BAC Information

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BAC

Clone NameB6Ng01-043C07
Chromosome8 (Build37)
Map Location 94,111,815 - 94,184,071
singlet/doubletdoublet
Overlap geneAJ237917, LOC100041254
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043C07.bB6Ng01-043C07.g
ACCDH869298DH869299
length1,0151,165
definitionDH869298|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C07, 5' end.DH869299|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,111,815 - 94,112,371)(94,182,891 - 94,184,071)
sequence
gaattcaacttttcacttctataacagggctgcaacatgctctatcaaat
gtatagtattgggcctgatacaattaaaaggctgccatgcagcaaaagga
acaactagccaagtaaagagacaccctataaaataggggggaacctcagc
gactgcacattgcccagaggagagtcacacaaagaatatataaagaactc
aaaaattatcaaaaaaccaaagcatctggtcaggaaatgggcatctcaaa
agatgacgtacacacggccagcatgcatgaaaatggctttaatattctta
gccatcagggaaatgcaggtcagaacagtattgagatttcatctctcatt
aagaaacagcacaggctagagatgtagcttgtgggtagagtgtttgctta
gcccacacaaagttgtggttcagttcccagcactgcataaaacaagtgtg
gttgttacagctgtaatcccaacactcaagaggtagaggcagaacaatca
gaagttcagggttatccttggctacaaagggctttccagggttatccttg
gctacaaagggctttccaggccagcctcagatacataagactttatctca
aaaaacaaacaaacaacaacaagcccacaaacaaaaaggaaataacaaat
gccagtaaaaatgttggtgtgtcctcatgcactactagtggcagtgtaaa
ttatcttagccactgtggaagtcaatataagaggatccttaagaaattag
ctgtggccaggcagtggtggtaatcccagcacatgggaagcagaggcagg
cagatctgtgagttcccggacagcctggtctacagagggagttccaggac
atgagaactacacagagaaaccccatctcaagcaaacaaatgaaagacag
agagagagaagaaaaacctaaacaggatccttttgtacccttccaggact
gtacccaaaggatctaagcagcataccacacccagtggttctaccgagcc
aggcctgcatcagtg
gaattctgggagagtgaaaaaaacataggggatttgccagggaagatatg
acaagacagacacatggtacctgagcaggaaaccagttatatggcagaat
gtagattagaataaatgggctatagtaagttatgatctagtcagagaaga
gcctagctatatggccaaggtatttgtaaagatactttgagtctgagtct
tatttccgggagcatggggctggaagaaccatgatcacttctacaggtac
tggcatgtccatgattctaccatgaagaagaaaaagcaggaggattgtga
gttcaaagctagcccgagttactgagagtccctctcatatatatatatat
gtatgtgtatacatctacttatgcatatgtatatgtagacatatatatac
acgaatgcttatgatatgtatatttatacacacatatccaaacacacact
tagccttagcactccaatccctctttgtagatctctgttactgctattat
gacattatggacaatggtacacatggtgagctaccctaggttacagccac
catgacagtctgtgttgtaaaggtgatcttatacattagcacgacagtct
tgcatcgctcttgcatctaacacagaagtggctctgaactgaatttcagc
gaagggcatggcttttcaccctccccctctagatctgtaaagtcaacact
catgtgagggatgagccccagccgtggcccactagccacctttctttctt
ccagctcagcatacctttttagcagtcagttctttttttaacatagccat
ttaaacccaggcttaaatcttagttgtatatagactatgtttgaagctca
caaaagaggaatctaataaacaaggctgtatggatgcttttaaaagggct
ccaaacaccaaatattacctaaaacacttctgattatcaaaaatacttta
cataccaaaccacttctgaataccaaacactttgaatacaggatgatgct
tcgaatgccaagtagtactgcccgagagctggtgaggctgctcagctcaa
acagggcggctggtggggtggagaacatggaatgctgagaactgttctgt
catggctgaggatgcttcgtgtcgtcatcctgttacataggctctggcgg
catgatgtgcctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_94111815_94112371
seq2: B6Ng01-043C07.b_46_602

seq1  GAATTCAACTTTTCACTTCTATAACAGGGCTGCAACATGCTCTATCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTTCACTTCTATAACAGGGCTGCAACATGCTCTATCAAAT  50

seq1  GTATAGTATTGGGCCTGATACAATTAAAAGGCTGCCATGCAGCAAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTATTGGGCCTGATACAATTAAAAGGCTGCCATGCAGCAAAAGGA  100

seq1  ACAACTAGCCAAGTAAAGAGACACCCTATAAAATAGGGGGGAACCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGCCAAGTAAAGAGACACCCTATAAAATAGGGGGGAACCTCAGC  150

seq1  GACTGCACATTGCCCAGAGGAGAGTCACACAAAGAATATATAAAGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCACATTGCCCAGAGGAGAGTCACACAAAGAATATATAAAGAACTC  200

seq1  AAAAATTATCAAAAAACCAAAGCATCTGGTCAGGAAATGGGCATCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATCAAAAAACCAAAGCATCTGGTCAGGAAATGGGCATCTCAAA  250

seq1  AGATGACGTACACACGGCCAGCATGCATGAAAATGGCTTTAATATTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACGTACACACGGCCAGCATGCATGAAAATGGCTTTAATATTCTTA  300

seq1  GCCATCAGGGAAATGCAGGTCAGAACAGTATTGAGATTTCATCTCTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAGGGAAATGCAGGTCAGAACAGTATTGAGATTTCATCTCTCATT  350

seq1  AAGAAACAGCACAGGCTAGAGATGTAGCTTGTGGGTAGAGTGTTTGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGCACAGGCTAGAGATGTAGCTTGTGGGTAGAGTGTTTGCTTA  400

seq1  GCCCACACAAAGTTGTGGTTCAGTTCCCAGCACTGCATAAAACAAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACAAAGTTGTGGTTCAGTTCCCAGCACTGCATAAAACAAGTGTG  450

seq1  GTTGTTACAGCTGTAATCCCAACACTCAAGAGGTAGAGGCAGAACAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTACAGCTGTAATCCCAACACTCAAGAGGTAGAGGCAGAACAATCA  500

seq1  GAAGTTCAGGGTTATCCTTGGCTACAAAGGGCTTTCCAGGGTTATCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCAGGGTTATCCTTGGCTACAAAGGGCTTTCCAGGGTTATCCTTG  550

seq1  GCTACAA  557
      |||||||
seq2  GCTACAA  557

seq1: chr8_94182891_94184071
seq2: B6Ng01-043C07.g_67_1231 (reverse)

seq1  GTGAGGCAGACATCATGGCGGCAGGAGCATAATGTAACAGGCTGATCGAC  50
      |||||||  |||||||| || || |||| | |||||||||| ||| ||||
seq2  GTGAGGC--ACATCATGCCGCCA-GAGCCT-ATGTAACAGGATGA-CGAC  45

seq1  AGGAAGCATCCTTCAGCCATTGACAGAACAGTTCTGCAGCATTCCATGTT  100
      | ||||||||| ||||||| ||||||||||||||| ||||||||||||||
seq2  ACGAAGCATCC-TCAGCCA-TGACAGAACAGTTCT-CAGCATTCCATGTT  92

seq1  CTCCACCCACACAGTCCGCCCTGTCTGCGCTGAGCAGCCTCACCGGCTCT  150
      |||||||| |||   ||||||||| || |||||||||||||||| |||||
seq2  CTCCACCC-CACCAGCCGCCCTGTTTGAGCTGAGCAGCCTCACCAGCTCT  141

seq1  CGGGCAGTGACTACTTGGCATTCGAAGCATCATCCTGGTATTCAAAAGTG  200
      |||||||| ||||||||||||||||||||||||||| |||||| ||||||
seq2  CGGGCAGT-ACTACTTGGCATTCGAAGCATCATCCT-GTATTC-AAAGTG  188

seq1  GTTTTGGTATTCAGAAGTGGTTTTGGTATGTAAAAGTATTTTTGATATTC  250
        |||||||||||||||||| |||||||||| ||||||||||||||| ||
seq2  --TTTGGTATTCAGAAGTGG-TTTGGTATGT-AAAGTATTTTTGATAATC  234

seq1  AGAAGTGTTTTAGGT-ATATTTGGTGTTTGGAGCCCTTTTAAAAGCATCC  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTTTTAGGTAATATTTGGTGTTTGGAGCCCTTTTAAAAGCATCC  284

seq1  ATACAGCCTTGTTTATTAGATTCCTCCTTTGTGAGCTTCAAACATAGTCT  349
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATACAGCCTTGTTTATTAGATTCCTCTTTTGTGAGCTTCAAACATAGTCT  334

seq1  ATATACAACTAAGATTTAAGCCTGGGTTTAAATGGCTATGTTTAAAAAAA  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATACAACTAAGATTTAAGCCTGGGTTTAAATGGCTATG-TTAAAAAAA  383

seq1  GAACTGACTGCTAAAAAGGTATGCTGAGCTGGAAGAAAGAAAGGTGGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACTGCTAAAAAGGTATGCTGAGCTGGAAGAAAGAAAGGTGGCTA  433

seq1  GTGGGCCACGGCTGGGGCTCATCCCTCACATGAGTGTTGACTTTACAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCACGGCTGGGGCTCATCCCTCACATGAGTGTTGACTTTACAGAT  483

seq1  CTAGAGGGGGAGGGTGAAAAGCCATGCCCTTCGCTGAAATTCAGTTCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGGGGAGGGTGAAAAGCCATGCCCTTCGCTGAAATTCAGTTCAGA  533

seq1  GCCACTTCTGTGTTAGATGCAAGAGCGATGCAAGACTGTCGTGCTAATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCTGTGTTAGATGCAAGAGCGATGCAAGACTGTCGTGCTAATGT  583

seq1  ATAAGATCACCTTTACAACACAGACTGTCATGGTGGCTGTAACCTAGGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATCACCTTTACAACACAGACTGTCATGGTGGCTGTAACCTAGGGT  633

seq1  AGCTCACCATGTGTACCATTGTCCATAATGTCATAATAGCAGTAACAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCATGTGTACCATTGTCCATAATGTCATAATAGCAGTAACAGAG  683

seq1  ATCTACAAAGAGGGATTGGAGTGCTAAGGCTAAGTGTGTGTTTGGATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAAGAGGGATTGGAGTGCTAAGGCTAAGTGTGTGTTTGGATATG  733

seq1  TGTGTATAAATATACATATCATAAGCATTCGTGTATATATATGTCTACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATAAATATACATATCATAAGCATTCGTGTATATATATGTCTACAT  783

seq1  ATACATATGCATAAGTAGATGTATACACATACATATATATATATATGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGCATAAGTAGATGTATACACATACATATATATATATATGAGA  833

seq1  GGGACTCTCAGTAACTCGGGCTAGCTTTGAACTCACAATCCTCCTGCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTCAGTAACTCGGGCTAGCTTTGAACTCACAATCCTCCTGCTTT  883

seq1  TTCTTCTTCATGGTAGAATCATGGACATGCCAGTACCTGTAGAAGTGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCATGGTAGAATCATGGACATGCCAGTACCTGTAGAAGTGATC  933

seq1  ATGGTTCTTCCAGCCCCATGCTCCCGGAAATAAGACTCAGACTCAAAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTTCCAGCCCCATGCTCCCGGAAATAAGACTCAGACTCAAAGTA  983

seq1  TCTTTACAAATACCTTGGCCATATAGCTAGGCTCTTCTCTGACTAGATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAAATACCTTGGCCATATAGCTAGGCTCTTCTCTGACTAGATCA  1033

seq1  TAACTTACTATAGCCCATTTATTCTAATCTACATTCTGCCATATAACTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACTATAGCCCATTTATTCTAATCTACATTCTGCCATATAACTGG  1083

seq1  TTTCCTGCTCAGGTACCATGTGTCTGTCTTGTCATATCTTCCCTGGCAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCTCAGGTACCATGTGTCTGTCTTGTCATATCTTCCCTGGCAAA  1133

seq1  TCCCCTATGTTTTTTTCACTCTCCCAGAATTC  1181
      ||||||||||||||||||||||||||||||||
seq2  TCCCCTATGTTTTTTTCACTCTCCCAGAATTC  1165