BAC Information

Click to search

BAC

Clone NameB6Ng01-050B18
Chromosome8 (Build37)
Map Location 129,928,585 - 130,077,020
singlet/doubletdoublet
Overlap genePard3
Upstream gene1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1
Downstream geneEG628847, Nrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050B18.bB6Ng01-050B18.g
ACCDH874160DH874161
length9901,101
definitionDH874160|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B18, 5' end.DH874161|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,928,585 - 129,929,592)(130,075,887 - 130,077,020)
sequence
gaattcataatgtgctgatttttgtggctactttctgggataattgccat
catttcttctagtagagaagtcatagccggtattcaaaacctagctctga
tcactttgattgacatgctcatcaatcataaccacatctgcccattattc
tcccaggtgaacacaactggtacagtccttacacaagttatcccgctctg
taggtgttttccctccatcactagggtgtgactaaatacagagatgatgt
tgcttgtctagcacctgtctaccctgtatagctacccaaccagtgcatgg
atagacgatcactgtaagtttgtgaggtttgcctgcagatttcctggtaa
aatctcccagaaggctctcatacctaagaccctatgtgttatgttcacat
taaaacattttgaaggtaaatattttttttttttttgaaatcttaaaacc
agagacatcacatgttctgctgcatgctatgtagccagccatgctgtgga
agcagtcattaactgacttgaggtttgtgtttgacaatgccttgggagaa
acatatgcactgaattctctcattccatcaggtagagtaggtgtgtcaaa
gacttaggggttttcttgatgtagtaaaattttaaaatgaacaggcgtgg
cacctccattgacatctagaatttctttttcaccggtcaggtaaatgcca
gctgtcccccacggtgaacatgcctcacgatgacactgtcatgattgaag
atgacaggctgcctgtgctccctcctcacctctctgaccagtcctcctcc
agctcccatgatgacgttggattcataatgacagaagcaggcacgtgggc
caaagctaccatcagtgactcagccgactggtgagtgagagcccagtctg
gagctactatagcataaataatatctagtcattcccaactgatcaacatg
ggtaaattagtagtattgctggactagagattactggagg
gaattcaatttcttctttgtttaccacatgactaattagtcaggaactgg
ctaatcctattgcatgcattaaatctgcacacgcacgcccagctttttac
gagcagatctcaatttctgtgaagaacagaccgagcgctcttgttccgga
atactccggagtcattcagcactcgatgagttacaatgcacaccttctgg
aaccctatggggtatatcccagcttttaactatatagaggccacggaaag
agaaaaagccagttcacggtgccctgcatttcagtggaggcagcagattc
gaatatgatgtgggaagaaaatatccagtgttctaaagaaatactctaaa
tttattagcgatgttcccattttgatacctgtaacttaatgggaccttgg
tactaggatgaccactattattatcctcctgaataagcgggtacagaatc
aacttccttctgtgttcaccacatgtgcttctagggctgtgaaatacgga
gatgattactaagcctccaactcacaaatcatcatccgcatttctctgac
acgtctgattgtttctccaggacgcggcaggcccggctctgggcttacca
ctatgcatagtcttccgctgaaagggtcccgtgtcattgccctttatgta
cctcagcaagctgagcataaagagcctcctcacagggccaaaacagaagt
tcataggaattgtgtctgggttgacagttttaaacagttcacgtgaatcc
cacctgtcacctaggggctgtctctggactctgctgcacccctcagcaag
aatgagaaccacttcctccaatcagcagctcagagccagtgaggacagca
atgcctcagggctgggtggggcttcaccctatctgtcgcctcatgaccac
agtgctctgacagactgtgccagctggagacgacccccacgtgacccctg
ttttgaggctgcatagaacatcttcacttgcctatcagtgggtagaatca
gcatatatgcatagtccagctgggctggttaattggcctgcaattcccgt
ttcctttacaagatacagtctgatgggaagaagttcctgataaggcagtt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_129928585_129929592
seq2: B6Ng01-050B18.b_42_1031

seq1  GAATTCATAATGTGCTGATTTTTGTGGCTACTTTCTGGGATAATTGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGTGCTGATTTTTGTGGCTACTTTCTGGGATAATTGCCAT  50

seq1  CATTTCTTCTAGTAGAGAAGTCATAGCCGGTATTCAAAACCTAGCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTCTAGTAGAGAAGTCATAGCCGGTATTCAAAACCTAGCTCTGA  100

seq1  TCACTTTGATTGACATGCTCATCAATCATAACCACATCTGCCCATTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGATTGACATGCTCATCAATCATAACCACATCTGCCCATTATTC  150

seq1  TCCCAGGTGAACACAACTGGTACAGTCCTTACACAAGTTATCCCGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTGAACACAACTGGTACAGTCCTTACACAAGTTATCCCGCTCTG  200

seq1  TAGGTGTTTTCCCTCCATCACTAGGGTGTGACTAAATACAGAGATGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTTTCCCTCCATCACTAGGGTGTGACTAAATACAGAGATGATGT  250

seq1  TGCTTGTCTAGCACCTGTCTACCCTGTATAGCTACCCAACCAGTGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCTAGCACCTGTCTACCCTGTATAGCTACCCAACCAGTGCATGG  300

seq1  ATAGACGATCACTGTAAGTTTGTGAGGTTTGCCTGCAGATTTCCTGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACGATCACTGTAAGTTTGTGAGGTTTGCCTGCAGATTTCCTGGTAA  350

seq1  AATCTCCCAGAAGGCTCTCATACCTAAGACCCTATGTGTTATGTTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCCAGAAGGCTCTCATACCTAAGACCCTATGTGTTATGTTCACAT  400

seq1  TAAAACATTTTGAAGGTAAATATTTTTTTTTTTTTTGAAATCTTAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTTGAAGGTAAATATTTTTTTTTTTTTTGAAATCTTAAAACC  450

seq1  AGAGACATCACATGTTCTGCTGCATGCTATGTAGCCAGCCATGCTGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATCACATGTTCTGCTGCATGCTATGTAGCCAGCCATGCTGTGGA  500

seq1  AGCAGTCATTAACTGACTTGAGGTTTGTGTTTGACAATGCCTTGGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCATTAACTGACTTGAGGTTTGTGTTTGACAATGCCTTGGGAGAA  550

seq1  ACATATGCACTGAATTCTCTCATTCCATCAGGTAGAGTAGGTGTGTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCACTGAATTCTCTCATTCCATCAGGTAGAGTAGGTGTGTCAAA  600

seq1  GACTTAGGGGTTTTCTTGATGTAGTAAAATTTTAAAATGAACAGGCGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGGGTTTTCTTGATGTAGTAAAATTTTAAAATGAACAGGCGTGG  650

seq1  CACCTCCATTGACATCTAGAATTTCTTTTTCACCGGTCAGGTAAATGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCATTGACATCTAGAATTTCTTTTTCACCGGTCAGGTAAATGCCA  700

seq1  GCTGTCCCCCACGGTGAACATGCCTCACGATGACACTGTCATGATTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCCCACGGTGAACATGCCTCACGATGACACTGTCATGATTGAAG  750

seq1  ATGACAGGCTGCCTGTGCTCCCTCCTCACCTCTCTGACCAGTCCTCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGCTGCCTGTGCTCCCTCCTCACCTCTCTGACCAGTCCTCCTCC  800

seq1  AGCTCCCATGATGACGTTGGATTCATAATGACAGAAGCAGGCACGTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCATGATGACGTTGGATTCATAATGACAGAAGCAGGCACGTGGGC  850

seq1  CAAAGCTACCATCAGTGACTCAGCCGACTGGTGAGTGAGAAGCCCAGGTC  900
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CAAAGCTACCATCAGTGACTCAGCCGACTGGTGAGTGAG-AGCCCA-GTC  898

seq1  TGGAGCTTACTATAGCATAAATAATATCTAAGTCATTCCCAAACTGATCC  950
      |||||| |||||||||||||||||||||| |||||||||| ||||||| |
seq2  TGGAGC-TACTATAGCATAAATAATATCT-AGTCATTCCC-AACTGAT-C  944

seq1  AACAATTGGGTTAAAAATTAGTAGTTAATATGCCTGGGAACTAGAGATTT  1000
      ||||  |||||   ||||||||||    |||  ||||  |||||||| ||
seq2  AACA--TGGGT---AAATTAGTAG----TATTGCTGG--ACTAGAGA-TT  982

seq1  ACTGGAGG  1008
      ||||||||
seq2  ACTGGAGG  990

seq1: chr8_130075887_130077020
seq2: B6Ng01-050B18.g_66_1166 (reverse)

seq1  TAACTGCCCTTATACAGAACTTCTTCCCATCTAGACTGTAAATTTCTTTG  50
      |||||| ||||||   ||||||||||||||| ||||||||    ||||  
seq2  TAACTG-CCTTATCAGGAACTTCTTCCCATC-AGACTGTA----TCTT--  42

seq1  GTAAAAGGAAAACGGGAAAATTGCAGCCCATTTAAACAGCCCAGCCTGGA  100
      |||||  | |||||||  |||||||| ||| |||| |||||||| |||| 
seq2  GTAAA--GGAAACGGG--AATTGCAGGCCAATTAACCAGCCCAG-CTGG-  86

seq1  ACTAATGCATATAATTGCTGATTCTTACCCACTGAATTAGGCAAGTGAAG  150
      ||| |||||||||  ||||||||| ||||||||||  |||||||||||||
seq2  ACT-ATGCATATA--TGCTGATTC-TACCCACTGA--TAGGCAAGTGAAG  130

seq1  ATTGTTCTATGCAGCCCTACAAAACAGGGGGTCCACGTGGGGGTCGTCTC  200
      | ||||||||||||||   |||||||||||   |||||||||||||||||
seq2  A-TGTTCTATGCAGCC--TCAAAACAGGGG--TCACGTGGGGGTCGTCTC  175

seq1  CAGCTGGGCACAGTTCTGTCAGAGCACTGTTGGTCATGGAGGCGACAGAT  250
      ||||| ||||||| ||||||||||||||| ||||||| ||||||||||||
seq2  CAGCT-GGCACAG-TCTGTCAGAGCACTG-TGGTCAT-GAGGCGACAGAT  221

seq1  AGGGTGAAGCCCCACCCAGCCCCTGAGGCATTGCTGTCCTCACTGGCTCT  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGTGAAGCCCCACCCAG-CCCTGAGGCATTGCTGTCCTCACTGGCTCT  270

seq1  GAGCCTGCTGATTGGAGGAAGTGGTTCTCATTCTTGCCTGAGGGGTGCAG  350
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAG-CTGCTGATTGGAGGAAGTGGTTCTCATTCTTG-CTGAGGGGTGCAG  318

seq1  CAGAGTCCAGAGACAGCCCCTAGGTGACAGGTGGGATTCACGTGAACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCAGAGACAGCCCCTAGGTGACAGGTGGGATTCACGTGAACTGT  368

seq1  TTAAAACTGTCAACCCAGACACAATTCCTATGAACCTTCTGTTTTGGCCC  450
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAAAACTGTCAACCCAGACACAATTCCTATGAA-CTTCTGTTTTGGCCC  417

seq1  TGTGAGGAGGCTCTTTATGCTCAGCTTGCTGAGGTACATAAAGGGCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAGGCTCTTTATGCTCAGCTTGCTGAGGTACATAAAGGGCAATG  467

seq1  ACACGGGACCCTTTCAGCGGAAGACTATGCATAGTGGTAAGCCCAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGACCCTTTCAGCGGAAGACTATGCATAGTGGTAAGCCCAGAGCC  517

seq1  GGGCCTGCCGCGTCCTGGAGAAACAATCAGACGTGTCAGAGAAATGCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCCGCGTCCTGGAGAAACAATCAGACGTGTCAGAGAAATGCGGA  567

seq1  TGATGATTTGTGAGTTGGAGGCTTAGTAATCATCTCCGTATTTCACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTTGTGAGTTGGAGGCTTAGTAATCATCTCCGTATTTCACAGCC  617

seq1  CTAGAAGCACATGTGGTGAACACAGAAGGAAGTTGATTCTGTACCCGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCACATGTGGTGAACACAGAAGGAAGTTGATTCTGTACCCGCTT  667

seq1  ATTCAGGAGGATAATAATAGTGGTCATCCTAGTACCAAGGTCCCATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGAGGATAATAATAGTGGTCATCCTAGTACCAAGGTCCCATTAAG  717

seq1  TTACAGGTATCAAAATGGGAACATCGCTAATAAATTTAGAGTATTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTATCAAAATGGGAACATCGCTAATAAATTTAGAGTATTTCTTT  767

seq1  AGAACACTGGATATTTTCTTCCCACATCATATTCGAATCTGCTGCCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTGGATATTTTCTTCCCACATCATATTCGAATCTGCTGCCTCCA  817

seq1  CTGAAATGCAGGGCACCGTGAACTGGCTTTTTCTCTTTCCGTGGCCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGCAGGGCACCGTGAACTGGCTTTTTCTCTTTCCGTGGCCTCTA  867

seq1  TATAGTTAAAAGCTGGGATATACCCCATAGGGTTCCAGAAGGTGTGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTAAAAGCTGGGATATACCCCATAGGGTTCCAGAAGGTGTGCATT  917

seq1  GTAACTCATCGAGTGCTGAATGACTCCGGAGTATTCCGGAACAAGAGCGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCATCGAGTGCTGAATGACTCCGGAGTATTCCGGAACAAGAGCGC  967

seq1  TCGGTCTGTTCTTCACAGAAATTGAGATCTGCTCGTAAAAAGCTGGGCGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCTGTTCTTCACAGAAATTGAGATCTGCTCGTAAAAAGCTGGGCGT  1017

seq1  GCGTGTGCAGATTTAATGCATGCAATAGGATTAGCCAGTTCCTGACTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGCAGATTTAATGCATGCAATAGGATTAGCCAGTTCCTGACTAAT  1067

seq1  TAGTCATGTGGTAAACAAAGAAGAAATTGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  TAGTCATGTGGTAAACAAAGAAGAAATTGAATTC  1101