BAC Information

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BAC

Clone NameB6Ng01-040M24
Chromosome8 (Build37)
Map Location 127,476,427 - 127,623,721
singlet/doubletdoublet
Overlap geneTsnax, Disc1
Upstream geneNup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1
Downstream geneSipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040M24.bB6Ng01-040M24.g
ACCDH867665DH867666
length969573
definitionDH867665|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M24, 5' end.DH867666|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,622,738 - 127,623,721)(127,476,427 - 127,476,998)
sequence
gaattccttcaatgatgaacagtgatatacaaaacgtatgccaaataaac
ccttccctcctcaactcgtttttccaccacggtgtttcatcagagcaaca
gaaaccctacctaagacaggaagggggaaagatattaaggtgggatgcag
aaatagaagataaacagagaggtgaggctagaagccaagggtccacggag
agaccagtgaatcgatatacccaggtcaggctgaggtcaaagggcagaaa
agagacactcgtgaggaacacacacaaacctacaagctgtctcatctccc
agtccagtaagggaagccccgtacttctttgctgtagcaggaactaagct
cttggagctgatagaaagctcaagatagagagccatagcagggtggcagg
cataatacagtcttgggattctagaaaagtggtgttccaacctaagactg
ggtcttacttatgaagaaactgtcaggaactgtggtacaaaaacaagcaa
gaagaattgtccagtgtgtgtctccacagtgtggcatacagttgggggtt
tggagatggtcaaccactgtacctgacctacagcgccttcttggatgctc
ttcatcttgctcctccatccttcctgactctgaacacaagccttgccacc
tggacccatgaggtctgccttttttcctcttgtggggagaagggcgtgca
gtaacagtacattgagcaaagtgaacagcggaggtagtctcagtcctggg
gctgctttcacagtccatcaggactgctcagcacactgggcctggagtcc
tccagccacaggcactcctgtggatccgagaaaaggcctttcatggatgt
caccaccctggtactgcttgggatccacttccttgcaatgatgacttcag
tgcactctcaaatagtaattgccaacaagagtgggtttttggttggttgt
tttggttggtggttggttg
gaattcttgttttacagagtgtgcctgggctacaaagcaagttcagggtc
agcctagacaagttagtgaggcccaaagtctccaagtagtaaagtaaaaa
cattgagcaatgcagctagataacagagaaggtgtgacatgggcaaagtc
tctttgtagcccaggctggcctcattcaggatcctcctgccacacactga
gttcctcagcctcctgcctagacacatgcgtgtgcgcgcgcacaaacata
tacgcacacaaaaatgacttggggttttttgttttgttttgtttgtttta
cgagacagggtttctctgtgtagccctggttgtcctggaactcactctag
actaggctggccttgaactcacaagactggcattccaagtacagaaatca
agcactgctgccaccacctaacctagttcagtttgctttcctcttctttt
atatttattttatttttattttatgtgtattggtgatttgactacatgta
tgtttgtataagggtgtcagatcccctgaaacaagagttacagagagctg
caagctgctctgtggttcctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_127622738_127623721
seq2: B6Ng01-040M24.b_46_1014 (reverse)

seq1  CAACCAACCAACCAACCAACCAACCAACCAAAACAAACAAACAAAAAACC  50
                  ||||||||| |||||||||||| ||| ||| |||||||
seq2  ------------CAACCAACC-ACCAACCAAAAC-AACCAACCAAAAACC  36

seq1  AACTCTTGTTGGCAAATAACTATTTGAGAGTGCACTGAAGTCATCATTGC  100
       |||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  CACTCTTGTTGGC-AATTACTATTTGAGAGTGCACTGAAGTCATCATTGC  85

seq1  AAGGAAGTGGATCCCAAGCAGTACCAGGGTGGTGACATCCATGAAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTGGATCCCAAGCAGTACCAGGGTGGTGACATCCATGAAAGGCC  135

seq1  TTTTCTCGGATCCACAGGAGTGCCTGTGGCTGGAGGACTCCAGGCCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCGGATCCACAGGAGTGCCTGTGGCTGGAGGACTCCAGGCCCAGT  185

seq1  GTGCTGAGCAGTCCTGATGGACTGTGAAAGCAGCCCCAGGACTGAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGCAGTCCTGATGGACTGTGAAAGCAGCCCCAGGACTGAGACTA  235

seq1  CCTCCGCTGTTCACTTTGCTCAATGTACTGTTACTGCACGCCCTTCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCTGTTCACTTTGCTCAATGTACTGTTACTGCACGCCCTTCTCCC  285

seq1  CACAAGAGGAAAAAAGGCAGACCTCATGGGTCCAGGTGGCAAGGCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGGAAAAAAGGCAGACCTCATGGGTCCAGGTGGCAAGGCTTGTG  335

seq1  TTCAGAGTCAGGAAGGATGGAGGAGCAAGATGAAGAGCATCCAAGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCAGGAAGGATGGAGGAGCAAGATGAAGAGCATCCAAGAAGGC  385

seq1  GCTGTAGGTCAGGTACAGTGGTTGACCATCTCCAAACCCCCAACTGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGTCAGGTACAGTGGTTGACCATCTCCAAACCCCCAACTGTATG  435

seq1  CCACACTGTGGAGACACACACTGGACAATTCTTCTTGCTTGTTTTTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGTGGAGACACACACTGGACAATTCTTCTTGCTTGTTTTTGTAC  485

seq1  CACAGTTCCTGACAGTTTCTTCATAAGTAAGACCCAGTCTTAGGTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCCTGACAGTTTCTTCATAAGTAAGACCCAGTCTTAGGTTGGAA  535

seq1  CACCACTTTTCTAGAATCCCAAGACTGTATTATGCCTGCCACCCTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTTTCTAGAATCCCAAGACTGTATTATGCCTGCCACCCTGCTAT  585

seq1  GGCTCTCTATCTTGAGCTTTCTATCAGCTCCAAGAGCTTAGTTCCTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTATCTTGAGCTTTCTATCAGCTCCAAGAGCTTAGTTCCTGCTA  635

seq1  CAGCAAAGAAGTACGGGGCTTCCCTTACTGGACTGGGAGATGAGACAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGAAGTACGGGGCTTCCCTTACTGGACTGGGAGATGAGACAGCT  685

seq1  TGTAGGTTTGTGTGTGTTCCTCACGAGTGTCTCTTTTCTGCCCTTTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTTGTGTGTGTTCCTCACGAGTGTCTCTTTTCTGCCCTTTGACC  735

seq1  TCAGCCTGACCTGGGTATATCGATTCACTGGTCTCTCCGTGGACCCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGACCTGGGTATATCGATTCACTGGTCTCTCCGTGGACCCTTGG  785

seq1  CTTCTAGCCTCACCTCTCTGTTTATCTTCTATTTCTGCATCCCACCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGCCTCACCTCTCTGTTTATCTTCTATTTCTGCATCCCACCTTAA  835

seq1  TATCTTTCCCCCTTCCTGTCTTAGGTAGGGTTTCTGTTGCTCTGATGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCCCCTTCCTGTCTTAGGTAGGGTTTCTGTTGCTCTGATGAAA  885

seq1  CACCGTGGTGGAAAAACGAGTTGAGGAGGGAAGGGTTTATTTGGCATACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGGTGGAAAAACGAGTTGAGGAGGGAAGGGTTTATTTGGCATACG  935

seq1  TTTTGTATATCACTGTTCATCATTGAAGGAATTC  984
      ||||||||||||||||||||||||||||||||||
seq2  TTTTGTATATCACTGTTCATCATTGAAGGAATTC  969

seq1: chr8_127476427_127476998
seq2: B6Ng01-040M24.g_70_642

seq1  GAATTCTTG-CTTACAGAGTGTGCCTGGGCTACAAAGCAAGTTCAGGGTC  49
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTTACAGAGTGTGCCTGGGCTACAAAGCAAGTTCAGGGTC  50

seq1  AGCCTAGACAAGTTAGTGAGGCCCAAAGTCTCCAAGTAGTAAAGTAAAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGACAAGTTAGTGAGGCCCAAAGTCTCCAAGTAGTAAAGTAAAAA  100

seq1  CATTGAGCAATGCAGCTAGATAACAGAGAAGGTGTGACATGGGCAAAGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCAATGCAGCTAGATAACAGAGAAGGTGTGACATGGGCAAAGTC  150

seq1  TCTTTGTAGCCCAGGCTGGCCTCATTCAGGATCCTCCTGCCACACACTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGCCCAGGCTGGCCTCATTCAGGATCCTCCTGCCACACACTGA  200

seq1  GTTCCTCAGCCTCCTGCCTAGACACATGCGTGTGCGCGCGCACAAACATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAGCCTCCTGCCTAGACACATGCGTGTGCGCGCGCACAAACATA  250

seq1  TACGCACACAAAAATGACTTGGGGTTTTTTGTTTTGTTTTGTTTGTTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCACACAAAAATGACTTGGGGTTTTTTGTTTTGTTTTGTTTGTTTTA  300

seq1  CGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACTCACTCTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACTCACTCTAG  350

seq1  ACTAGGCTGGCCTTGAACTCACAAGACTGGCATTCCAAGTACAGAAATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTGGCCTTGAACTCACAAGACTGGCATTCCAAGTACAGAAATCA  400

seq1  AGCACTGCTGCCACCACCTAACCTAGTTCAGTTTGCTTTCCTCTTCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCTGCCACCACCTAACCTAGTTCAGTTTGCTTTCCTCTTCTTTT  450

seq1  ATATTTATTTTATTTTTATTTTATGTGTATTGGTGATTTGACTACATGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTTATTTTTATTTTATGTGTATTGGTGATTTGACTACATGTA  500

seq1  TGTTTGTATAAGGGTGTCAGATCCCCTGAAACAAGAGTTACAGAGAGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATAAGGGTGTCAGATCCCCTGAAACAAGAGTTACAGAGAGCTG  550

seq1  CAAGCTGCTCTGTGGTTCCTGGG  572
      |||||||||||||||||||||||
seq2  CAAGCTGCTCTGTGGTTCCTGGG  573