GAATTCTTAGGAATAGGGACAGGACGTTTAAGGGTTTCGAAAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAATAGGGACAGGACGTTTAAGGGTTTCGAAAGCCAGGGC  50

seq1  GCTTTAGACCTGGTAAAGAAGAAGAAGAGGTGATGGTTAGTGTGGCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGACCTGGTAAAGAAGAAGAAGAGGTGATGGTTAGTGTGGCCAGA  100

seq1  GGAAGGGCCATGAGAGACCTCTGCCTAGGAGAGATGCAAGCTAGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCCATGAGAGACCTCTGCCTAGGAGAGATGCAAGCTAGAAAGGG  150

seq1  ACTCTGTGGCCTTGGTGCCTCACCTGGTCATGAGGATGAGCTCTGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGGCCTTGGTGCCTCACCTGGTCATGAGGATGAGCTCTGAGAGT  200

seq1  GGAGCCTGGCATCTCCCTAAAACAGAGCCCAGAAGGGTAAACAGAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGCATCTCCCTAAAACAGAGCCCAGAAGGGTAAACAGAGAAGG  250

seq1  TACAACCTGTGACGTACACCAGAGGACTGCAGACAGCATCCTGGGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCTGTGACGTACACCAGAGGACTGCAGACAGCATCCTGGGGAGCA  300

seq1  CGTCTGCAGTAGGGTGGGAATTCCCAGCACGAAGGCCTGGCTCCCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCAGTAGGGTGGGAATTCCCAGCACGAAGGCCTGGCTCCCAGTGT  350

seq1  GGGTCTCTTCCGGGCAATCCCATTGGCCTGTGCAGGGCATACACTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTTCCGGGCAATCCCATTGGCCTGTGCAGGGCATACACTTGCCT  400

seq1  CCCGTAGCCTCACTAGCCAAGTGCGGGTGGACAAGCTTTTCTTTAGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGCCTCACTAGCCAAGTGCGGGTGGACAAGCTTTTCTTTAGGACG  450

seq1  GAGGCCCCACGACGTTGCAGGCACCAGCAAGGATGGTACCCAAAAGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCACGACGTTGCAGGCACCAGCAAGGATGGTACCCAAAAGGATA  500

seq1  CCTTTGGGGGTTGGTGAGAATAGGGTGGTGTTT  533
      |||||||||||||||||||||||||||||||||
seq2  CCTTTGGGGGTTGGTGAGAATAGGGTGGTGTTT  533