BAC Information

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BAC

Clone NameB6Ng01-051M09
Chromosome8 (Build37)
Map Location 55,198,790 - 55,199,875
singlet/doubletsinglet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051M09.bB6Ng01-051M09.g
ACCDH875317DH875318
length1,0701,160
definitionDH875317|Mus musculus domesticus DNA, BAC clone: B6Ng01-051M09, 5' end.DH875318|Mus musculus domesticus DNA, BAC clone: B6Ng01-051M09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttccacataaactgtgatggcttgcacactgtaaatacatgc
acctagtctgatttacaactacttaaaacagaattatacagcttagtttc
tatcttttggatatttgactttagggatgatttctgcagctatcattgtc
taagagataaatgagattgcatgcactgctctgtcatctgcaatgtattt
tcatatgaattatgcaaattaatacaacaaacttctacaagaaacattgc
tatcataatgttcctgatggtgaacttaaaactaagaaaaatgtaaaact
atctgagatataatggagagtaactaggaagaattccaacccactgtttc
ttacttacattccaaatccctgcatgtaacatagtatttatcactacagg
aatatatatagaaaattgaagtcttgcaataattttaaaaattcagttct
ttatactatttttcacttgaggactttatatttctgtgtttgattgggaa
atataccatttcctgtcgttactagaatgagttgcacagagagagttgtt
taaaacatcacagatatgttacaatgtagaggtaagtgaaaactgattct
gttgggaccactgtatcaatgggactaaggagccacagaaggaccccatg
cattgccttcccagtgtcctgtccacaccctttgccttatggttgtcctg
ctgcctgcatggccagctgtgatcagaagagttggctctatgccatcact
ctctagcttctttattgcacttataaggactcacaattactacactgggc
ctactcacagctagcaagagaacagtgcagagagtaaggtcaaaattagc
agattaaaaaaaattgtaaaggagaaagaaacctccctgaccaagccaat
gttcatggaacagaacacgcaagagaaagccagctctaacaaatgaccca
taaatgttactacatctttgcttgggtcactgagctctgatcttctccag
ttctgaccatttcctttctgggaattccctcttacttataagtgtctttc
tcactctatctatattacaa
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatctttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggagtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagttctaccggaggatcctgaaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaacttatgaaattcctagccaa
atggatggacctggaggccatcatcctcagtgaggtaacaccttcacaaa
ggaactcacacaatatgtactcactgataagtggatattagctcaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttgaaaggagttacagagacaaattttggagctgagatga
aaggatggtccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagaaaac
acagaagtggatgctcacagtcagctaatagatggatcacagggctccca
tggaggagctagagaagtacccaggagctaaaggatctgcaccctatagt
ggatcacattatgactaccagtaccccggagctcttgactcttagctgct
atttatcaaagatggctagtcgcatccctggaagagagtcatgaaccgca
attttgaaatgccataccagggacgccaaggcataaggggagtagttggt
gtgggtaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55198790_55199875
seq2: B6Ng01-051M09.b_46_1115 (reverse)

seq1  TTGTATATATAGATAGAGGTGAAGAAAGACAACTTATTAGGTAAGAGAGA  50
      ||||| ||||||||||| ||| |||||||| ||||| || ||||||| ||
seq2  TTGTA-ATATAGATAGA-GTG-AGAAAGAC-ACTTA-TAAGTAAGAGGGA  45

seq1  ATTCCCAAGAAAGGAAATGGGTCAGAACTGGGAGAAAGATCAGAGGCTCA  100
      |||||| ||||||||||| |||||||||| |||| ||||||||| |||||
seq2  ATTCCC-AGAAAGGAAAT-GGTCAGAACT-GGAG-AAGATCAGA-GCTCA  90

seq1  GTGGACCCAAGCAAAGATGGTAGTAACATTTTATGGGTCATTTGTTTAGA  150
      || ||||||||||||||| ||||||||| ||||||||||||||| |||||
seq2  GT-GACCCAAGCAAAGAT-GTAGTAACA-TTTATGGGTCATTTG-TTAGA  136

seq1  GCTGGCTTTTCTCTTGCGTGTTCTGTTCCATGAACATTGGCTTGGTCAGG  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGC-TTTCTCTTGCGTGTTCTGTTCCATGAACATTGGCTTGGTCAGG  185

seq1  GAGGTTTCTTTCTCCTTTACAATTTTTTTTTAATCTGCTAATTTTGACCT  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGGTTTCTTTCTCCTTTACAA-TTTTTTTTAATCTGCTAATTTTGACCT  234

seq1  TACTCTCTGCACTGTTCTCTTGCTAGCTGTGAGTAGGCCCAGTGTAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTGCACTGTTCTCTTGCTAGCTGTGAGTAGGCCCAGTGTAGTAA  284

seq1  TTGTGAGTCCTTATAAGTGCAATAAAGAAGCTAGAGAGTGATGGCATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTCCTTATAAGTGCAATAAAGAAGCTAGAGAGTGATGGCATAGA  334

seq1  GCCAACTCTTCTGATCACAGCTGGCCATGCAGGCAGCAGGACAACCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCTTCTGATCACAGCTGGCCATGCAGGCAGCAGGACAACCATAA  384

seq1  GGCAAAGGGTGTGGACAGGACACTGGGAAGGCAATGCATGGGGTCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGGTGTGGACAGGACACTGGGAAGGCAATGCATGGGGTCCTTCT  434

seq1  GTGGCTCCTTAGTCCCATTGATACAGTGGTCCCAACAGAATCAGTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCTTAGTCCCATTGATACAGTGGTCCCAACAGAATCAGTTTTCA  484

seq1  CTTACCTCTACATTGTAACATATCTGTGATGTTTTAAACAACTCTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCTACATTGTAACATATCTGTGATGTTTTAAACAACTCTCTCTG  534

seq1  TGCAACTCATTCTAGTAACGACAGGAAATGGTATATTTCCCAATCAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCATTCTAGTAACGACAGGAAATGGTATATTTCCCAATCAAACA  584

seq1  CAGAAATATAAAGTCCTCAAGTGAAAAATAGTATAAAGAACTGAATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATATAAAGTCCTCAAGTGAAAAATAGTATAAAGAACTGAATTTTT  634

seq1  AAAATTATTGCAAGACTTCAATTTTCTATATATATTCCTGTAGTGATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTGCAAGACTTCAATTTTCTATATATATTCCTGTAGTGATAAA  684

seq1  TACTATGTTACATGCAGGGATTTGGAATGTAAGTAAGAAACAGTGGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTTACATGCAGGGATTTGGAATGTAAGTAAGAAACAGTGGGTTG  734

seq1  GAATTCTTCCTAGTTACTCTCCATTATATCTCAGATAGTTTTACATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTAGTTACTCTCCATTATATCTCAGATAGTTTTACATTTTT  784

seq1  CTTAGTTTTAAGTTCACCATCAGGAACATTATGATAGCAATGTTTCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTTAAGTTCACCATCAGGAACATTATGATAGCAATGTTTCTTGT  834

seq1  AGAAGTTTGTTGTATTAATTTGCATAATTCATATGAAAATACATTGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTGTTGTATTAATTTGCATAATTCATATGAAAATACATTGCAGA  884

seq1  TGACAGAGCAGTGCATGCAATCTCATTTATCTCTTAGACAATGATAGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGCAGTGCATGCAATCTCATTTATCTCTTAGACAATGATAGCTG  934

seq1  CAGAAATCATCCCTAAAGTCAAATATCCAAAAGATAGAAACTAAGCTGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCATCCCTAAAGTCAAATATCCAAAAGATAGAAACTAAGCTGTA  984

seq1  TAATTCTGTTTTAAGTAGTTGTAAATCAGACTAGGTGCATGTATTTACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGTTTTAAGTAGTTGTAAATCAGACTAGGTGCATGTATTTACAG  1034

seq1  TGTGCAAGCCATCACAGTTTATGTGGAAATGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGCCATCACAGTTTATGTGGAAATGAATTC  1070