BAC Information

Click to search

BAC

Clone NameB6Ng01-048O21
Chromosome8 (Build37)
Map Location 123,828,226 - 123,978,271
singlet/doubletdoublet
Overlap genenone
Upstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
Downstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048O21.bB6Ng01-048O21.g
ACCDH873342DH873343
length197898
definitionDH873342|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O21, 5' end.DH873343|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,978,074 - 123,978,271)(123,828,226 - 123,829,119)
sequence
agttatggatgctaagagagacaagctcctcagaaggccgtcatcagctt
ttgctatggaggccccagggccccattcaccccaccagaacccttctctc
ccctcaacagtgtccctagcctctctctcatccatggggagcgggggggg
ggggctcttgtgagaatttggagcaaaatttattggttgattactat
gaattcttgtctaagtgtgtgcaacatactcagggacccaacaaggactc
ggcgcttaggaaaggcaaataccactacttagactttaaaaggaattgat
atcaatgaaattcctgtttatgaggaatttctttatgagggagaaggaag
aggaggggactagaattgcttggtttaagcttcaatggcaactttccggt
ctcaactgaggtgaccctctcctaagcttccccagagtgtatctgcccct
tcgaatcagcttctgacttagttgacggtgacatctgtattatgctgctt
ccctgatcctaactggaagggcacagcaagatttgcaactgccaagcaag
cagcttaagtaattcttacctgtgtgtacaatgggggttcctaggaaact
ctctggcacccctttctttcaatatctcatctctgagagtgactgtctcc
cacctgcctcgctctccaatggcgttacctgttttggaacctcacacaaa
cagaagctgcaagtgcccctcacgtactccctcatggtcatcagtcacag
ttgggtccgatcacacatgtcagcattttgccaatttcttggtcatttgt
tccaagctctaggggtatttttccgtctctgtcctgaacacatgctcgct
gattatattctgtctcttataggacaggcaagttttcattggacacctac
cactaggatcttctgaccttgggtcgattcaccaccccaaccattgcaga
gcttccatccctcctcagctgcaaacccttcaagacaaggctgtctaacc
taactgtctttcctttttgatgaaagtggcattgtctgactctgactcaa
cgcctgctttcccaaggtgatgccactgctccgggccccctttatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_123978074_123978271
seq2: B6Ng01-048O21.b_53_249 (reverse)

seq1  ATAGTAATCTGCCAAGAAATTTTGCTCCAGCTTCTCACAAGAGCCCCCCC  50
      |||||||||  |||| |||||||||||||  |||||||||||| ||||||
seq2  ATAGTAATCAACCAATAAATTTTGCTCCAAATTCTCACAAGAG-CCCCCC  49

seq1  CCCCCCGCTCCCCATGGATGAGAGAGAGGCTAGGGACACTGTTGAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGCTCCCCATGGATGAGAGAGAGGCTAGGGACACTGTTGAGGGGA  99

seq1  GAGAAGGGTTCTGGTGGGGTGAATGGGGCCCTGGGGCCTCCATAGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGTTCTGGTGGGGTGAATGGGGCCCTGGGGCCTCCATAGCAAAA  149

seq1  GCTGATGACGGCCTTCTGAGGAGCTTGTCTCTCTTAGCATCCATAACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGACGGCCTTCTGAGGAGCTTGTCTCTCTTAGCATCCATAACT  197

seq1: chr8_123828226_123829119
seq2: B6Ng01-048O21.g_69_966

seq1  GAATTCTTGTCTAAGTGTGTGCAACATACTCAGGGACCCAACAAGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTAAGTGTGTGCAACATACTCAGGGACCCAACAAGGACTC  50

seq1  GGCGCTTAGGAAAGGCAAATACCACTACTTAGACTTTAAAAGGAATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTTAGGAAAGGCAAATACCACTACTTAGACTTTAAAAGGAATTGAT  100

seq1  ATCAATGAAATTCCTGTTTATGAGGAATTTCTTTATGAGGGAGAAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAAATTCCTGTTTATGAGGAATTTCTTTATGAGGGAGAAGGAAG  150

seq1  AGGAGGGGACTAGAATTGCTTGGTTTAAGCTTCAATGGCAACTTTCCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGACTAGAATTGCTTGGTTTAAGCTTCAATGGCAACTTTCCGGT  200

seq1  CTCAACTGAGGTGACCCTCTCCTAAGCTTCCCCAGAGTGTATCTGCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTGAGGTGACCCTCTCCTAAGCTTCCCCAGAGTGTATCTGCCCCT  250

seq1  TCGAATCAGCTTCTGACTTAGTTGACGGTGACATCTGTATTATGCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCAGCTTCTGACTTAGTTGACGGTGACATCTGTATTATGCTGCTT  300

seq1  CCCTGATCCTAACTGGAAGGGCACAGCAAGATTTGCAACTGCCAAGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCCTAACTGGAAGGGCACAGCAAGATTTGCAACTGCCAAGCAAG  350

seq1  CAGCTTAAGTAATTCTTACCTGTGTGTACAATGGGGGTTCCTAGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAGTAATTCTTACCTGTGTGTACAATGGGGGTTCCTAGGAAACT  400

seq1  CTCTGGCACCCCTTTCTTTCAATATCTCATCTCTGAGAGTGACTGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCACCCCTTTCTTTCAATATCTCATCTCTGAGAGTGACTGTCTCC  450

seq1  CACCTGCCTCGCTCTCCAATGGCGTTACCTGTTTTGGAACCTCACACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCGCTCTCCAATGGCGTTACCTGTTTTGGAACCTCACACAAA  500

seq1  CAGAAGCTGCAAGTGCCCCTCACGTACTCCCTCATGGTCATCAGTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTGCAAGTGCCCCTCACGTACTCCCTCATGGTCATCAGTCACAG  550

seq1  TTGGGTCCGATCACACATGTCAGCA-TTTGCCAATTTCTTGGTCATTTTG  599
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  TTGGGTCCGATCACACATGTCAGCATTTTGCCAATTTCTTGGTCA-TTTG  599

seq1  TTCCAAGGCTCTAGGGGTA-TTTTCCGTCTCTGTCCTGAACACATGCTCG  648
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCCAA-GCTCTAGGGGTATTTTTCCGTCTCTGTCCTGAACACATGCTCG  648

seq1  CTGAATATATTCTGTCTCTTATAGGACAGGCAGGTGTTCA-TGGACA-CT  696
      |||| ||||||||||||||||||||||||||| || |||| |||||| ||
seq2  CTGATTATATTCTGTCTCTTATAGGACAGGCAAGTTTTCATTGGACACCT  698

seq1  ACCACAAGGATC-TCTGACC-TGGGTCGATTCA-CACCCC-ACCATTGCA  742
      ||||| |||||| ||||||| |||||||||||| |||||| |||||||||
seq2  ACCACTAGGATCTTCTGACCTTGGGTCGATTCACCACCCCAACCATTGCA  748

seq1  GAGCTCCAATCCCTCCTCAGCTTGCAGACCCTCAAGGACAATGTCTGTCT  792
      ||||| | ||||||||||||| |||| |||||  | ||||| | ||||||
seq2  GAGCTTCCATCCCTCCTCAGC-TGCAAACCCTTCAAGACAA-GGCTGTCT  796

seq1  -ATCTATCTGTTCTTTCTTTTTGATGACAGTGGCATTGTCTGAACTCTGA  841
       | ||| ||||  || ||||||||||| |||||||||||||| |||||||
seq2  AACCTAACTGTCTTTCCTTTTTGATGAAAGTGGCATTGTCTG-ACTCTGA  845

seq1  CTCCAACGTCTGCTTTCCTA--GTGAATGCCACTGCTCAGGCCCCCCTTT  889
      || ||||| ||||||||| |  ||| |||||||||||| || ||||||||
seq2  CT-CAACGCCTGCTTTCCCAAGGTG-ATGCCACTGCTCCGGGCCCCCTTT  893

seq1  ATCCC  894
      || ||
seq2  ATACC  898