BAC Information

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BAC

Clone NameB6Ng01-044P05
Chromosome8 (Build37)
Map Location 55,345,961 - 55,346,895
singlet/doubletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044P05.g
ACCDH870554
length978
definitionDH870554|Mus musculus domesticus DNA, BAC clone: B6Ng01-044P05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctacggctaggggtggagtttaacagaaatgtgtgtgcttggg
aatgttgcttccgaggttccatttctggtgctactttgcttgcaccttct
cctacaacaaacagtccaacgaaaatgcttgtggttctctttaagacttc
tgggactttcctctctccactcgtgaggcagacgattttccatttcagag
accacaggccaatctgaggttcccccttctctgatgtgtcaagttgacaa
taaagctaactaaggccatactaatctaccattcccactccagttatata
ctgttcaattatggcaagaatcacagaagaattactctaagctgagagta
atttctgctctgaaagaattacaagttgtttgaggatataagggagaaat
gtaaatagtggaaaaaatagtcttgttgcttgtaattcacacatttccag
ttttgtttggtgagccagtgaggcagatgatcagagtgtctgaagactga
tttggtgtaggagactgtcctcctctgattaaagacttacaatttaagag
caagggttcctcccacataaatatatgctgagatgtaacacaatttacag
tgtattttttattaatacaagaatgtaattctttcagattaccatgatga
tttggggaatatagaagcatgcctgcagaaaaacttctggatgcatctac
atcaaccattgcattattaagggctctgatagaaagatgccccaaagaga
taaaggagataagatcagctaacattctggaagcatgacatcacctgacc
cagagtgtggaaatgctcaccggcatagtgagcactatttatagtgcatc
ttccttatggcaaagtggtgagattatgtggtatgctttccatggtagtt
atttctagagcagcttgttatgacatttttttgctcaagagtggggttat
gattcgtggttgatggttgtcacccttg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55345961_55346895
seq2: B6Ng01-044P05.g_115_1045 (reverse)

seq1  CAAGTGTGACAACCATCAAACCACAAACAATAACCCAACTCTTGAGCAAA  50
      |||| |||||||||||| |||||| ||  ||||||| |||||||||||||
seq2  CAAGGGTGACAACCATC-AACCACGAATCATAACCCCACTCTTGAGCAAA  49

seq1  TAAATGTTCATAACAAGCTGCTCTAGAAATAACTACCATGGAAAGCATAC  100
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATG-TCATAACAAGCTGCTCTAGAAATAACTACCATGGAAAGCATAC  98

seq1  CACATAATCTCACCACTTTGCCATAAGG-AGATGCACTATAAATAGTGCT  149
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACATAATCTCACCACTTTGCCATAAGGAAGATGCACTATAAATAGTGCT  148

seq1  CACTATGCCGGTGAGCATTTCCAACACTCTGGGTCAGGTGATGTCATGCT  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACTATGCCGGTGAGCATTTCC-ACACTCTGGGTCAGGTGATGTCATGCT  197

seq1  TCCAGAATGTTAGCTGATCTTATCTCCTTTATCTCTTTGGGGCATCTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATGTTAGCTGATCTTATCTCCTTTATCTCTTTGGGGCATCTTTC  247

seq1  TATCAGAGCCCTTAATAATGCAATGGTTGATGTAGATGCATCCAGAAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGCCCTTAATAATGCAATGGTTGATGTAGATGCATCCAGAAGTT  297

seq1  TTTGCTGCAGGCATGCTTCTATATTCCCCAAATCATCATGGTAATCTGAA  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT-CTGCAGGCATGCTTCTATATTCCCCAAATCATCATGGTAATCTGAA  346

seq1  AGAATTACATTCTTGTATTAATAAAAAATACACTGTAAATTGTGTTACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACATTCTTGTATTAATAAAAAATACACTGTAAATTGTGTTACAT  396

seq1  CTCAGCATATATTTATGTGGGAGGAACCCTTGCTCTTAAATTGTAAGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATATATTTATGTGGGAGGAACCCTTGCTCTTAAATTGTAAGTCT  446

seq1  TTAATCAGAGGAGGACAGTCTCCTACACCAAATCAGTCTTCAGACACTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGAGGAGGACAGTCTCCTACACCAAATCAGTCTTCAGACACTCT  496

seq1  GATCATCTGCCTCACTGGCTCACCAAACAAAACTGGAAATGTGTGAATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCTGCCTCACTGGCTCACCAAACAAAACTGGAAATGTGTGAATTA  546

seq1  CAAGCAACAAGACTATTTTTTCCACTATTTACATTTCTCCCTTATATCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACAAGACTATTTTTTCCACTATTTACATTTCTCCCTTATATCCT  596

seq1  CAAACAACTTGTAATTCTTTCAGAGCAGAAATTACTCTCAGCTTAGAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACTTGTAATTCTTTCAGAGCAGAAATTACTCTCAGCTTAGAGTA  646

seq1  ATTCTTCTGTGATTCTTGCCATAATTGAACAGTATATAACTGGAGTGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTGTGATTCTTGCCATAATTGAACAGTATATAACTGGAGTGGGA  696

seq1  ATGGTAGATTAGTATGGCCTTAGTTAGCTTTATTGTCAACTTGACACATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGATTAGTATGGCCTTAGTTAGCTTTATTGTCAACTTGACACATC  746

seq1  AGAGAAGGGGGAACCTCAGATTGGCCTGTGGTCATTCTTGTGGAAAATCG  799
      |||||||||||||||||||||||||||||||||  |    ||||||||||
seq2  AGAGAAGGGGGAACCTCAGATTGGCCTGTGGTCTCTGAAATGGAAAATCG  796

seq1  TCTTCACTACAAACTGATGTAGGAAAGTCC----AGCCTACAATGGATAG  845
      ||| |   || |   ||   ||||||||||    || ||    |  | ||
seq2  TCTGCCTCACGAGTGGAGAGAGGAAAGTCCCAGAAGTCT----TAAAGAG  842

seq1  AACCACTCCTATATAGGTGGGCCTGGTTTGTATAAGACAAAGCTCAAGCA  895
      ||||||    || |  || || ||| ||  | || || || |  ||||||
seq2  AACCACAAGCATTTTCGTTGGACTGTTTGTTGTAGGAGAAGGTGCAAGCA  892

seq1  AAGTAGTAAGAAAAATGTTAAACTTGAAAGCAACATTCCC  935
      |||||| |  | |||||  || || | |||||||||||||
seq2  AAGTAGCACCAGAAATG-GAACCTCGGAAGCAACATTCCC  931