BAC Information

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BAC

Clone NameB6Ng01-040F07
Chromosome8 (Build37)
Map Location 59,509,664 - 59,665,451
singlet/doubletdoublet
Overlap genenone
Upstream geneGlra3, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F07.bB6Ng01-040F07.g
ACCDH867333DH867334
length1,040780
definitionDH867333|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F07, 5' end.DH867334|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,509,664 - 59,510,713)(59,664,882 - 59,665,451)
sequence
gaattccagaccccatctctatggaaagattctgattggaattcctataa
tgcccaaaacggttaagttgagtaattactctggctttccttttcaagac
catgccatgaggagcattgttatggcctggaatgcctaagagttttgatt
catgtcactttatgtgattcttcatgattactgggaagctagaccaagat
gctacatgaaaattgttagatagactattcctatgggtgagagaagaatg
acaccttgtgctgtgtcctacagagaatgatcttcttaagatgtactgaa
atcttgtctctgaaaataaaattattgacttttgtttcatacccacattg
aactataactaataggatcttgaagtttcagaaaacataatggtgacaaa
gtaagttatatctgttgatgattcaacatcatctactattaagcatctta
taatgaagtagacctaagtagctggatcccctgaccttcagaggaaatcc
tagaaaaagtcaacatgttcagtgtcatcactaatagctgctgttatcac
tgctgacatgaacttatgaactattaaataagcttggcataatttatagt
catcgagatgtcagatacgtgaactcatcctatctccaattgacttatag
gtccaatgtttttcttccttacaaaacagtgtcattacattagctgaaaa
ctgaaatgtagcttaaagtcaaggggataaatccattagagctattctta
gatgtttaagaacacagtgctcaacctatcaccaagaaacaatgcctctt
ctttaaaaaaaaaaaaaaaaaaacctctcactatcagagcacatggggga
gtcttgccaagacaaacagaggggaaaagatgggagagcaataaaaaaat
agttaaagatcagaagggagttgtagctaaattattgtcaggagacataa
tgtttcctctgtgttttcagtgttgtttgggaatgtgcccaaggcttcct
aggagttgacaaaaaaaaaaattagctgttgggtatatca
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggttatctat
cttgttgatttttctcaaaaaaacaactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_59509664_59510713
seq2: B6Ng01-040F07.b_46_1085

seq1  GAATTCCAGACCCCATCTCTATGGAAAGATTCTGATTGGAATTCCTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCCCATCTCTATGGAAAGATTCTGATTGGAATTCCTATAA  50

seq1  TGCCCAAAACGGTTAAGTTGAGTAATTACTCTGGCTTTCCTTTTCAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAAACGGTTAAGTTGAGTAATTACTCTGGCTTTCCTTTTCAAGAC  100

seq1  CATGCCATGAGGAGCATTGTTATGGCCTGGAATGCCTAAGAGTTTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATGAGGAGCATTGTTATGGCCTGGAATGCCTAAGAGTTTTGATT  150

seq1  CATGTCACTTTATGTGATTCTTCATGATTACTGGGAAGCTAGACCAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCACTTTATGTGATTCTTCATGATTACTGGGAAGCTAGACCAAGAT  200

seq1  GCTACATGAAAATTGTTAGATAGACTATTCCTATGGGTGAGAGAAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGAAAATTGTTAGATAGACTATTCCTATGGGTGAGAGAAGAATG  250

seq1  ACACCTTGTGCTGTGTCCTACAGAGAATGATCTTCTTAAGATGTACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGTGCTGTGTCCTACAGAGAATGATCTTCTTAAGATGTACTGAA  300

seq1  ATCTTGTCTCTGAAAATAAAATTATTGACTTTTGTTTCATACCCACATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCTCTGAAAATAAAATTATTGACTTTTGTTTCATACCCACATTG  350

seq1  AACTATAACTAATAGGATCTTGAAGTTTCAGAAAACATAATGGTGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAACTAATAGGATCTTGAAGTTTCAGAAAACATAATGGTGACAAA  400

seq1  GTAAGTTATATCTGTTGATGATTCAACATCATCTACTATTAAGCATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTATATCTGTTGATGATTCAACATCATCTACTATTAAGCATCTTA  450

seq1  TAATGAAGTAGACCTAAGTAGCTGGATCCCCTGACCTTCAGAGGAAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGTAGACCTAAGTAGCTGGATCCCCTGACCTTCAGAGGAAATCC  500

seq1  TAGAAAAAGTCAACATGTTCAGTGTCATCACTAATAGCTGCTGTTATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGTCAACATGTTCAGTGTCATCACTAATAGCTGCTGTTATCAC  550

seq1  TGCTGACATGAACTTATGAACTATTAAATAAGCTTGGCATAATTTATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACATGAACTTATGAACTATTAAATAAGCTTGGCATAATTTATAGT  600

seq1  CATCGAGATGTCAGATACGTGAACTCATCCTATCTCCAATTGACTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGATGTCAGATACGTGAACTCATCCTATCTCCAATTGACTTATAG  650

seq1  GTCCAATG-TTTTCTTCCTTACAAAACAGTGTCATTACATTAGCTGAAAA  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATGTTTTTCTTCCTTACAAAACAGTGTCATTACATTAGCTGAAAA  700

seq1  CTGAAATGTAGCTTAAAGTCAAGGGGATAAATCCATTAGAGCTATTCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTAGCTTAAAGTCAAGGGGATAAATCCATTAGAGCTATTCTTA  750

seq1  GATGTTTAAGAACACAGTGCTCAACCTATCACCAAGAAACAATGCCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTAAGAACACAGTGCTCAACCTATCACCAAGAAACAATGCCTCTT  800

seq1  CTTTAAAAAAAAAAAAAAAAAAAACCTCTCACTATCAGAGCACATGGGGG  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTT-AAAAAAAAAAAAAAAAAAACCTCTCACTATCAGAGCACATGGGGG  849

seq1  AGTCTTGCCAAAGACAAACAGAGGGGAAAAAGATGGGAGAGCAATAAAAA  899
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  AGTCTTGCC-AAGACAAACAGAGGGG-AAAAGATGGGAGAGCAATAAAAA  897

seq1  AATAGTTAAAGAATCAGAAGGGAGTTGTAGCTAAATTATTGTCAGGAAGA  949
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  AATAGTTAAAG-ATCAGAAGGGAGTTGTAGCTAAATTATTGTCAGG-AGA  945

seq1  CATAATGTTTCTCATGTGTTTTTCAGTGTTGTTTGGGAATTGTGCCCAAG  999
      |||||||||||   |||| |||||||||||||||||||| ||||||||||
seq2  CATAATGTTTCCTCTGTG-TTTTCAGTGTTGTTTGGGAA-TGTGCCCAAG  993

seq1  GCTTTCTTAGGAGTTGACAAAAAAAAAAAAAATAGCTGTTTGGTTATATC  1049
      || ||| |||||||||||  ||||||||||| |||||| |||| ||||||
seq2  GC-TTCCTAGGAGTTGAC--AAAAAAAAAAATTAGCTG-TTGGGTATATC  1039

seq1  A  1050
      |
seq2  A  1040

seq1: chr8_59664882_59665451
seq2: B6Ng01-040F07.g_281_850 (reverse)

seq1  GGAGTTGGTTCTTTGAG-AAAATCAACAAGATAGATAAACCCTTAGCTAG  49
      ||||||| || |||||| |||||||||||||||||| |||||||||||||
seq2  GGAGTTGTTTTTTTGAGAAAAATCAACAAGATAGAT-AACCCTTAGCTAG  49

seq1  ACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATG  99

seq1  AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGA  149

seq1  TCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAAT  199

seq1  GGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG  249

seq1  TTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT  299

seq1  AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGA  349

seq1  GTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTT  399

seq1  TTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCC  449

seq1  ACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAA  499

seq1  CTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAA  549

seq1  TTCTCGCTAACCGAATCCAAG  570
      |||||||||||||||||||||
seq2  TTCTCGCTAACCGAATCCAAG  570