BAC Information

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BAC

Clone NameB6Ng01-038O16
Chromosome8 (Build37)
Map Location 124,215,261 - 124,355,905
singlet/doubletdoublet
Overlap geneJph3, Klhdc4
Upstream geneIrf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14
Downstream geneSlc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038O16.bB6Ng01-038O16.g
ACCDH866336DH866337
length4321,028
definitionDH866336|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O16, 5' end.DH866337|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,215,261 - 124,215,697)(124,354,874 - 124,355,905)
sequence
aaggacatcctcagctgtacagcaaattcaaggccaaactgggctacaag
agaccctgtctcaaaacaaaaacaaacaaaaaagtagaccatgcatgggg
tcatcatgcccctttagtccccactctagtgtcttaggatttctgctgct
gtgaagagacaccgtgacaactctttttaagggacaagatttaattgggg
ctggcttacagattcagaggatcagtccattatcatcatagcagaaagca
tggcagcatccatgcaggcatggtgctggagaaggagctaagagttctac
atcttcatctgaaggtaaccaggagtgcctgacccatgggctgctagaaa
gaagctctgtttcacagtgggtggagcctgagcataggaggagaccttaa
atcccaccccacattgacacacttcctccaat
gaattctctcctccaggcatgatatttctgtctctatcttgaaatcagag
ctgttttggctgggcagtgtggctcatgcctttagtcacagcacttggga
ggtcactgaatatctgagttcaaggctagcctagtctaaagagagggttt
cagaacagccagggatacacagaaaaacctgtcgtaaaaaaacaaaaaca
aaaacaaacaacagccaaaaaagaaaataggggagggaggaaataaatca
aagcagttttattctgtgtctttcctagtaatgaaaattttaacctctgg
tgaatcactgtgacctgtattaagagcttcccaatttagctttgagattc
tttcagataataaaagcattaatccctgcaacttccagatctttctaaat
cttccgcagaggatatactttccctttcagccctgaagaaggaacagtgc
tatatattgcgaacagtggagaatgttaatagcctcttacaacattgggt
cttttcattttctcctgcagaaggaaggggcgaccacagactctcactag
agactccaaccgctcctcgctcagccgcctcagctgccaggagcttagtg
ccaggctgtacaggaggtgggaggtggcttgggtaccagtgatacaatgt
ttataaattcctcatccacccatgctaggtgagacgtttatgagacgtgg
ctgccttcgagtcacctgtgctcctgtaaatcaaaacaaacaactcagta
cttcaacaagctactgagtccaagctactggacttggaataatttctttg
gtcttttagatctctctctctctctctctctctctctcttggatctatct
atgtatctatctatgtatccatctatgatctatcatctatctatattttt
tagatagaggggttttctctgtgtggccttggctgtctgaaactctcttt
tatagatcaggctggccttgaattcatagagatccactatctctgcttct
tgagtgccaggattcaaggctgggctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124215261_124215697
seq2: B6Ng01-038O16.b_44_480

seq1  GAATTCAAGGACATCCTCAGCTGTACAGCAAATTCAAGGCCAAACTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACATCCTCAGCTGTACAGCAAATTCAAGGCCAAACTGGGC  50

seq1  TACAAGAGACCCTGTCTCAAAACAAAAACAAACAAAAAAGTAGACCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGACCCTGTCTCAAAACAAAAACAAACAAAAAAGTAGACCATGC  100

seq1  ATGGGGTCATCATGCCCCTTTAGTCCCCACTCTAGTGTCTTAGGATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCATCATGCCCCTTTAGTCCCCACTCTAGTGTCTTAGGATTTCT  150

seq1  GCTGCTGTGAAGAGACACCGTGACAACTCTTTTTAAGGGACAAGATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGAAGAGACACCGTGACAACTCTTTTTAAGGGACAAGATTTAA  200

seq1  TTGGGGCTGGCTTACAGATTCAGAGGATCAGTCCATTATCATCATAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGGCTTACAGATTCAGAGGATCAGTCCATTATCATCATAGCAG  250

seq1  AAAGCATGGCAGCATCCAGGCAGGCATGGTGCTGGAGAAGGAGCTAAGAG  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGCATGGCAGCATCCATGCAGGCATGGTGCTGGAGAAGGAGCTAAGAG  300

seq1  TTCTACATCTTCATCTGAAGGTAACCAGGAGTGCCTGACCCATGGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTACATCTTCATCTGAAGGTAACCAGGAGTGCCTGACCCATGGGCTGC  350

seq1  TAGAAAGAAGCTCTGTTTCACAGTGGGTGGAGCCTGAGCATAGGAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAAGCTCTGTTTCACAGTGGGTGGAGCCTGAGCATAGGAGGAGA  400

seq1  CCTTAAAGCCCACCCCACAGTGACACACTTCCTCCAA  437
      ||||||| ||||||||||| |||||||||||||||||
seq2  CCTTAAATCCCACCCCACATTGACACACTTCCTCCAA  437

seq1: chr8_124354874_124355905
seq2: B6Ng01-038O16.g_68_1095 (reverse)

seq1  ATAGCACAGCCTTGAATCCTGGCACTCAGGAAGCAGAGATAGTTGGATCT  50
      ||||| |||||||||||||||||||||| ||||||||||||| |||||||
seq2  ATAGCCCAGCCTTGAATCCTGGCACTCAAGAAGCAGAGATAG-TGGATCT  49

seq1  CTATGAATTCAAGGCCAGCCTGATCTAT-AAAGAGAGTTTCAGGACAGCC  99
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CTATGAATTCAAGGCCAGCCTGATCTATAAAAGAGAGTTTCA-GACAGCC  98

seq1  AAGGCCACACAGAGAAAA-CCCTCTATCATAAAAAAATATAGATAGATAG  148
      |||||||||||||||||| |||||||||   ||||||||||||||||| |
seq2  AAGGCCACACAGAGAAAACCCCTCTATC--TAAAAAATATAGATAGAT-G  145

seq1  ATAGATACATAGATAGATACATAGATAGATACATAGATAGATACAAGAGA  198
      |||||| ||||||| ||||||||||||||||||||||||||| |||||||
seq2  ATAGAT-CATAGATGGATACATAGATAGATACATAGATAGATCCAAGAGA  194

seq1  GAGAGAGAGAGAGAGAGAGAGAGATCTAAAAGACCAAAGAAATTATTCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGATCTAAAAGACCAAAGAAATTATTCCA  244

seq1  AGTCCAGTAGCTTGGACTCAGTAGCTTGTTGAAGTACTGAGTTGTTTGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTAGCTTGGACTCAGTAGCTTGTTGAAGTACTGAGTTGTTTGTT  294

seq1  TTGATTTACAGGAGCACAGGTGACTCGAAGGCAGCCACGTCTCATAAACG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTACAGGAGCACAGGTGACTCGAAGGCAGCCACGTCTCATAAACG  344

seq1  TCTCACCTAGCATGGGTGGATGAGGAATTTATAAACATTGTATCACTGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTAGCATGGGTGGATGAGGAATTTATAAACATTGTATCACTGGT  394

seq1  ACCCAAGCCACCTCCCACCTCCTGTACAGCCTGGCACTAAGCTCCTGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGCCACCTCCCACCTCCTGTACAGCCTGGCACTAAGCTCCTGGCA  444

seq1  GCTGAGGCGGCTGAGCGAGGAGCGGTTGGAGTCTCTAGTGAGAGTCTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCGGCTGAGCGAGGAGCGGTTGGAGTCTCTAGTGAGAGTCTGTG  494

seq1  GTCGCCCCTTCCTTCTGCAGGAGAAAATGAAAAGACCCAATGTTGTAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCCCTTCCTTCTGCAGGAGAAAATGAAAAGACCCAATGTTGTAAGA  544

seq1  GGCTATTAACATTCTCCACTGTTCGCAATATATAGCACTGTTCCTTCTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTAACATTCTCCACTGTTCGCAATATATAGCACTGTTCCTTCTTC  594

seq1  AGGGCTGAAAGGGAAAGTATATCCTCTGCGGAAGATTTAGAAAGATCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAAAGGGAAAGTATATCCTCTGCGGAAGATTTAGAAAGATCTGG  644

seq1  AAGTTGCAGGGATTAATGCTTTTATTATCTGAAAGAATCTCAAAGCTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCAGGGATTAATGCTTTTATTATCTGAAAGAATCTCAAAGCTAAA  694

seq1  TTGGGAAGCTCTTAATACAGGTCACAGTGATTCACCAGAGGTTAAAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGCTCTTAATACAGGTCACAGTGATTCACCAGAGGTTAAAATTT  744

seq1  TCATTACTAGGAAAGACACAGAATAAAACTGCTTTGATTTATTTCCTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTAGGAAAGACACAGAATAAAACTGCTTTGATTTATTTCCTCCC  794

seq1  TCCCCTATTTTCTTTTTTGGCTGTTGTTTGTTTTTGTTTTTGTTTTTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATTTTCTTTTTTGGCTGTTGTTTGTTTTTGTTTTTGTTTTTTTA  844

seq1  CGACAGGTTTTTCTGTGTATCCCTGGCTGTTCTGAAACCCTCTCTTTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGGTTTTTCTGTGTATCCCTGGCTGTTCTGAAACCCTCTCTTTAGA  894

seq1  CTAGGCTAGCCTTGAACTCAGATATTCAGTGACCTCCCAAGTGCTGTGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTAGCCTTGAACTCAGATATTCAGTGACCTCCCAAGTGCTGTGAC  944

seq1  TAAAGGCATGAGCCACACTGCCCAGCCAAAACAGCTCTGATTTCAAGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGAGCCACACTGCCCAGCCAAAACAGCTCTGATTTCAAGATA  994

seq1  GAGACAGAAATATCATGCCTGGAGGAGAGAATTC  1032
      ||||||||||||||||||||||||||||||||||
seq2  GAGACAGAAATATCATGCCTGGAGGAGAGAATTC  1028