BAC Information

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BAC

Clone NameB6Ng01-039M08
Chromosome8 (Build37)
Map Location 114,212,919 - 114,349,429
singlet/doubletdoublet
Overlap geneCtrb1, Bcar1, Cfdp1
Upstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1
Downstream geneTmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039M08.bB6Ng01-039M08.g
ACCDH866940DH866941
length1,120398
definitionDH866940|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M08, 5' end.DH866941|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,348,306 - 114,349,429)(114,212,919 - 114,213,322)
sequence
gaattcacccagcttaagggtgggaatggtttgtgaagagagcactgtga
tcatctagagaggactaaagtctgctggttagtgacagcagtgagcgctg
agcatgcactagagggcagaagtcaccctgggaaagcaagcactcaggca
caccaagccgttctaagactggacggtgctatttatttttgtctgcctaa
ttagtctttgataagagatttctttgttttgttttctttaatatatctag
atatattaaattacagtttggtttattttcagctctgctttggaaaatta
tttttccctctcatttctgtaacacacagttttatttgtggagatttttt
gttaattacagatagacatgctaacatggcacagccgtgaaggtgcttgt
tgtcaagcctcatgagagaagtgtccctcacgagtcgtccagtggcctcc
acacacagagtgtggtactcatgatcgtctccctctgccccaacagaaaa
aaataaatataaaaaaattaaagagagaaattgtgcgccgcctcagggac
tgcgttattaatactgatcctttgcaaatactctgctgctcatccccgcg
tgtttgtgtggaagttgctgtactcatctgttctaatgtcagggaagcac
accgttcacttggagcagacagtctgtgtctatgttctcaccaaagttct
ggtcaaagaatcttggtactattttgtggatggttatgagcatatagcaa
gactcacatttattaaatttgtaatttcttgtggatttttcttacaggag
aggctgagcagttgtgttctaattattttggttgaggatgaaaacgaggc
tgacctgcattcgttatatccagttacatggtccggggctcttgccaaaa
ccccactactcaagcaaagctattgtaaatgcaagatgaaacaattaaaa
aaatgttttaaatgtatttatatgaatgctcagctgcatatacaccctgg
aggcagaagagggcatcagactcccttaagatggttgtgagccaccatat
ggttgctgggattgacctcatgactcttggagagcagccacctgcctcta
acctgggagccctcctctcc
taagaccggccccagctccactgtgttcctgtcctttaaggagccaaggg
cttcttcccgggcgtgctcgcccatcttgtgaactgagcccctgacgcat
ccatcagtctgtgtacctgagcgattttcaggacctggacattctcttca
tcggagccctgatcaaactctccagctaccaccacatcggttgtcctagg
cattgagacacataggggtgaagacgaagaatggggtctgatcccttccc
catacccaaacaaggctggaagcagaaccccaacgtagcctgggactcac
ttgaccccgcagtgggcagcagtgaccacccagttttcgctgatgaggga
gcccccgcagaaatggaagccagttctgtcctgggggggggggggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114348306_114349429
seq2: B6Ng01-039M08.b_45_1164 (reverse)

seq1  GGAGA-GATGGCTCACAGGTTAAGAGCA-GTGGCTGCTCTTCCAGAAGTC  48
      ||||| || ||||| |||||||   ||| |||||||||| ||||  ||||
seq2  GGAGAGGAGGGCTCCCAGGTTAGAGGCAGGTGGCTGCTC-TCCAAGAGTC  49

seq1  ATGAGTTCAATTCCCAGCAACCATATGGTGGCTCACAACCATCTATAAGG  98
      ||||| |||| ||||||||||||||||||||||||||||||||| |||||
seq2  ATGAGGTCAA-TCCCAGCAACCATATGGTGGCTCACAACCATCT-TAAGG  97

seq1  GAGTCTGATGCCCTCTTCTGGCCTCCA-GGTGTATATGCAGCTGAGCATT  147
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GAGTCTGATGCCCTCTTCT-GCCTCCAGGGTGTATATGCAGCTGAGCATT  146

seq1  CATATTAAATACATTTAAAAACATTTTTTTTAATTGTTTCATCTTGCATT  197
      |||| ||||||||||| |||||| ||||||||||||||||||||||||||
seq2  CATA-TAAATACATTT-AAAACA-TTTTTTTAATTGTTTCATCTTGCATT  193

seq1  TACAATAGCTTTGCTTGAGTAGTGGGGTTTTGGCAAGAGCCCCGGACCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGCTTTGCTTGAGTAGTGGGGTTTTGGCAAGAGCCCCGGACCAT  243

seq1  GTAACTGGATATAACGAATGCAGGTCAGCCTCGTTTTCATCCTCAACCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGGATATAACGAATGCAGGTCAGCCTCGTTTTCATCCTCAACCAA  293

seq1  AATAATTAGAACACAACTGCTCAGCCTCTCCTGTAAGAAAAATCCACAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAGAACACAACTGCTCAGCCTCTCCTGTAAGAAAAATCCACAAG  343

seq1  AAATTACAAATTTAATAAATGTGAGTCTTGCTATATGCTCATAACCATCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAAATTTAATAAATGTGAGTCTTGCTATATGCTCATAACCATCC  393

seq1  ACAAAATAGTACCAAGATTCTTTGACCAGAACTTTGGTGAGAACATAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAGTACCAAGATTCTTTGACCAGAACTTTGGTGAGAACATAGAC  443

seq1  ACAGACTGTCTGCTCCAAGTGAACGGTGTGCTTCCCTGACATTAGAACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTCTGCTCCAAGTGAACGGTGTGCTTCCCTGACATTAGAACAG  493

seq1  ATGAGTACAGCAACTTCCACACAAACACGCGGGGATGAGCAGCAGAGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACAGCAACTTCCACACAAACACGCGGGGATGAGCAGCAGAGTAT  543

seq1  TTGCAAAGGATCAGTATTAATAACGCAGTCCCTGAGGCGGCGCACAATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGGATCAGTATTAATAACGCAGTCCCTGAGGCGGCGCACAATTT  593

seq1  CTCTCTTTAATTTTTTTATATTTATTTTTTTCTGTTGGGGCAGAGGGAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTAATTTTTTTATATTTATTTTTTTCTGTTGGGGCAGAGGGAGA  643

seq1  CGATCATGAGTACCACACTCTGTGTGTGGAGGCCACTGGACGACTCGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCATGAGTACCACACTCTGTGTGTGGAGGCCACTGGACGACTCGTGA  693

seq1  GGGACACTTCTCTCATGAGGCTTGACAACAAGCACCTTCACGGCTGTGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTTCTCTCATGAGGCTTGACAACAAGCACCTTCACGGCTGTGCC  743

seq1  ATGTTAGCATGTCTATCTGTAATTAACAAAAAATCTCCACAAATAAAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCATGTCTATCTGTAATTAACAAAAAATCTCCACAAATAAAACT  793

seq1  GTGTGTTACAGAAATGAGAGGGAAAAATAATTTTCCAAAGCAGAGCTGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTACAGAAATGAGAGGGAAAAATAATTTTCCAAAGCAGAGCTGAA  843

seq1  AATAAACCAAACTGTAATTTAATATATCTAGATATATTAAAGAAAACAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAAACTGTAATTTAATATATCTAGATATATTAAAGAAAACAAA  893

seq1  ACAAAGAAATCTCTTATCAAAGACTAATTAGGCAGACAAAAATAAATAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAATCTCTTATCAAAGACTAATTAGGCAGACAAAAATAAATAGC  943

seq1  ACCGTCCAGTCTTAGAACGGCTTGGTGTGCCTGAGTGCTTGCTTTCCCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCCAGTCTTAGAACGGCTTGGTGTGCCTGAGTGCTTGCTTTCCCAG  993

seq1  GGTGACTTCTGCCCTCTAGTGCATGCTCAGCGCTCACTGCTGTCACTAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTCTGCCCTCTAGTGCATGCTCAGCGCTCACTGCTGTCACTAAC  1043

seq1  CAGCAGACTTTAGTCCTCTCTAGATGATCACAGTGCTCTCTTCACAAACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGACTTTAGTCCTCTCTAGATGATCACAGTGCTCTCTTCACAAACC  1093

seq1  ATTCCCACCCTTAAGCTGGGTGAATTC  1124
      |||||||||||||||||||||||||||
seq2  ATTCCCACCCTTAAGCTGGGTGAATTC  1120

seq1: chr8_114212919_114213322
seq2: B6Ng01-039M08.g_66_469

seq1  GAATTCTAAGACCGGCCCCAGCTCCACTGTGTTCCTGTCCTTTAAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGACCGGCCCCAGCTCCACTGTGTTCCTGTCCTTTAAGGAGC  50

seq1  CAAGGGCTTCTTCCCGGGCGTGCTCGCCCATCTTGTGAACTGAGCCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTTCTTCCCGGGCGTGCTCGCCCATCTTGTGAACTGAGCCCCTG  100

seq1  ACGCATCCATCAGTCTGTGTACCTGAGCGATTTTCAGGACCTGGACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATCCATCAGTCTGTGTACCTGAGCGATTTTCAGGACCTGGACATTC  150

seq1  TCTTCATCGGAGCCCTGATCAAACTCTCCAGCTACCACCACATCGGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCGGAGCCCTGATCAAACTCTCCAGCTACCACCACATCGGTTGT  200

seq1  CCTAGGCATTGAGACACATAGGGGTGAAGACGAAGAATGGGGTCTGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCATTGAGACACATAGGGGTGAAGACGAAGAATGGGGTCTGATCC  250

seq1  CTTCCCCATACCCAAACAAGGCTGGAAGCAGAACCCCAACGTAGCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCATACCCAAACAAGGCTGGAAGCAGAACCCCAACGTAGCCTGGG  300

seq1  ACTCACTTGACCCCGCAGTGGGCAGCAGTGACCACCCAGTTTTCGCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTGACCCCGCAGTGGGCAGCAGTGACCACCCAGTTTTCGCTGAT  350

seq1  GAGGGAGCCCCCGCAGAAATGGAAGCCAGTTCTGTCCTGGGGGGGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCCCCCGCAGAAATGGAAGCCAGTTCTGTCCTGGGGGGGGGGGG  400

seq1  GATG  404
      ||||
seq2  GATG  404